RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 IRS4O14654 1257 aaPredicted RBP24.55■■□□□ 1.52
CCDC28A-203ENST00000617445 PPIP5K2O43314 1243 aa24.55■■□□□ 1.52
CCDC28A-203ENST00000617445 TSPYL6Q8N831 410 aa24.55■■□□□ 1.52
CCDC28A-203ENST00000617445 EPHX2P34913 555 aa24.54■■□□□ 1.52
CCDC28A-203ENST00000617445 WDR63Q8IWG1 891 aa24.54■■□□□ 1.52
CCDC28A-203ENST00000617445 TSR2Q969E8 191 aaKnown RBP24.54■■□□□ 1.52
CCDC28A-203ENST00000617445 METTL22Q9BUU2 404 aaPredicted RBP24.54■■□□□ 1.52
CCDC28A-203ENST00000617445 HTRA3P83110 453 aa24.53■■□□□ 1.52
CCDC28A-203ENST00000617445 MYD88Q99836 296 aa24.53■■□□□ 1.52
CCDC28A-203ENST00000617445 TWISTNBQ3B726 338 aaPredicted RBP24.52■■□□□ 1.52
CCDC28A-203ENST00000617445 JMYQ8N9B5 988 aa24.52■■□□□ 1.52
CCDC28A-203ENST00000617445 CWC25Q9NXE8 425 aaPredicted RBP24.52■■□□□ 1.52
CCDC28A-203ENST00000617445 COL4A5P29400 1685 aa24.52■■□□□ 1.52
CCDC28A-203ENST00000617445 PCCAP05165 728 aaPredicted RBP24.51■■□□□ 1.51
CCDC28A-203ENST00000617445 POTEIP0CG38 1075 aa24.51■■□□□ 1.51
CCDC28A-203ENST00000617445 POTEJP0CG39 1038 aa24.51■■□□□ 1.51
CCDC28A-203ENST00000617445 LMOD1P29536 600 aaPredicted RBP24.51■■□□□ 1.51
CCDC28A-203ENST00000617445 KIAA2012Q0VF49 1180 aa24.51■■□□□ 1.51
CCDC28A-203ENST00000617445 AOC3Q16853 763 aa24.51■■□□□ 1.51
CCDC28A-203ENST00000617445 KSR2Q6VAB6 950 aa24.51■■□□□ 1.51
CCDC28A-203ENST00000617445 ZNRF3Q9ULT6 936 aa24.51■■□□□ 1.51
CCDC28A-203ENST00000617445 GJA3Q9Y6H8 435 aa24.51■■□□□ 1.51
CCDC28A-203ENST00000617445 TAF1P21675 1872 aa24.51■■□□□ 1.51
CCDC28A-203ENST00000617445 CACNA1FO60840 1977 aa24.51■■□□□ 1.51
CCDC28A-203ENST00000617445 EAPPQ56P03 285 aaPredicted RBP24.5■■□□□ 1.51
CCDC28A-203ENST00000617445 RTL5Q5HYW3 569 aaPredicted RBP24.5■■□□□ 1.51
CCDC28A-203ENST00000617445 SLC51AQ86UW1 340 aa24.5■■□□□ 1.51
CCDC28A-203ENST00000617445 ZNF428Q96B54 188 aa24.5■■□□□ 1.51
CCDC28A-203ENST00000617445 CREBZFQ9NS37 354 aa24.49■■□□□ 1.51
CCDC28A-203ENST00000617445 MAP3K2Q9Y2U5 619 aa24.49■■□□□ 1.51
CCDC28A-203ENST00000617445 LRRC37AA6NMS7 1700 aa24.48■■□□□ 1.51
CCDC28A-203ENST00000617445 RPS8P62241 208 aaKnown RBP24.48■■□□□ 1.51
CCDC28A-203ENST00000617445 NEXNQ0ZGT2 675 aa24.48■■□□□ 1.51
CCDC28A-203ENST00000617445 CLEC11AQ9Y240 323 aa24.48■■□□□ 1.51
CCDC28A-203ENST00000617445 PI4KAP2A4QPH2 592 aa24.47■■□□□ 1.51
CCDC28A-203ENST00000617445 PDE8AO60658 829 aa24.47■■□□□ 1.51
CCDC28A-203ENST00000617445 CCDC152Q4G0S7 254 aa24.47■■□□□ 1.51
CCDC28A-203ENST00000617445 PI4KAP1Q8N8J0 262 aa24.47■■□□□ 1.51
CCDC28A-203ENST00000617445 CELF1Q92879 486 aaKnown RBP24.47■■□□□ 1.51
CCDC28A-203ENST00000617445 PASKQ96RG2 1323 aa24.46■■□□□ 1.51
CCDC28A-203ENST00000617445 SLC4A2P04920 1241 aa24.46■■□□□ 1.51
CCDC28A-203ENST00000617445 ADAMTSL1Q8N6G6 1762 aa24.46■■□□□ 1.51
CCDC28A-203ENST00000617445 FANCIQ9NVI1 1328 aa24.45■■□□□ 1.5
CCDC28A-203ENST00000617445 ITGBL1O95965 494 aaPredicted RBP24.45■■□□□ 1.5
CCDC28A-203ENST00000617445 SCNN1DP51172 638 aa24.45■■□□□ 1.5
CCDC28A-203ENST00000617445 CXCL9Q07325 125 aa24.45■■□□□ 1.5
CCDC28A-203ENST00000617445 TNIP1Q15025 636 aa24.45■■□□□ 1.5
CCDC28A-203ENST00000617445 NSFL1CQ9UNZ2 370 aaKnown RBP24.45■■□□□ 1.5
CCDC28A-203ENST00000617445 CDHR2Q9BYE9 1310 aa24.44■■□□□ 1.5
CCDC28A-203ENST00000617445 USP50Q70EL3 339 aaPredicted RBP24.44■■□□□ 1.5
CCDC28A-203ENST00000617445 WASHC4Q2M389 1173 aa24.43■■□□□ 1.5
CCDC28A-203ENST00000617445 CIAPIN1Q6FI81 312 aa24.43■■□□□ 1.5
CCDC28A-203ENST00000617445 EYA3Q99504 573 aa24.43■■□□□ 1.5
CCDC28A-203ENST00000617445 SALL2Q9Y467 1007 aaPredicted RBP24.43■■□□□ 1.5
CCDC28A-203ENST00000617445 IGKV5-2P06315 115 aa24.42■■□□□ 1.5
CCDC28A-203ENST00000617445 EPS15P42566 896 aa24.42■■□□□ 1.5
CCDC28A-203ENST00000617445 FAM9BQ8IZU0 186 aa24.42■■□□□ 1.5
CCDC28A-203ENST00000617445 CNTROBQ8N137 903 aa24.42■■□□□ 1.5
CCDC28A-203ENST00000617445 GPRC5DQ9NZD1 345 aa24.42■■□□□ 1.5
CCDC28A-203ENST00000617445 VAMP4O75379 141 aa24.41■■□□□ 1.5
CCDC28A-203ENST00000617445 DUOX1Q9NRD9 1551 aa24.41■■□□□ 1.5
CCDC28A-203ENST00000617445 TMEM88BA6NKF7 163 aa24.4■■□□□ 1.5
CCDC28A-203ENST00000617445 C6orf229H3BNL8 230 aa24.4■■□□□ 1.5
CCDC28A-203ENST00000617445 GPSM2P81274 684 aa24.4■■□□□ 1.5
CCDC28A-203ENST00000617445 FLIIQ13045 1269 aa24.4■■□□□ 1.5
CCDC28A-203ENST00000617445 MYH16Q9H6N6 1097 aa24.4■■□□□ 1.5
CCDC28A-203ENST00000617445 ADARB2Q9NS39 739 aaKnown RBP24.4■■□□□ 1.5
CCDC28A-203ENST00000617445 PODXL2Q9NZ53 605 aa24.4■■□□□ 1.5
CCDC28A-203ENST00000617445 LTBP1Q14766 1721 aa24.4■■□□□ 1.5
CCDC28A-203ENST00000617445 NEURL1BA8MQ27 555 aa24.39■■□□□ 1.49
CCDC28A-203ENST00000617445 G2E3Q7L622 706 aa24.39■■□□□ 1.49
CCDC28A-203ENST00000617445 SEC31BQ9NQW1 1179 aa24.39■■□□□ 1.49
CCDC28A-203ENST00000617445 POLLQ9UGP5 575 aa24.39■■□□□ 1.49
CCDC28A-203ENST00000617445 EXOSC9Q06265 439 aaKnown RBP24.38■■□□□ 1.49
CCDC28A-203ENST00000617445 MAP1SQ66K74 1059 aaPredicted RBP24.38■■□□□ 1.49
CCDC28A-203ENST00000617445 ANKRD18AQ8IVF6 992 aa24.38■■□□□ 1.49
CCDC28A-203ENST00000617445 BCL2L13Q9BXK5 485 aa24.38■■□□□ 1.49
CCDC28A-203ENST00000617445 MYH3P11055 1940 aa24.37■■□□□ 1.49
CCDC28A-203ENST00000617445 RAD17O75943 681 aa24.37■■□□□ 1.49
CCDC28A-203ENST00000617445 GMPSP49915 693 aaPredicted RBP24.37■■□□□ 1.49
CCDC28A-203ENST00000617445 CTSWP56202 376 aa24.37■■□□□ 1.49
CCDC28A-203ENST00000617445 FKBP5Q13451 457 aaPredicted RBP24.37■■□□□ 1.49
CCDC28A-203ENST00000617445 TBC1D16Q8TBP0 767 aa24.37■■□□□ 1.49
CCDC28A-203ENST00000617445 JARID2Q92833 1246 aaPredicted RBP24.37■■□□□ 1.49
CCDC28A-203ENST00000617445 CDC5LQ99459 802 aaKnown RBP24.37■■□□□ 1.49
CCDC28A-203ENST00000617445 YDJCA8MPS7 323 aa24.36■■□□□ 1.49
CCDC28A-203ENST00000617445 H7C1W4 665 aa24.36■■□□□ 1.49
CCDC28A-203ENST00000617445 DNAAF4Q8WXU2 420 aa24.36■■□□□ 1.49
CCDC28A-203ENST00000617445 ZC3H12CQ9C0D7 883 aaKnown RBP24.36■■□□□ 1.49
CCDC28A-203ENST00000617445 ANKIB1Q9P2G1 1089 aa24.36■■□□□ 1.49
CCDC28A-203ENST00000617445 RTL9Q8NET4 1388 aa24.35■■□□□ 1.49
CCDC28A-203ENST00000617445 CWF19L2Q2TBE0 894 aaKnown RBP24.35■■□□□ 1.49
CCDC28A-203ENST00000617445 LINS1Q8NG48 757 aa24.35■■□□□ 1.49
CCDC28A-203ENST00000617445 TTLL11Q8NHH1 800 aa24.35■■□□□ 1.49
CCDC28A-203ENST00000617445 GGA1Q9UJY5 639 aa24.35■■□□□ 1.49
CCDC28A-203ENST00000617445 PCNTO95613 3336 aa24.35■■□□□ 1.49
CCDC28A-203ENST00000617445 COL4A1P02462 1669 aa24.34■■□□□ 1.49
CCDC28A-203ENST00000617445 RIMBP2O15034 1052 aa24.34■■□□□ 1.49
CCDC28A-203ENST00000617445 GCKRQ14397 625 aa24.34■■□□□ 1.49
CCDC28A-203ENST00000617445 DPF2Q92785 391 aa24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms