RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 ECE1P42892 770 aa11.32□□□□□ -0.6
TRIM28-214ENST00000600840 DGKZQ13574 1117 aa11.32□□□□□ -0.6
TRIM28-214ENST00000600840 CST9Q5W186 159 aa11.32□□□□□ -0.6
TRIM28-214ENST00000600840 LAS1LQ9Y4W2 734 aaKnown RBP11.32□□□□□ -0.6
TRIM28-214ENST00000600840 ERBB4Q15303 1308 aa11.32□□□□□ -0.6
TRIM28-214ENST00000600840 FANCIQ9NVI1 1328 aa11.32□□□□□ -0.6
TRIM28-214ENST00000600840 TAF1P21675 1872 aa11.32□□□□□ -0.6
TRIM28-214ENST00000600840 LAMB2P55268 1798 aa11.31□□□□□ -0.6
TRIM28-214ENST00000600840 FZD9O00144 591 aa11.31□□□□□ -0.6
TRIM28-214ENST00000600840 AIMP1Q12904 312 aaKnown RBP11.31□□□□□ -0.6
TRIM28-214ENST00000600840 COPS6Q7L5N1 327 aa11.31□□□□□ -0.6
TRIM28-214ENST00000600840 TSPYL6Q8N831 410 aa11.31□□□□□ -0.6
TRIM28-214ENST00000600840 C8orf58Q8NAV2 365 aa11.31□□□□□ -0.6
TRIM28-214ENST00000600840 XAGE3Q8WTP9 111 aa11.31□□□□□ -0.6
TRIM28-214ENST00000600840 ANKRD36CQ5JPF3 1778 aa11.31□□□□□ -0.6
TRIM28-214ENST00000600840 ALDH1B1P30837 517 aa11.3□□□□□ -0.6
TRIM28-214ENST00000600840 IARSP41252 1262 aaKnown RBP11.3□□□□□ -0.6
TRIM28-214ENST00000600840 EPS15P42566 896 aa11.3□□□□□ -0.6
TRIM28-214ENST00000600840 SOX10P56693 466 aa11.3□□□□□ -0.6
TRIM28-214ENST00000600840 GPC2Q8N158 579 aa11.3□□□□□ -0.6
TRIM28-214ENST00000600840 NYXQ9GZU5 481 aa11.3□□□□□ -0.6
TRIM28-214ENST00000600840 GJA3Q9Y6H8 435 aa11.3□□□□□ -0.6
TRIM28-214ENST00000600840 TLL2Q9Y6L7 1015 aa11.3□□□□□ -0.6
TRIM28-214ENST00000600840 IBTKQ9P2D0 1353 aaPredicted RBP11.29□□□□□ -0.6
TRIM28-214ENST00000600840 TCERG1O14776 1098 aaKnown RBP11.29□□□□□ -0.6
TRIM28-214ENST00000600840 VAMP4O75379 141 aa11.29□□□□□ -0.6
TRIM28-214ENST00000600840 HOXA10P31260 410 aaPredicted RBP11.29□□□□□ -0.6
TRIM28-214ENST00000600840 EXOSC9Q06265 439 aaKnown RBP11.29□□□□□ -0.6
TRIM28-214ENST00000600840 MYH16Q9H6N6 1097 aa11.29□□□□□ -0.6
TRIM28-214ENST00000600840 RIC1Q4ADV7 1423 aa11.28□□□□□ -0.6
TRIM28-214ENST00000600840 SCNN1DP51172 638 aa11.28□□□□□ -0.6
TRIM28-214ENST00000600840 SLC10A5Q5PT55 438 aa11.28□□□□□ -0.6
TRIM28-214ENST00000600840 RTKN2Q8IZC4 609 aa11.28□□□□□ -0.6
TRIM28-214ENST00000600840 YTHDC1Q96MU7 727 aaKnown RBP11.28□□□□□ -0.6
TRIM28-214ENST00000600840 CHPF2Q9P2E5 772 aa11.28□□□□□ -0.6
TRIM28-214ENST00000600840 PDE4DIPQ5VU43 2346 aa11.27□□□□□ -0.6
TRIM28-214ENST00000600840 COL4A1P02462 1669 aa11.27□□□□□ -0.6
TRIM28-214ENST00000600840 HCLS1P14317 486 aaPredicted RBP11.27□□□□□ -0.61
TRIM28-214ENST00000600840 LMOD1P29536 600 aaPredicted RBP11.27□□□□□ -0.61
TRIM28-214ENST00000600840 MAP2K2P36507 400 aa11.27□□□□□ -0.61
TRIM28-214ENST00000600840 CIAPIN1Q6FI81 312 aa11.27□□□□□ -0.61
TRIM28-214ENST00000600840 PPP1R42Q7Z4L9 355 aa11.27□□□□□ -0.61
TRIM28-214ENST00000600840 NLRP10Q86W26 655 aa11.27□□□□□ -0.61
TRIM28-214ENST00000600840 RPGRQ92834 1020 aaKnown RBP11.27□□□□□ -0.61
TRIM28-214ENST00000600840 CRAMP1Q96RY5 1269 aa11.27□□□□□ -0.61
TRIM28-214ENST00000600840 ZIC5Q96T25 663 aa11.27□□□□□ -0.61
TRIM28-214ENST00000600840 UTP14AQ9BVJ6 771 aaKnown RBP11.27□□□□□ -0.61
TRIM28-214ENST00000600840 DDX60Q8IY21 1712 aaKnown RBP11.26□□□□□ -0.61
TRIM28-214ENST00000600840 HOXB7P09629 217 aa11.26□□□□□ -0.61
TRIM28-214ENST00000600840 TCIRG1Q13488 830 aa11.26□□□□□ -0.61
TRIM28-214ENST00000600840 PARP10Q53GL7 1025 aa11.26□□□□□ -0.61
TRIM28-214ENST00000600840 SAPCD2Q86UD0 394 aa11.26□□□□□ -0.61
TRIM28-214ENST00000600840 RBM17Q96I25 401 aaKnown RBP11.26□□□□□ -0.61
TRIM28-214ENST00000600840 PSMD1Q99460 953 aa11.26□□□□□ -0.61
TRIM28-214ENST00000600840 TNRC18O15417 2968 aaPredicted RBP11.26□□□□□ -0.61
TRIM28-214ENST00000600840 ELL2O00472 640 aaPredicted RBP11.25□□□□□ -0.61
TRIM28-214ENST00000600840 PPEF1O14829 653 aaPredicted RBP11.25□□□□□ -0.61
TRIM28-214ENST00000600840 CELF2O95319 508 aaKnown RBP11.25□□□□□ -0.61
TRIM28-214ENST00000600840 EIF6P56537 245 aaKnown RBP11.25□□□□□ -0.61
TRIM28-214ENST00000600840 TWISTNBQ3B726 338 aaPredicted RBP11.25□□□□□ -0.61
TRIM28-214ENST00000600840 HDGFL1Q5TGJ6 251 aa11.25□□□□□ -0.61
TRIM28-214ENST00000600840 JDP2Q8WYK2 163 aa11.25□□□□□ -0.61
TRIM28-214ENST00000600840 NLRP3Q96P20 1036 aa11.25□□□□□ -0.61
TRIM28-214ENST00000600840 ABCC4O15439 1325 aa11.25□□□□□ -0.61
TRIM28-214ENST00000600840 ATP5J2-PTCD1G3V325 749 aa11.24□□□□□ -0.61
TRIM28-214ENST00000600840 CA12O43570 354 aa11.24□□□□□ -0.61
TRIM28-214ENST00000600840 BRPF1P55201 1214 aaPredicted RBP11.24□□□□□ -0.61
TRIM28-214ENST00000600840 ISCA1Q9BUE6 129 aa11.24□□□□□ -0.61
TRIM28-214ENST00000600840 GLIS2Q9BZE0 524 aaPredicted RBP11.24□□□□□ -0.61
TRIM28-214ENST00000600840 PHAXQ9H814 394 aaKnown RBP11.24□□□□□ -0.61
TRIM28-214ENST00000600840 ZNF408Q9H9D4 720 aa11.24□□□□□ -0.61
TRIM28-214ENST00000600840 TRMT112Q9UI30 125 aaKnown RBP11.24□□□□□ -0.61
TRIM28-214ENST00000600840 CT47B1P0C2W7 299 aaPredicted RBP11.23□□□□□ -0.61
TRIM28-214ENST00000600840 AOC3Q16853 763 aa11.23□□□□□ -0.61
TRIM28-214ENST00000600840 PRPF38BQ5VTL8 546 aaKnown RBP11.23□□□□□ -0.61
TRIM28-214ENST00000600840 ANKRD13DQ6ZTN6 518 aa11.23□□□□□ -0.61
TRIM28-214ENST00000600840 USP50Q70EL3 339 aaPredicted RBP11.23□□□□□ -0.61
TRIM28-214ENST00000600840 PLBD2Q8NHP8 589 aa11.23□□□□□ -0.61
TRIM28-214ENST00000600840 ATP6V0A2Q9Y487 856 aa11.23□□□□□ -0.61
TRIM28-214ENST00000600840 HSP90AB3PQ58FF7 597 aa11.22□□□□□ -0.61
TRIM28-214ENST00000600840 RTL5Q5HYW3 569 aaPredicted RBP11.22□□□□□ -0.61
TRIM28-214ENST00000600840 CC2D2BQ6DHV5 1058 aa11.22□□□□□ -0.61
TRIM28-214ENST00000600840 DLK2Q6UY11 383 aa11.22□□□□□ -0.61
TRIM28-214ENST00000600840 LARGE2Q8N3Y3 721 aa11.22□□□□□ -0.61
TRIM28-214ENST00000600840 FAM89AQ96GI7 184 aa11.22□□□□□ -0.61
TRIM28-214ENST00000600840 DBF4Q9UBU7 674 aaPredicted RBP11.22□□□□□ -0.61
TRIM28-214ENST00000600840 DUOX1Q9NRD9 1551 aa11.21□□□□□ -0.61
TRIM28-214ENST00000600840 SH3TC1Q8TE82 1336 aa11.21□□□□□ -0.61
TRIM28-214ENST00000600840 RARSP54136 660 aaKnown RBP11.21□□□□□ -0.61
TRIM28-214ENST00000600840 PPIP5K2O43314 1243 aa11.2□□□□□ -0.62
TRIM28-214ENST00000600840 SP8Q8IXZ3 490 aa11.2□□□□□ -0.62
TRIM28-214ENST00000600840 MRPL50Q8N5N7 158 aaKnown RBP11.2□□□□□ -0.62
TRIM28-214ENST00000600840 SSH1Q8WYL5 1049 aa11.2□□□□□ -0.62
TRIM28-214ENST00000600840 JARID2Q92833 1246 aaPredicted RBP11.2□□□□□ -0.62
TRIM28-214ENST00000600840 CELF1Q92879 486 aaKnown RBP11.2□□□□□ -0.62
TRIM28-214ENST00000600840 RTFDC1Q9BY42 306 aaPredicted RBP11.2□□□□□ -0.62
TRIM28-214ENST00000600840 GPRC5DQ9NZD1 345 aa11.2□□□□□ -0.62
TRIM28-214ENST00000600840 LRRC37AA6NMS7 1700 aa11.19□□□□□ -0.62
TRIM28-214ENST00000600840 BBOX1O75936 387 aa11.19□□□□□ -0.62
TRIM28-214ENST00000600840 CXCL9Q07325 125 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms