RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 NR1I2O75469 434 aa12.23□□□□□ -0.45
USB1-212ENST00000566082 APOBRQ0VD83 1088 aa12.23□□□□□ -0.45
USB1-212ENST00000566082 CAGE1Q8TC20 777 aa12.23□□□□□ -0.45
USB1-212ENST00000566082 HYPKQ9NX55 129 aa12.23□□□□□ -0.45
USB1-212ENST00000566082 NCOA3Q9Y6Q9 1424 aa12.23□□□□□ -0.45
USB1-212ENST00000566082 A0A1B0GVL5 298 aa12.23□□□□□ -0.45
USB1-212ENST00000566082 DMTNQ08495 405 aa12.23□□□□□ -0.45
USB1-212ENST00000566082 CCDC150Q8NCX0 1101 aa12.23□□□□□ -0.45
USB1-212ENST00000566082 TPCN1Q9ULQ1 816 aa12.23□□□□□ -0.45
USB1-212ENST00000566082 LARGE1O95461 756 aa12.23□□□□□ -0.45
USB1-212ENST00000566082 CASQ1P31415 396 aa12.23□□□□□ -0.45
USB1-212ENST00000566082 ZC3H6P61129 1189 aaKnown RBP12.23□□□□□ -0.45
USB1-212ENST00000566082 SSH3Q8TE77 659 aa12.23□□□□□ -0.45
USB1-212ENST00000566082 NDUFB9Q9Y6M9 179 aa12.23□□□□□ -0.45
USB1-212ENST00000566082 AOX1Q06278 1338 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 RPS6KB1P23443 525 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 PIP4K2AP48426 406 aaPredicted RBP12.22□□□□□ -0.45
USB1-212ENST00000566082 UBASH3AP57075 661 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 CCDC129Q6ZRS4 1044 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 POGZQ7Z3K3 1410 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 FLT4P35916 1363 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 FAM135BQ49AJ0 1406 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 PTPDC1A2A3K4 754 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 MARCKSP29966 332 aaPredicted RBP12.22□□□□□ -0.45
USB1-212ENST00000566082 ZNF215Q9UL58 517 aaPredicted RBP12.22□□□□□ -0.45
USB1-212ENST00000566082 LAMC1P11047 1609 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 SSH2Q76I76 1423 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 ERLIN1O75477 346 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 AXDND1Q5T1B0 1012 aaPredicted RBP12.22□□□□□ -0.45
USB1-212ENST00000566082 KSR2Q6VAB6 950 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 CCDC144CPQ8IYA2 1237 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 CNNM3Q8NE01 707 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 SMARCE1Q969G3 411 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 EDC3Q96F86 508 aaKnown RBP12.22□□□□□ -0.45
USB1-212ENST00000566082 MAP3K4Q9Y6R4 1608 aa12.22□□□□□ -0.45
USB1-212ENST00000566082 CCDC57Q2TAC2 916 aa12.21□□□□□ -0.45
USB1-212ENST00000566082 KIF4BQ2VIQ3 1234 aa12.21□□□□□ -0.45
USB1-212ENST00000566082 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.21□□□□□ -0.45
USB1-212ENST00000566082 NUP133Q8WUM0 1156 aa12.21□□□□□ -0.45
USB1-212ENST00000566082 STAP2Q9UGK3 403 aa12.21□□□□□ -0.45
USB1-212ENST00000566082 EIF3JO75822 258 aaKnown RBP12.21□□□□□ -0.45
USB1-212ENST00000566082 IDH1O75874 414 aaKnown RBP12.21□□□□□ -0.45
USB1-212ENST00000566082 TATP17735 454 aaPredicted RBP12.21□□□□□ -0.45
USB1-212ENST00000566082 ERO1AQ96HE7 468 aa12.21□□□□□ -0.45
USB1-212ENST00000566082 LSG1Q9H089 658 aaKnown RBP12.21□□□□□ -0.45
USB1-212ENST00000566082 TBC1D2BQ9UPU7 963 aa12.21□□□□□ -0.45
USB1-212ENST00000566082 LMAN1P49257 510 aa12.21□□□□□ -0.46
USB1-212ENST00000566082 NCOA5Q9HCD5 579 aaKnown RBP12.21□□□□□ -0.46
USB1-212ENST00000566082 ALDH1L1O75891 902 aa12.2□□□□□ -0.46
USB1-212ENST00000566082 MCMDC2Q4G0Z9 681 aa12.2□□□□□ -0.46
USB1-212ENST00000566082 TRIM22Q8IYM9 498 aa12.2□□□□□ -0.46
USB1-212ENST00000566082 DACH1Q9UI36 760 aa12.2□□□□□ -0.46
USB1-212ENST00000566082 MRVI1Q9Y6F6 885 aa12.2□□□□□ -0.46
USB1-212ENST00000566082 A0A087WWV3 80 aa12.2□□□□□ -0.46
USB1-212ENST00000566082 KLF18A0A0U1RQI7 1052 aa12.2□□□□□ -0.46
USB1-212ENST00000566082 SLC39A6Q13433 755 aa12.2□□□□□ -0.46
USB1-212ENST00000566082 SART3Q15020 963 aaKnown RBP12.2□□□□□ -0.46
USB1-212ENST00000566082 BICC1Q9H694 974 aaKnown RBP12.2□□□□□ -0.46
USB1-212ENST00000566082 CDKL5O76039 1030 aa12.2□□□□□ -0.46
USB1-212ENST00000566082 SYKP43405 635 aa12.2□□□□□ -0.46
USB1-212ENST00000566082 CABP4P57796 275 aa12.2□□□□□ -0.46
USB1-212ENST00000566082 FAM193AP78312 1265 aa12.2□□□□□ -0.46
USB1-212ENST00000566082 LINS1Q8NG48 757 aa12.2□□□□□ -0.46
USB1-212ENST00000566082 RUFY1Q96T51 708 aa12.2□□□□□ -0.46
USB1-212ENST00000566082 MAP3K5Q99683 1374 aa12.2□□□□□ -0.46
USB1-212ENST00000566082 EPB41L2O43491 1005 aaKnown RBP12.19□□□□□ -0.46
USB1-212ENST00000566082 CEBPAP49715 358 aaPredicted RBP12.19□□□□□ -0.46
USB1-212ENST00000566082 ATP2B3Q16720 1220 aa12.19□□□□□ -0.46
USB1-212ENST00000566082 JAKMIP3Q5VZ66 844 aa12.19□□□□□ -0.46
USB1-212ENST00000566082 COPS6Q7L5N1 327 aa12.19□□□□□ -0.46
USB1-212ENST00000566082 CCDC12Q8WUD4 166 aaPredicted RBP12.19□□□□□ -0.46
USB1-212ENST00000566082 XAGE3Q8WTP9 111 aa12.19□□□□□ -0.46
USB1-212ENST00000566082 CACTINQ8WUQ7 758 aaKnown RBP12.19□□□□□ -0.46
USB1-212ENST00000566082 LRRC59Q96AG4 307 aaKnown RBP12.19□□□□□ -0.46
USB1-212ENST00000566082 TM6SF1Q9BZW5 370 aa12.19□□□□□ -0.46
USB1-212ENST00000566082 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.19□□□□□ -0.46
USB1-212ENST00000566082 ZSWIM6Q9HCJ5 1215 aa12.19□□□□□ -0.46
USB1-212ENST00000566082 CNNM1Q9NRU3 951 aa12.19□□□□□ -0.46
USB1-212ENST00000566082 IQSEC2Q5JU85 1478 aa12.19□□□□□ -0.46
USB1-212ENST00000566082 TRHP20396 242 aaPredicted RBP12.19□□□□□ -0.46
USB1-212ENST00000566082 NAP1L1P55209 391 aaKnown RBP12.19□□□□□ -0.46
USB1-212ENST00000566082 OTUD7BQ6GQQ9 843 aa12.19□□□□□ -0.46
USB1-212ENST00000566082 MICU3Q86XE3 530 aa12.19□□□□□ -0.46
USB1-212ENST00000566082 LGR6Q9HBX8 967 aa12.19□□□□□ -0.46
USB1-212ENST00000566082 CDC42BPBQ9Y5S2 1711 aa12.19□□□□□ -0.46
USB1-212ENST00000566082 ZNF213O14771 459 aa12.18□□□□□ -0.46
USB1-212ENST00000566082 XBP1P17861 261 aa12.18□□□□□ -0.46
USB1-212ENST00000566082 FAM160A1Q05DH4 1040 aa12.18□□□□□ -0.46
USB1-212ENST00000566082 GABPB1Q06547 395 aaPredicted RBP12.18□□□□□ -0.46
USB1-212ENST00000566082 MCM6Q14566 821 aa12.18□□□□□ -0.46
USB1-212ENST00000566082 AMOTQ4VCS5 1084 aa12.18□□□□□ -0.46
USB1-212ENST00000566082 MTMR7Q9Y216 660 aa12.18□□□□□ -0.46
USB1-212ENST00000566082 SPTLC2O15270 562 aa12.18□□□□□ -0.46
USB1-212ENST00000566082 KCNG4Q8TDN1 519 aa12.18□□□□□ -0.46
USB1-212ENST00000566082 UTP14AQ9BVJ6 771 aaKnown RBP12.18□□□□□ -0.46
USB1-212ENST00000566082 ARFGAP3Q9NP61 516 aa12.18□□□□□ -0.46
USB1-212ENST00000566082 ZCCHC11Q5TAX3 1644 aaKnown RBP12.18□□□□□ -0.46
USB1-212ENST00000566082 KIF1BO60333 1816 aa12.18□□□□□ -0.46
USB1-212ENST00000566082 A0A0D9SFI3 127 aa12.18□□□□□ -0.46
USB1-212ENST00000566082 KIF5CO60282 957 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 141.1 ms