RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 ATP6V0A2Q9Y487 856 aa25.66■■□□□ 1.7
SS18-218ENST00000581021 COL4A5P29400 1685 aa25.66■■□□□ 1.7
SS18-218ENST00000581021 DICER1Q9UPY3 1922 aaKnown RBP25.65■■□□□ 1.7
SS18-218ENST00000581021 H7C1W4 665 aa25.65■■□□□ 1.7
SS18-218ENST00000581021 UBE3BQ7Z3V4 1068 aa25.65■■□□□ 1.7
SS18-218ENST00000581021 RTKN2Q8IZC4 609 aa25.65■■□□□ 1.7
SS18-218ENST00000581021 GPBP1L1Q9HC44 474 aaPredicted RBP25.65■■□□□ 1.7
SS18-218ENST00000581021 LRRC37AA6NMS7 1700 aa25.65■■□□□ 1.7
SS18-218ENST00000581021 SEC31BQ9NQW1 1179 aa25.64■■□□□ 1.7
SS18-218ENST00000581021 PDE8AO60658 829 aa25.63■■□□□ 1.69
SS18-218ENST00000581021 CC2D2BQ6DHV5 1058 aa25.63■■□□□ 1.69
SS18-218ENST00000581021 CCDC85AQ96PX6 553 aaPredicted RBP25.63■■□□□ 1.69
SS18-218ENST00000581021 ZC3H4Q9UPT8 1303 aaKnown RBP25.63■■□□□ 1.69
SS18-218ENST00000581021 DUOX1Q9NRD9 1551 aa25.62■■□□□ 1.69
SS18-218ENST00000581021 BBOX1O75936 387 aa25.62■■□□□ 1.69
SS18-218ENST00000581021 PSMD1Q99460 953 aa25.62■■□□□ 1.69
SS18-218ENST00000581021 NMRK2Q9NPI5 230 aa25.62■■□□□ 1.69
SS18-218ENST00000581021 CTSWP56202 376 aa25.61■■□□□ 1.69
SS18-218ENST00000581021 ALDH1L2Q3SY69 923 aa25.61■■□□□ 1.69
SS18-218ENST00000581021 SP8Q8IXZ3 490 aa25.6■■□□□ 1.69
SS18-218ENST00000581021 SMC4Q9NTJ3 1288 aa25.6■■□□□ 1.69
SS18-218ENST00000581021 KIF3CO14782 793 aa25.59■■□□□ 1.69
SS18-218ENST00000581021 CT47B1P0C2W7 299 aaPredicted RBP25.59■■□□□ 1.69
SS18-218ENST00000581021 SLC4A10Q6U841 1118 aa25.59■■□□□ 1.69
SS18-218ENST00000581021 TTLL11Q8NHH1 800 aa25.59■■□□□ 1.69
SS18-218ENST00000581021 LTBP1Q14766 1721 aa25.58■■□□□ 1.69
SS18-218ENST00000581021 IARSP41252 1262 aaKnown RBP25.58■■□□□ 1.69
SS18-218ENST00000581021 CCDC152Q4G0S7 254 aa25.58■■□□□ 1.69
SS18-218ENST00000581021 PTPRCP08575 1304 aa25.58■■□□□ 1.69
SS18-218ENST00000581021 MYH3P11055 1940 aa25.57■■□□□ 1.68
SS18-218ENST00000581021 HSP90B1P14625 803 aaKnown RBP25.57■■□□□ 1.68
SS18-218ENST00000581021 RARSP54136 660 aaKnown RBP25.57■■□□□ 1.68
SS18-218ENST00000581021 PLA2G12BQ9BX93 195 aa25.57■■□□□ 1.68
SS18-218ENST00000581021 GREM2Q9H772 168 aa25.57■■□□□ 1.68
SS18-218ENST00000581021 ZBED9Q6R2W3 1325 aa25.57■■□□□ 1.68
SS18-218ENST00000581021 RTFDC1Q9BY42 306 aaPredicted RBP25.56■■□□□ 1.68
SS18-218ENST00000581021 RTL9Q8NET4 1388 aa25.56■■□□□ 1.68
SS18-218ENST00000581021 GLTPD2A6NH11 291 aa25.55■■□□□ 1.68
SS18-218ENST00000581021 RPS8P62241 208 aaKnown RBP25.55■■□□□ 1.68
SS18-218ENST00000581021 GRIPAP1Q4V328 841 aa25.55■■□□□ 1.68
SS18-218ENST00000581021 ZNF541Q9H0D2 1346 aa25.55■■□□□ 1.68
SS18-218ENST00000581021 GRM8O00222 908 aa25.54■■□□□ 1.68
SS18-218ENST00000581021 ALDH1L1O75891 902 aa25.54■■□□□ 1.68
SS18-218ENST00000581021 TMC4Q7Z404 712 aa25.54■■□□□ 1.68
SS18-218ENST00000581021 SRCIN1Q9C0H9 1055 aa25.54■■□□□ 1.68
SS18-218ENST00000581021 BRPF1P55201 1214 aaPredicted RBP25.53■■□□□ 1.68
SS18-218ENST00000581021 FOXO4P98177 505 aa25.53■■□□□ 1.68
SS18-218ENST00000581021 FAM161AQ3B820 660 aa25.53■■□□□ 1.68
SS18-218ENST00000581021 EPHA10Q5JZY3 1008 aa25.53■■□□□ 1.68
SS18-218ENST00000581021 DPP8Q6V1X1 898 aaPredicted RBP25.53■■□□□ 1.68
SS18-218ENST00000581021 MPNDQ8N594 471 aa25.53■■□□□ 1.68
SS18-218ENST00000581021 KDM2BQ8NHM5 1336 aa25.53■■□□□ 1.68
SS18-218ENST00000581021 GPSM2P81274 684 aa25.52■■□□□ 1.68
SS18-218ENST00000581021 NOB1Q9ULX3 412 aaKnown RBP25.52■■□□□ 1.68
SS18-218ENST00000581021 CSF1RP07333 972 aa25.51■■□□□ 1.67
SS18-218ENST00000581021 AOC3Q16853 763 aa25.51■■□□□ 1.67
SS18-218ENST00000581021 RRAGCQ9HB90 399 aa25.51■■□□□ 1.67
SS18-218ENST00000581021 WDR90Q96KV7 1748 aa25.51■■□□□ 1.67
SS18-218ENST00000581021 POTECB2RU33 542 aa25.5■■□□□ 1.67
SS18-218ENST00000581021 FZD9O00144 591 aa25.5■■□□□ 1.67
SS18-218ENST00000581021 DDNO94850 711 aaPredicted RBP25.5■■□□□ 1.67
SS18-218ENST00000581021 KAZALD1Q96I82 304 aa25.5■■□□□ 1.67
SS18-218ENST00000581021 SPEF2Q9C093 1822 aa25.5■■□□□ 1.67
SS18-218ENST00000581021 UTYO14607 1347 aa25.49■■□□□ 1.67
SS18-218ENST00000581021 PPIP5K2O43314 1243 aa25.49■■□□□ 1.67
SS18-218ENST00000581021 NBPF7P0C2Y1 421 aaPredicted RBP25.49■■□□□ 1.67
SS18-218ENST00000581021 LARGE2Q8N3Y3 721 aa25.49■■□□□ 1.67
SS18-218ENST00000581021 TMX4Q9H1E5 349 aaPredicted RBP25.49■■□□□ 1.67
SS18-218ENST00000581021 POLLQ9UGP5 575 aa25.49■■□□□ 1.67
SS18-218ENST00000581021 C1QTNF8P60827 252 aa25.48■■□□□ 1.67
SS18-218ENST00000581021 ANKRD18AQ8IVF6 992 aa25.48■■□□□ 1.67
SS18-218ENST00000581021 SUCLG2Q96I99 432 aa25.48■■□□□ 1.67
SS18-218ENST00000581021 GPR101Q96P66 508 aaPredicted RBP25.48■■□□□ 1.67
SS18-218ENST00000581021 C9orf78Q9NZ63 289 aaPredicted RBP25.48■■□□□ 1.67
SS18-218ENST00000581021 NSFL1CQ9UNZ2 370 aaKnown RBP25.48■■□□□ 1.67
SS18-218ENST00000581021 BCAR3O75815 825 aa25.47■■□□□ 1.67
SS18-218ENST00000581021 ITGA6P23229 1130 aa25.47■■□□□ 1.67
SS18-218ENST00000581021 KIAA2012Q0VF49 1180 aa25.46■■□□□ 1.67
SS18-218ENST00000581021 CDC5LQ99459 802 aaKnown RBP25.46■■□□□ 1.67
SS18-218ENST00000581021 WTIPA6NIX2 430 aaPredicted RBP25.45■■□□□ 1.66
SS18-218ENST00000581021 DPY19L2Q6NUT2 758 aa25.45■■□□□ 1.66
SS18-218ENST00000581021 SUPT20HQ8NEM7 779 aa25.45■■□□□ 1.66
SS18-218ENST00000581021 TBC1D16Q8TBP0 767 aa25.45■■□□□ 1.66
SS18-218ENST00000581021 JDP2Q8WYK2 163 aa25.45■■□□□ 1.66
SS18-218ENST00000581021 PODXL2Q9NZ53 605 aa25.45■■□□□ 1.66
SS18-218ENST00000581021 TNNQ9UQP3 1299 aa25.45■■□□□ 1.66
SS18-218ENST00000581021 LMBR1LQ6UX01 489 aa25.44■■□□□ 1.66
SS18-218ENST00000581021 USP44Q9H0E7 712 aa25.44■■□□□ 1.66
SS18-218ENST00000581021 NIM1KQ8IY84 436 aa25.43■■□□□ 1.66
SS18-218ENST00000581021 L3MBTL3Q96JM7 780 aaPredicted RBP25.43■■□□□ 1.66
SS18-218ENST00000581021 VPS33BQ9H267 617 aa25.43■■□□□ 1.66
SS18-218ENST00000581021 BSDC1Q9NW68 430 aaPredicted RBP25.43■■□□□ 1.66
SS18-218ENST00000581021 MINPP1Q9UNW1 487 aa25.43■■□□□ 1.66
SS18-218ENST00000581021 KIF16BQ96L93 1317 aa25.42■■□□□ 1.66
SS18-218ENST00000581021 API5Q9BZZ5 524 aaKnown RBP25.42■■□□□ 1.66
SS18-218ENST00000581021 YDJCA8MPS7 323 aa25.41■■□□□ 1.66
SS18-218ENST00000581021 C6orf229H3BNL8 230 aa25.41■■□□□ 1.66
SS18-218ENST00000581021 UFL1O94874 794 aa25.41■■□□□ 1.66
SS18-218ENST00000581021 VEGFAP15692 232 aaPredicted RBP25.41■■□□□ 1.66
SS18-218ENST00000581021 ANKRD44Q8N8A2 993 aa25.41■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms