RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 MBIPQ9NS73 344 aa17.11■□□□□ 0.33
RPS28-204ENST00000602140 ZNRF3Q9ULT6 936 aa17.11■□□□□ 0.33
RPS28-204ENST00000602140 APAF1O14727 1248 aa17.1■□□□□ 0.33
RPS28-204ENST00000602140 CXCL9Q07325 125 aa17.1■□□□□ 0.33
RPS28-204ENST00000602140 USP50Q70EL3 339 aaPredicted RBP17.1■□□□□ 0.33
RPS28-204ENST00000602140 FAM89AQ96GI7 184 aa17.1■□□□□ 0.33
RPS28-204ENST00000602140 HYPKQ9NX55 129 aa17.1■□□□□ 0.33
RPS28-204ENST00000602140 CAPN15O75808 1086 aa17.09■□□□□ 0.33
RPS28-204ENST00000602140 ZNF853P0CG23 659 aa17.09■□□□□ 0.33
RPS28-204ENST00000602140 KIAA2012Q0VF49 1180 aa17.09■□□□□ 0.33
RPS28-204ENST00000602140 RASSF10A6NK89 507 aa17.08■□□□□ 0.32
RPS28-204ENST00000602140 FMR1Q06787 632 aaKnown RBP eCLIP17.08■□□□□ 0.326e-7■□□□□ 10.3
RPS28-204ENST00000602140 DEFB115Q30KQ5 88 aa17.08■□□□□ 0.32
RPS28-204ENST00000602140 RTL5Q5HYW3 569 aaPredicted RBP17.08■□□□□ 0.32
RPS28-204ENST00000602140 TMC4Q7Z404 712 aa17.08■□□□□ 0.32
RPS28-204ENST00000602140 ADARB2Q9NS39 739 aaKnown RBP17.08■□□□□ 0.32
RPS28-204ENST00000602140 GPRC5DQ9NZD1 345 aa17.08■□□□□ 0.32
RPS28-204ENST00000602140 FOXN1O15353 648 aa17.07■□□□□ 0.32
RPS28-204ENST00000602140 RAD17O75943 681 aa17.07■□□□□ 0.32
RPS28-204ENST00000602140 CIAPIN1Q6FI81 312 aa17.07■□□□□ 0.32
RPS28-204ENST00000602140 IFT57Q9NWB7 429 aa17.07■□□□□ 0.32
RPS28-204ENST00000602140 ABT1Q9ULW3 272 aaKnown RBP17.07■□□□□ 0.32
RPS28-204ENST00000602140 TAF1P21675 1872 aa17.07■□□□□ 0.32
RPS28-204ENST00000602140 DDX60Q8IY21 1712 aaKnown RBP17.07■□□□□ 0.32
RPS28-204ENST00000602140 ELL2O00472 640 aaPredicted RBP17.06■□□□□ 0.32
RPS28-204ENST00000602140 GMPSP49915 693 aaPredicted RBP17.06■□□□□ 0.32
RPS28-204ENST00000602140 GNAI1P63096 354 aa17.06■□□□□ 0.32
RPS28-204ENST00000602140 TRIM28Q13263 835 aaKnown RBP17.06■□□□□ 0.32
RPS28-204ENST00000602140 SF3B3Q15393 1217 aaKnown RBP17.06■□□□□ 0.32
RPS28-204ENST00000602140 RIC3Q7Z5B4 369 aa17.06■□□□□ 0.32
RPS28-204ENST00000602140 CELF1Q92879 486 aaKnown RBP17.06■□□□□ 0.32
RPS28-204ENST00000602140 TRAF5O00463 557 aa17.05■□□□□ 0.32
RPS28-204ENST00000602140 IRS4O14654 1257 aaPredicted RBP17.05■□□□□ 0.32
RPS28-204ENST00000602140 CALD1Q05682 793 aaKnown RBP17.05■□□□□ 0.32
RPS28-204ENST00000602140 AIDAQ96BJ3 306 aa17.05■□□□□ 0.32
RPS28-204ENST00000602140 BCL2L13Q9BXK5 485 aa17.05■□□□□ 0.32
RPS28-204ENST00000602140 PHAXQ9H814 394 aaKnown RBP17.05■□□□□ 0.32
RPS28-204ENST00000602140 DUOX1Q9NRD9 1551 aa17.04■□□□□ 0.32
RPS28-204ENST00000602140 YDJCA8MPS7 323 aa17.04■□□□□ 0.32
RPS28-204ENST00000602140 GOLGA2Q08379 1002 aa17.04■□□□□ 0.32
RPS28-204ENST00000602140 TNIP1Q15025 636 aa17.04■□□□□ 0.32
RPS28-204ENST00000602140 NSFL1CQ9UNZ2 370 aaKnown RBP17.04■□□□□ 0.32
RPS28-204ENST00000602140 WDR33Q9C0J8 1336 aaKnown RBP17.03■□□□□ 0.32
RPS28-204ENST00000602140 WASHC4Q2M389 1173 aa17.03■□□□□ 0.32
RPS28-204ENST00000602140 CST9Q5W186 159 aa17.03■□□□□ 0.32
RPS28-204ENST00000602140 C8orf58Q8NAV2 365 aa17.03■□□□□ 0.32
RPS28-204ENST00000602140 WBP1LQ9NX94 342 aa17.03■□□□□ 0.32
RPS28-204ENST00000602140 LRRC37AA6NMS7 1700 aa17.03■□□□□ 0.32
RPS28-204ENST00000602140 CDHR2Q9BYE9 1310 aa17.02■□□□□ 0.32
RPS28-204ENST00000602140 COL4A1P02462 1669 aa17.02■□□□□ 0.32
RPS28-204ENST00000602140 CTCFP49711 727 aaPredicted RBP17.02■□□□□ 0.32
RPS28-204ENST00000602140 ZBTB38Q8NAP3 1195 aaPredicted RBP17.02■□□□□ 0.32
RPS28-204ENST00000602140 MYD88Q99836 296 aa17.02■□□□□ 0.32
RPS28-204ENST00000602140 C6orf229H3BNL8 230 aa17.01■□□□□ 0.31
RPS28-204ENST00000602140 RIMBP2O15034 1052 aa17.01■□□□□ 0.31
RPS28-204ENST00000602140 RPS8P62241 208 aaKnown RBP17.01■□□□□ 0.31
RPS28-204ENST00000602140 GPSM2P81274 684 aa17.01■□□□□ 0.31
RPS28-204ENST00000602140 PAXIP1Q6ZW49 1069 aaPredicted RBP17.01■□□□□ 0.31
RPS28-204ENST00000602140 DBNDD1Q9H9R9 158 aa17.01■□□□□ 0.31
RPS28-204ENST00000602140 PRDM10Q9NQV6 1147 aa17.01■□□□□ 0.31
RPS28-204ENST00000602140 POLLQ9UGP5 575 aa17.01■□□□□ 0.31
RPS28-204ENST00000602140 CNOT7Q9UIV1 285 aaKnown RBP17.01■□□□□ 0.31
RPS28-204ENST00000602140 SHTN1A0MZ66 631 aa17■□□□□ 0.31
RPS28-204ENST00000602140 HIRAP54198 1017 aaPredicted RBP17■□□□□ 0.31
RPS28-204ENST00000602140 CAPNS2Q96L46 248 aa17■□□□□ 0.31
RPS28-204ENST00000602140 GLIS2Q9BZE0 524 aaPredicted RBP17■□□□□ 0.31
RPS28-204ENST00000602140 PGAP2Q9UHJ9 254 aa17■□□□□ 0.31
RPS28-204ENST00000602140 ZBTB12Q9Y330 459 aaPredicted RBP17■□□□□ 0.31
RPS28-204ENST00000602140 H7C1D1 291 aa16.99■□□□□ 0.31
RPS28-204ENST00000602140 PSMD14O00487 310 aa16.99■□□□□ 0.31
RPS28-204ENST00000602140 HSP90B1P14625 803 aaKnown RBP16.99■□□□□ 0.31
RPS28-204ENST00000602140 LBX1P52954 281 aa16.99■□□□□ 0.31
RPS28-204ENST00000602140 MAP2K1Q02750 393 aaPredicted RBP16.99■□□□□ 0.31
RPS28-204ENST00000602140 GRM1Q13255 1194 aa16.99■□□□□ 0.31
RPS28-204ENST00000602140 CCDC30Q5VVM6 783 aa16.99■□□□□ 0.31
RPS28-204ENST00000602140 CYP4F22Q6NT55 531 aa16.99■□□□□ 0.31
RPS28-204ENST00000602140 CCDC191Q8NCU4 936 aa16.99■□□□□ 0.31
RPS28-204ENST00000602140 TRPM4Q8TD43 1214 aa16.99■□□□□ 0.31
RPS28-204ENST00000602140 ZC3H15Q8WU90 426 aaKnown RBP16.99■□□□□ 0.31
RPS28-204ENST00000602140 JARID2Q92833 1246 aaPredicted RBP16.99■□□□□ 0.31
RPS28-204ENST00000602140 SEC31BQ9NQW1 1179 aa16.99■□□□□ 0.31
RPS28-204ENST00000602140 TLL2Q9Y6L7 1015 aa16.99■□□□□ 0.31
RPS28-204ENST00000602140 CELF2O95319 508 aaKnown RBP16.98■□□□□ 0.31
RPS28-204ENST00000602140 DDX58O95786 925 aaKnown RBP16.98■□□□□ 0.31
RPS28-204ENST00000602140 PCCAP05165 728 aaPredicted RBP16.98■□□□□ 0.31
RPS28-204ENST00000602140 ECE1P42892 770 aa16.98■□□□□ 0.31
RPS28-204ENST00000602140 DOK7Q18PE1 504 aa16.98■□□□□ 0.31
RPS28-204ENST00000602140 CCDC184Q52MB2 194 aa16.98■□□□□ 0.31
RPS28-204ENST00000602140 MICALL2Q8IY33 904 aa16.98■□□□□ 0.31
RPS28-204ENST00000602140 TSPYL6Q8N831 410 aa16.98■□□□□ 0.31
RPS28-204ENST00000602140 TBC1D16Q8TBP0 767 aa16.98■□□□□ 0.31
RPS28-204ENST00000602140 GPR101Q96P66 508 aaPredicted RBP16.98■□□□□ 0.31
RPS28-204ENST00000602140 EYA3Q99504 573 aa16.98■□□□□ 0.31
RPS28-204ENST00000602140 METTL22Q9BUU2 404 aaPredicted RBP16.98■□□□□ 0.31
RPS28-204ENST00000602140 CHMP4AQ9BY43 222 aa16.98■□□□□ 0.31
RPS28-204ENST00000602140 CWC25Q9NXE8 425 aaPredicted RBP16.98■□□□□ 0.31
RPS28-204ENST00000602140 TRPM7Q96QT4 1865 aa16.98■□□□□ 0.31
RPS28-204ENST00000602140 ECE2O60344 883 aa16.97■□□□□ 0.31
RPS28-204ENST00000602140 DPF2Q92785 391 aa16.97■□□□□ 0.31
RPS28-204ENST00000602140 KCNQ5Q9NR82 932 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms