RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 FSTL1Q12841 308 aa26.02■■□□□ 1.76
CLK3-225ENST00000569063 TMC4Q7Z404 712 aa26.02■■□□□ 1.76
CLK3-225ENST00000569063 CCER2I3L3R5 266 aa26.01■■□□□ 1.75
CLK3-225ENST00000569063 IGKV5-2P06315 115 aa26■■□□□ 1.75
CLK3-225ENST00000569063 NEXNQ0ZGT2 675 aa26■■□□□ 1.75
CLK3-225ENST00000569063 FLIIQ13045 1269 aa26■■□□□ 1.75
CLK3-225ENST00000569063 JDP2Q8WYK2 163 aa26■■□□□ 1.75
CLK3-225ENST00000569063 RTFDC1Q9BY42 306 aaPredicted RBP26■■□□□ 1.75
CLK3-225ENST00000569063 VPS33BQ9H267 617 aa26■■□□□ 1.75
CLK3-225ENST00000569063 L3MBTL3Q96JM7 780 aaPredicted RBP25.99■■□□□ 1.75
CLK3-225ENST00000569063 ZNF541Q9H0D2 1346 aa25.98■■□□□ 1.75
CLK3-225ENST00000569063 SUPT20HQ8NEM7 779 aa25.98■■□□□ 1.75
CLK3-225ENST00000569063 CACNA1FO60840 1977 aa25.97■■□□□ 1.75
CLK3-225ENST00000569063 PDE8AO60658 829 aa25.97■■□□□ 1.75
CLK3-225ENST00000569063 DPP8Q6V1X1 898 aaPredicted RBP25.97■■□□□ 1.75
CLK3-225ENST00000569063 SMC1BQ8NDV3 1235 aa25.97■■□□□ 1.75
CLK3-225ENST00000569063 CELF1Q92879 486 aaKnown RBP25.97■■□□□ 1.75
CLK3-225ENST00000569063 COL4A5P29400 1685 aa25.96■■□□□ 1.75
CLK3-225ENST00000569063 TAF1P21675 1872 aa25.96■■□□□ 1.75
CLK3-225ENST00000569063 CDHR2Q9BYE9 1310 aa25.96■■□□□ 1.75
CLK3-225ENST00000569063 FKBP5Q13451 457 aaPredicted RBP25.96■■□□□ 1.75
CLK3-225ENST00000569063 LARGE2Q8N3Y3 721 aa25.96■■□□□ 1.75
CLK3-225ENST00000569063 MPNDQ8N594 471 aa25.96■■□□□ 1.75
CLK3-225ENST00000569063 NEURL1BA8MQ27 555 aa25.95■■□□□ 1.74
CLK3-225ENST00000569063 CWF19L2Q2TBE0 894 aaKnown RBP25.95■■□□□ 1.74
CLK3-225ENST00000569063 JARID2Q92833 1246 aaPredicted RBP25.95■■□□□ 1.74
CLK3-225ENST00000569063 IQCA1LA6NCM1 817 aa25.94■■□□□ 1.74
CLK3-225ENST00000569063 GPC2Q8N158 579 aa25.94■■□□□ 1.74
CLK3-225ENST00000569063 PPIP5K2O43314 1243 aa25.93■■□□□ 1.74
CLK3-225ENST00000569063 APLP1P51693 650 aa25.93■■□□□ 1.74
CLK3-225ENST00000569063 RPS8P62241 208 aaKnown RBP25.93■■□□□ 1.74
CLK3-225ENST00000569063 CCDC152Q4G0S7 254 aa25.93■■□□□ 1.74
CLK3-225ENST00000569063 DNAAF4Q8WXU2 420 aa25.93■■□□□ 1.74
CLK3-225ENST00000569063 LRRC37AA6NMS7 1700 aa25.93■■□□□ 1.74
CLK3-225ENST00000569063 EIF6P56537 245 aaKnown RBP25.92■■□□□ 1.74
CLK3-225ENST00000569063 AOC3Q16853 763 aa25.92■■□□□ 1.74
CLK3-225ENST00000569063 NIM1KQ8IY84 436 aa25.92■■□□□ 1.74
CLK3-225ENST00000569063 COL4A1P02462 1669 aa25.91■■□□□ 1.74
CLK3-225ENST00000569063 H7C1W4 665 aa25.91■■□□□ 1.74
CLK3-225ENST00000569063 LINS1Q8NG48 757 aa25.91■■□□□ 1.74
CLK3-225ENST00000569063 SCN4AP35499 1836 aa25.91■■□□□ 1.74
CLK3-225ENST00000569063 CEP350Q5VT06 3117 aa25.9■■□□□ 1.74
CLK3-225ENST00000569063 E9PSI1 815 aa25.9■■□□□ 1.74
CLK3-225ENST00000569063 KIAA2012Q0VF49 1180 aa25.9■■□□□ 1.74
CLK3-225ENST00000569063 GCKRQ14397 625 aa25.9■■□□□ 1.74
CLK3-225ENST00000569063 SEC31BQ9NQW1 1179 aa25.9■■□□□ 1.74
CLK3-225ENST00000569063 TAF1DQ9H5J8 278 aaPredicted RBP25.89■■□□□ 1.74
CLK3-225ENST00000569063 DUOX1Q9NRD9 1551 aa25.88■■□□□ 1.73
CLK3-225ENST00000569063 CTSWP56202 376 aa25.88■■□□□ 1.73
CLK3-225ENST00000569063 HACL1Q9UJ83 578 aa25.88■■□□□ 1.73
CLK3-225ENST00000569063 ZNRF3Q9ULT6 936 aa25.88■■□□□ 1.73
CLK3-225ENST00000569063 NSFL1CQ9UNZ2 370 aaKnown RBP25.88■■□□□ 1.73
CLK3-225ENST00000569063 SLFN5Q08AF3 891 aa25.87■■□□□ 1.73
CLK3-225ENST00000569063 UBE3BQ7Z3V4 1068 aa25.87■■□□□ 1.73
CLK3-225ENST00000569063 TTLL11Q8NHH1 800 aa25.87■■□□□ 1.73
CLK3-225ENST00000569063 GPSM2P81274 684 aa25.86■■□□□ 1.73
CLK3-225ENST00000569063 GJA3Q9Y6H8 435 aa25.86■■□□□ 1.73
CLK3-225ENST00000569063 F6X3S4 739 aa25.85■■□□□ 1.73
CLK3-225ENST00000569063 CASP7P55210 303 aa25.85■■□□□ 1.73
CLK3-225ENST00000569063 CHADLQ6NUI6 762 aa25.85■■□□□ 1.73
CLK3-225ENST00000569063 CCDC85AQ96PX6 553 aaPredicted RBP25.85■■□□□ 1.73
CLK3-225ENST00000569063 PLA2G12BQ9BX93 195 aa25.85■■□□□ 1.73
CLK3-225ENST00000569063 POLLQ9UGP5 575 aa25.85■■□□□ 1.73
CLK3-225ENST00000569063 RTL9Q8NET4 1388 aa25.84■■□□□ 1.73
CLK3-225ENST00000569063 POTEIP0CG38 1075 aa25.84■■□□□ 1.73
CLK3-225ENST00000569063 POTEJP0CG39 1038 aa25.84■■□□□ 1.73
CLK3-225ENST00000569063 EPHX2P34913 555 aa25.84■■□□□ 1.73
CLK3-225ENST00000569063 BEND3Q5T5X7 828 aa25.84■■□□□ 1.73
CLK3-225ENST00000569063 PODXL2Q9NZ53 605 aa25.84■■□□□ 1.73
CLK3-225ENST00000569063 LTBP1Q14766 1721 aa25.83■■□□□ 1.73
CLK3-225ENST00000569063 CXCL9Q07325 125 aa25.83■■□□□ 1.73
CLK3-225ENST00000569063 WASHC4Q2M389 1173 aa25.83■■□□□ 1.73
CLK3-225ENST00000569063 PNMA8AQ86V59 439 aaPredicted RBP25.83■■□□□ 1.73
CLK3-225ENST00000569063 LDHDQ86WU2 507 aa25.83■■□□□ 1.73
CLK3-225ENST00000569063 ANKRD18AQ8IVF6 992 aa25.83■■□□□ 1.73
CLK3-225ENST00000569063 CDC5LQ99459 802 aaKnown RBP25.83■■□□□ 1.73
CLK3-225ENST00000569063 C6orf229H3BNL8 230 aa25.82■■□□□ 1.72
CLK3-225ENST00000569063 SCNN1DP51172 638 aa25.82■■□□□ 1.72
CLK3-225ENST00000569063 TRMT2AQ8IZ69 625 aaKnown RBP25.82■■□□□ 1.72
CLK3-225ENST00000569063 TBC1D16Q8TBP0 767 aa25.82■■□□□ 1.72
CLK3-225ENST00000569063 GREM2Q9H772 168 aa25.82■■□□□ 1.72
CLK3-225ENST00000569063 DNAJC5GQ8N7S2 189 aa25.81■■□□□ 1.72
CLK3-225ENST00000569063 CDCA7LQ96GN5 454 aa25.81■■□□□ 1.72
CLK3-225ENST00000569063 EYA3Q99504 573 aa25.81■■□□□ 1.72
CLK3-225ENST00000569063 MYH3P11055 1940 aa25.8■■□□□ 1.72
CLK3-225ENST00000569063 LMOD1P29536 600 aaPredicted RBP25.8■■□□□ 1.72
CLK3-225ENST00000569063 CSF1RP07333 972 aa25.79■■□□□ 1.72
CLK3-225ENST00000569063 EAPPQ56P03 285 aaPredicted RBP25.79■■□□□ 1.72
CLK3-225ENST00000569063 MRPL50Q8N5N7 158 aaKnown RBP25.79■■□□□ 1.72
CLK3-225ENST00000569063 ANKIB1Q9P2G1 1089 aa25.79■■□□□ 1.72
CLK3-225ENST00000569063 YDJCA8MPS7 323 aa25.78■■□□□ 1.72
CLK3-225ENST00000569063 TNIP1Q15025 636 aa25.78■■□□□ 1.72
CLK3-225ENST00000569063 DIEXFQ68CQ4 756 aaKnown RBP25.78■■□□□ 1.72
CLK3-225ENST00000569063 CIAPIN1Q6FI81 312 aa25.78■■□□□ 1.72
CLK3-225ENST00000569063 BSDC1Q9NW68 430 aaPredicted RBP25.78■■□□□ 1.72
CLK3-225ENST00000569063 ADAMTSL1Q8N6G6 1762 aa25.77■■□□□ 1.72
CLK3-225ENST00000569063 RIMBP2O15034 1052 aa25.77■■□□□ 1.72
CLK3-225ENST00000569063 EPS15P42566 896 aa25.77■■□□□ 1.72
CLK3-225ENST00000569063 GGA1Q9UJY5 639 aa25.77■■□□□ 1.72
CLK3-225ENST00000569063 ALDH1L1O75891 902 aa25.76■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms