RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 GPR162Q16538 588 aa24.37■■□□□ 1.49
UPF1-209ENST00000600310 CCDC152Q4G0S7 254 aa24.37■■□□□ 1.49
UPF1-209ENST00000600310 DDX46Q7L014 1031 aaKnown RBP24.37■■□□□ 1.49
UPF1-209ENST00000600310 PELP1Q8IZL8 1130 aaKnown RBP24.37■■□□□ 1.49
UPF1-209ENST00000600310 TTLL11Q8NHH1 800 aa24.37■■□□□ 1.49
UPF1-209ENST00000600310 LAMB2P55268 1798 aa24.37■■□□□ 1.49
UPF1-209ENST00000600310 PLIN1O60240 522 aa24.36■■□□□ 1.49
UPF1-209ENST00000600310 PRPF40BQ6NWY9 871 aaKnown RBP24.36■■□□□ 1.49
UPF1-209ENST00000600310 BRCA1P38398 1863 aaKnown RBP24.36■■□□□ 1.49
UPF1-209ENST00000600310 CSF1RP07333 972 aa24.35■■□□□ 1.49
UPF1-209ENST00000600310 FOXO4P98177 505 aa24.35■■□□□ 1.49
UPF1-209ENST00000600310 SUCLG2Q96I99 432 aa24.35■■□□□ 1.49
UPF1-209ENST00000600310 EPHA10Q5JZY3 1008 aa24.34■■□□□ 1.49
UPF1-209ENST00000600310 PANK1Q8TE04 598 aa24.34■■□□□ 1.49
UPF1-209ENST00000600310 KAZALD1Q96I82 304 aa24.34■■□□□ 1.49
UPF1-209ENST00000600310 RTL9Q8NET4 1388 aa24.33■■□□□ 1.49
UPF1-209ENST00000600310 UBTFL1P0CB47 393 aaPredicted RBP24.33■■□□□ 1.49
UPF1-209ENST00000600310 GRAPQ13588 217 aa24.33■■□□□ 1.49
UPF1-209ENST00000600310 GRAPLQ8TC17 118 aaPredicted RBP24.33■■□□□ 1.49
UPF1-209ENST00000600310 C7orf43Q8WVR3 580 aa24.33■■□□□ 1.49
UPF1-209ENST00000600310 CCDC85AQ96PX6 553 aaPredicted RBP24.33■■□□□ 1.49
UPF1-209ENST00000600310 MEIS3Q99687 375 aa24.33■■□□□ 1.49
UPF1-209ENST00000600310 GRIN3BO60391 1043 aa24.32■■□□□ 1.48
UPF1-209ENST00000600310 BBOX1O75936 387 aa24.32■■□□□ 1.48
UPF1-209ENST00000600310 PDE3AQ14432 1141 aa24.32■■□□□ 1.48
UPF1-209ENST00000600310 GREM2Q9H772 168 aa24.32■■□□□ 1.48
UPF1-209ENST00000600310 HDAC5Q9UQL6 1122 aa24.32■■□□□ 1.48
UPF1-209ENST00000600310 GNAI3P08754 354 aa24.31■■□□□ 1.48
UPF1-209ENST00000600310 ITPRIPQ8IWB1 547 aa24.31■■□□□ 1.48
UPF1-209ENST00000600310 SEC31BQ9NQW1 1179 aa24.31■■□□□ 1.48
UPF1-209ENST00000600310 C21orf2O43822 256 aa24.3■■□□□ 1.48
UPF1-209ENST00000600310 RABL6Q3YEC7 729 aaPredicted RBP24.3■■□□□ 1.48
UPF1-209ENST00000600310 LMBR1LQ6UX01 489 aa24.3■■□□□ 1.48
UPF1-209ENST00000600310 CELF1Q92879 486 aaKnown RBP24.3■■□□□ 1.48
UPF1-209ENST00000600310 PPEF1O14829 653 aaPredicted RBP24.29■■□□□ 1.48
UPF1-209ENST00000600310 RRP1P56182 461 aaKnown RBP24.29■■□□□ 1.48
UPF1-209ENST00000600310 RPS8P62241 208 aaKnown RBP24.29■■□□□ 1.48
UPF1-209ENST00000600310 FAM161AQ3B820 660 aa24.29■■□□□ 1.48
UPF1-209ENST00000600310 BICC1Q9H694 974 aaKnown RBP24.29■■□□□ 1.48
UPF1-209ENST00000600310 SLX4Q8IY92 1834 aa24.28■■□□□ 1.48
UPF1-209ENST00000600310 SOGA3Q5TF21 947 aa24.28■■□□□ 1.48
UPF1-209ENST00000600310 ANKRD44Q8N8A2 993 aa24.28■■□□□ 1.48
UPF1-209ENST00000600310 CDC5LQ99459 802 aaKnown RBP24.28■■□□□ 1.48
UPF1-209ENST00000600310 ZNF219Q9P2Y4 722 aaPredicted RBP24.28■■□□□ 1.48
UPF1-209ENST00000600310 ZBTB7BO15156 539 aaPredicted RBP24.27■■□□□ 1.48
UPF1-209ENST00000600310 ITGA6P23229 1130 aa24.27■■□□□ 1.48
UPF1-209ENST00000600310 MVPQ14764 893 aaKnown RBP24.27■■□□□ 1.48
UPF1-209ENST00000600310 C20orf194Q5TEA3 1177 aa24.27■■□□□ 1.48
UPF1-209ENST00000600310 CC2D2BQ6DHV5 1058 aa24.27■■□□□ 1.48
UPF1-209ENST00000600310 TMC4Q7Z404 712 aa24.27■■□□□ 1.48
UPF1-209ENST00000600310 ATP6V0A2Q9Y487 856 aa24.27■■□□□ 1.48
UPF1-209ENST00000600310 ANKRD18AQ8IVF6 992 aa24.26■■□□□ 1.47
UPF1-209ENST00000600310 SP8Q8IXZ3 490 aa24.26■■□□□ 1.47
UPF1-209ENST00000600310 COG6Q9Y2V7 657 aa24.26■■□□□ 1.47
UPF1-209ENST00000600310 CHMP3Q9Y3E7 222 aa24.26■■□□□ 1.47
UPF1-209ENST00000600310 LRRFIP2Q9Y608 721 aaKnown RBP24.26■■□□□ 1.47
UPF1-209ENST00000600310 ARFGEF1Q9Y6D6 1849 aa24.26■■□□□ 1.47
UPF1-209ENST00000600310 ANKRD18BA2A2Z9 1011 aa24.25■■□□□ 1.47
UPF1-209ENST00000600310 IFIT5Q13325 482 aaKnown RBP24.25■■□□□ 1.47
UPF1-209ENST00000600310 CCDC93Q567U6 631 aa24.25■■□□□ 1.47
UPF1-209ENST00000600310 ARHGAP27Q6ZUM4 889 aa24.25■■□□□ 1.47
UPF1-209ENST00000600310 ZNF784Q8NCA9 323 aaPredicted RBP24.25■■□□□ 1.47
UPF1-209ENST00000600310 MYH3P11055 1940 aa24.25■■□□□ 1.47
UPF1-209ENST00000600310 GNAI2P04899 355 aa24.24■■□□□ 1.47
UPF1-209ENST00000600310 OLFM4Q6UX06 510 aa24.24■■□□□ 1.47
UPF1-209ENST00000600310 DDX19BQ9UMR2 479 aa24.24■■□□□ 1.47
UPF1-209ENST00000600310 CCDC57Q2TAC2 916 aa24.23■■□□□ 1.47
UPF1-209ENST00000600310 GRIPAP1Q4V328 841 aa24.23■■□□□ 1.47
UPF1-209ENST00000600310 TMX4Q9H1E5 349 aaPredicted RBP24.23■■□□□ 1.47
UPF1-209ENST00000600310 COL4A1P02462 1669 aa24.23■■□□□ 1.47
UPF1-209ENST00000600310 RTKN2Q8IZC4 609 aa24.22■■□□□ 1.47
UPF1-209ENST00000600310 CHD4Q14839 1912 aa24.22■■□□□ 1.47
UPF1-209ENST00000600310 SNED1Q8TER0 1413 aa24.21■■□□□ 1.47
UPF1-209ENST00000600310 IGHMBP2P38935 993 aaKnown RBP24.21■■□□□ 1.47
UPF1-209ENST00000600310 SLC51AQ86UW1 340 aa24.21■■□□□ 1.47
UPF1-209ENST00000600310 BSDC1Q9NW68 430 aaPredicted RBP24.21■■□□□ 1.47
UPF1-209ENST00000600310 CACNA1SQ13698 1873 aa24.2■■□□□ 1.46
UPF1-209ENST00000600310 NFKBIEO00221 500 aa24.2■■□□□ 1.46
UPF1-209ENST00000600310 CHMP4BQ9H444 224 aaKnown RBP24.2■■□□□ 1.46
UPF1-209ENST00000600310 TAF1P21675 1872 aa24.19■■□□□ 1.46
UPF1-209ENST00000600310 LTBP3Q9NS15 1303 aa24.19■■□□□ 1.46
UPF1-209ENST00000600310 MTX1Q13505 466 aa24.19■■□□□ 1.46
UPF1-209ENST00000600310 SUPT16HQ9Y5B9 1047 aaKnown RBP24.19■■□□□ 1.46
UPF1-209ENST00000600310 GOLGB1Q14789 3259 aaKnown RBP24.19■■□□□ 1.46
UPF1-209ENST00000600310 TAF7LQ5H9L4 462 aa24.18■■□□□ 1.46
UPF1-209ENST00000600310 MPHOSPH8Q99549 860 aa24.18■■□□□ 1.46
UPF1-209ENST00000600310 TAOK3Q9H2K8 898 aa24.18■■□□□ 1.46
UPF1-209ENST00000600310 RFX5P48382 616 aaPredicted RBP24.17■■□□□ 1.46
UPF1-209ENST00000600310 FKBP4Q02790 459 aaKnown RBP eCLIP24.17■■□□□ 1.46
UPF1-209ENST00000600310 MPNDQ8N594 471 aa24.17■■□□□ 1.46
UPF1-209ENST00000600310 ZNF594Q96JF6 807 aaPredicted RBP24.17■■□□□ 1.46
UPF1-209ENST00000600310 ZBTB40Q9NUA8 1239 aa24.17■■□□□ 1.46
UPF1-209ENST00000600310 RASSF7Q02833 373 aa24.16■■□□□ 1.46
UPF1-209ENST00000600310 PSMD1Q99460 953 aa24.16■■□□□ 1.46
UPF1-209ENST00000600310 C1orf115Q9H7X2 142 aa24.16■■□□□ 1.46
UPF1-209ENST00000600310 MINPP1Q9UNW1 487 aa24.16■■□□□ 1.46
UPF1-209ENST00000600310 GPSM2P81274 684 aa24.15■■□□□ 1.46
UPF1-209ENST00000600310 DPP8Q6V1X1 898 aaPredicted RBP24.15■■□□□ 1.46
UPF1-209ENST00000600310 LDHAL6AQ6ZMR3 332 aa24.15■■□□□ 1.46
UPF1-209ENST00000600310 RTFDC1Q9BY42 306 aaPredicted RBP24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms