RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 LMOD1P29536 600 aaPredicted RBP20.46■□□□□ 0.87
CLK3-211ENST00000563297 DPP8Q6V1X1 898 aaPredicted RBP20.46■□□□□ 0.87
CLK3-211ENST00000563297 FAM89AQ96GI7 184 aa20.46■□□□□ 0.87
CLK3-211ENST00000563297 LTBP1Q14766 1721 aa20.45■□□□□ 0.86
CLK3-211ENST00000563297 ZNRF3Q9ULT6 936 aa20.45■□□□□ 0.86
CLK3-211ENST00000563297 CXCL9Q07325 125 aa20.44■□□□□ 0.86
CLK3-211ENST00000563297 TRIM28Q13263 835 aaKnown RBP20.44■□□□□ 0.86
CLK3-211ENST00000563297 IFT57Q9NWB7 429 aa20.44■□□□□ 0.86
CLK3-211ENST00000563297 ELL2O00472 640 aaPredicted RBP20.43■□□□□ 0.86
CLK3-211ENST00000563297 VEGFBP49765 207 aa20.43■□□□□ 0.86
CLK3-211ENST00000563297 GNAI1P63096 354 aa20.43■□□□□ 0.86
CLK3-211ENST00000563297 KIAA2012Q0VF49 1180 aa20.43■□□□□ 0.86
CLK3-211ENST00000563297 SF3B3Q15393 1217 aaKnown RBP20.43■□□□□ 0.86
CLK3-211ENST00000563297 USP50Q70EL3 339 aaPredicted RBP20.43■□□□□ 0.86
CLK3-211ENST00000563297 TMC4Q7Z404 712 aa20.42■□□□□ 0.86
CLK3-211ENST00000563297 PHAXQ9H814 394 aaKnown RBP20.42■□□□□ 0.86
CLK3-211ENST00000563297 CALD1Q05682 793 aaKnown RBP20.41■□□□□ 0.86
CLK3-211ENST00000563297 RTL5Q5HYW3 569 aaPredicted RBP20.41■□□□□ 0.86
CLK3-211ENST00000563297 TNS4Q8IZW8 715 aa20.41■□□□□ 0.86
CLK3-211ENST00000563297 GPRC5DQ9NZD1 345 aa20.41■□□□□ 0.86
CLK3-211ENST00000563297 DDX60Q8IY21 1712 aaKnown RBP20.41■□□□□ 0.86
CLK3-211ENST00000563297 FMR1Q06787 632 aaKnown RBP eCLIP20.4■□□□□ 0.86
CLK3-211ENST00000563297 DEFB115Q30KQ5 88 aa20.4■□□□□ 0.86
CLK3-211ENST00000563297 CIAPIN1Q6FI81 312 aa20.4■□□□□ 0.86
CLK3-211ENST00000563297 RIC3Q7Z5B4 369 aa20.4■□□□□ 0.86
CLK3-211ENST00000563297 CELF1Q92879 486 aaKnown RBP20.4■□□□□ 0.86
CLK3-211ENST00000563297 RASSF10A6NK89 507 aa20.39■□□□□ 0.85
CLK3-211ENST00000563297 IRS4O14654 1257 aaPredicted RBP20.39■□□□□ 0.85
CLK3-211ENST00000563297 C8orf58Q8NAV2 365 aa20.39■□□□□ 0.85
CLK3-211ENST00000563297 ADARB2Q9NS39 739 aaKnown RBP20.39■□□□□ 0.85
CLK3-211ENST00000563297 RAD17O75943 681 aa20.38■□□□□ 0.85
CLK3-211ENST00000563297 GMPSP49915 693 aaPredicted RBP20.38■□□□□ 0.85
CLK3-211ENST00000563297 GOLGA2Q08379 1002 aa20.38■□□□□ 0.85
CLK3-211ENST00000563297 TNIP1Q15025 636 aa20.38■□□□□ 0.85
CLK3-211ENST00000563297 YDJCA8MPS7 323 aa20.37■□□□□ 0.85
CLK3-211ENST00000563297 FOXN1O15353 648 aa20.37■□□□□ 0.85
CLK3-211ENST00000563297 CCDC184Q52MB2 194 aa20.37■□□□□ 0.85
CLK3-211ENST00000563297 ZBTB38Q8NAP3 1195 aaPredicted RBP20.37■□□□□ 0.85
CLK3-211ENST00000563297 NSFL1CQ9UNZ2 370 aaKnown RBP20.37■□□□□ 0.85
CLK3-211ENST00000563297 TRAF5O00463 557 aa20.36■□□□□ 0.85
CLK3-211ENST00000563297 WASHC4Q2M389 1173 aa20.36■□□□□ 0.85
CLK3-211ENST00000563297 ABT1Q9ULW3 272 aaKnown RBP20.36■□□□□ 0.85
CLK3-211ENST00000563297 DUOX1Q9NRD9 1551 aa20.35■□□□□ 0.85
CLK3-211ENST00000563297 RPS8P62241 208 aaKnown RBP20.35■□□□□ 0.85
CLK3-211ENST00000563297 CST9Q5W186 159 aa20.35■□□□□ 0.85
CLK3-211ENST00000563297 MYD88Q99836 296 aa20.35■□□□□ 0.85
CLK3-211ENST00000563297 BCL2L13Q9BXK5 485 aa20.35■□□□□ 0.85
CLK3-211ENST00000563297 WBP1LQ9NX94 342 aa20.35■□□□□ 0.85
CLK3-211ENST00000563297 POLLQ9UGP5 575 aa20.35■□□□□ 0.85
CLK3-211ENST00000563297 PGAP2Q9UHJ9 254 aa20.35■□□□□ 0.85
CLK3-211ENST00000563297 LRRC37AA6NMS7 1700 aa20.35■□□□□ 0.85
CLK3-211ENST00000563297 HIRAP54198 1017 aaPredicted RBP20.34■□□□□ 0.85
CLK3-211ENST00000563297 GPSM2P81274 684 aa20.34■□□□□ 0.85
CLK3-211ENST00000563297 CCDC30Q5VVM6 783 aa20.34■□□□□ 0.85
CLK3-211ENST00000563297 TSPYL6Q8N831 410 aa20.34■□□□□ 0.85
CLK3-211ENST00000563297 CCDC191Q8NCU4 936 aa20.34■□□□□ 0.85
CLK3-211ENST00000563297 CNOT7Q9UIV1 285 aaKnown RBP20.34■□□□□ 0.85
CLK3-211ENST00000563297 COL4A1P02462 1669 aa20.34■□□□□ 0.85
CLK3-211ENST00000563297 TRPM7Q96QT4 1865 aa20.34■□□□□ 0.85
CLK3-211ENST00000563297 CDHR2Q9BYE9 1310 aa20.33■□□□□ 0.85
CLK3-211ENST00000563297 WDR33Q9C0J8 1336 aaKnown RBP20.33■□□□□ 0.85
CLK3-211ENST00000563297 C6orf229H3BNL8 230 aa20.33■□□□□ 0.85
CLK3-211ENST00000563297 CHMP4AQ9BY43 222 aa20.33■□□□□ 0.85
CLK3-211ENST00000563297 SEC31BQ9NQW1 1179 aa20.33■□□□□ 0.85
CLK3-211ENST00000563297 RIMBP2O15034 1052 aa20.32■□□□□ 0.84
CLK3-211ENST00000563297 PCCAP05165 728 aaPredicted RBP20.32■□□□□ 0.84
CLK3-211ENST00000563297 JARID2Q92833 1246 aaPredicted RBP20.32■□□□□ 0.84
CLK3-211ENST00000563297 METTL22Q9BUU2 404 aaPredicted RBP20.32■□□□□ 0.84
CLK3-211ENST00000563297 DBNDD1Q9H9R9 158 aa20.32■□□□□ 0.84
CLK3-211ENST00000563297 SHTN1A0MZ66 631 aa20.31■□□□□ 0.84
CLK3-211ENST00000563297 CAPN15O75808 1086 aa20.31■□□□□ 0.84
CLK3-211ENST00000563297 HSP90B1P14625 803 aaKnown RBP20.31■□□□□ 0.84
CLK3-211ENST00000563297 TBC1D16Q8TBP0 767 aa20.31■□□□□ 0.84
CLK3-211ENST00000563297 ZC3H15Q8WU90 426 aaKnown RBP20.31■□□□□ 0.84
CLK3-211ENST00000563297 PRDM10Q9NQV6 1147 aa20.31■□□□□ 0.84
CLK3-211ENST00000563297 CWC25Q9NXE8 425 aaPredicted RBP20.31■□□□□ 0.84
CLK3-211ENST00000563297 ZBTB12Q9Y330 459 aaPredicted RBP20.31■□□□□ 0.84
CLK3-211ENST00000563297 PSMD14O00487 310 aa20.3■□□□□ 0.84
CLK3-211ENST00000563297 PDE8AO60658 829 aa20.3■□□□□ 0.84
CLK3-211ENST00000563297 DDX58O95786 925 aaKnown RBP20.3■□□□□ 0.84
CLK3-211ENST00000563297 CTCFP49711 727 aaPredicted RBP20.3■□□□□ 0.84
CLK3-211ENST00000563297 CCDC27Q2M243 656 aa20.3■□□□□ 0.84
CLK3-211ENST00000563297 TRPM4Q8TD43 1214 aa20.3■□□□□ 0.84
CLK3-211ENST00000563297 DPF2Q92785 391 aa20.3■□□□□ 0.84
CLK3-211ENST00000563297 TSR2Q969E8 191 aaKnown RBP20.3■□□□□ 0.84
CLK3-211ENST00000563297 AIDAQ96BJ3 306 aa20.3■□□□□ 0.84
CLK3-211ENST00000563297 GLIS2Q9BZE0 524 aaPredicted RBP20.3■□□□□ 0.84
CLK3-211ENST00000563297 KCNQ5Q9NR82 932 aa20.3■□□□□ 0.84
CLK3-211ENST00000563297 H7C1D1 291 aa20.29■□□□□ 0.84
CLK3-211ENST00000563297 DOK7Q18PE1 504 aa20.29■□□□□ 0.84
CLK3-211ENST00000563297 WWC1Q8IX03 1113 aa20.29■□□□□ 0.84
CLK3-211ENST00000563297 GPR101Q96P66 508 aaPredicted RBP20.29■□□□□ 0.84
CLK3-211ENST00000563297 EYA3Q99504 573 aa20.29■□□□□ 0.84
CLK3-211ENST00000563297 PODXL2Q9NZ53 605 aa20.29■□□□□ 0.84
CLK3-211ENST00000563297 MAP3K2Q9Y2U5 619 aa20.29■□□□□ 0.84
CLK3-211ENST00000563297 TLL2Q9Y6L7 1015 aa20.29■□□□□ 0.84
CLK3-211ENST00000563297 MAP2K1Q02750 393 aaPredicted RBP20.28■□□□□ 0.84
CLK3-211ENST00000563297 CCDC152Q4G0S7 254 aa20.28■□□□□ 0.84
CLK3-211ENST00000563297 KSR2Q6VAB6 950 aa20.28■□□□□ 0.84
CLK3-211ENST00000563297 MICALL2Q8IY33 904 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms