RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 WDR33Q9C0J8 1336 aaKnown RBP16.92■□□□□ 0.3
SF3B3-202ENST00000562722 TRAF5O00463 557 aa16.91■□□□□ 0.3
SF3B3-202ENST00000562722 GMPSP49915 693 aaPredicted RBP16.91■□□□□ 0.3
SF3B3-202ENST00000562722 FMR1Q06787 632 aaKnown RBP eCLIP16.91■□□□□ 0.32e-6■■□□□ 11.4
SF3B3-202ENST00000562722 CXCL9Q07325 125 aa16.91■□□□□ 0.3
SF3B3-202ENST00000562722 RTFDC1Q9BY42 306 aaPredicted RBP16.91■□□□□ 0.3
SF3B3-202ENST00000562722 PRDM10Q9NQV6 1147 aa16.91■□□□□ 0.3
SF3B3-202ENST00000562722 WBP1LQ9NX94 342 aa16.91■□□□□ 0.3
SF3B3-202ENST00000562722 TRIM35Q9UPQ4 493 aa16.91■□□□□ 0.3
SF3B3-202ENST00000562722 ANKRD36CQ5JPF3 1778 aa16.91■□□□□ 0.3
SF3B3-202ENST00000562722 RAD17O75943 681 aa16.9■□□□□ 0.3
SF3B3-202ENST00000562722 MAP2K1Q02750 393 aaPredicted RBP16.9■□□□□ 0.3
SF3B3-202ENST00000562722 CIAPIN1Q6FI81 312 aa16.9■□□□□ 0.3
SF3B3-202ENST00000562722 PLBD2Q8NHP8 589 aa16.9■□□□□ 0.3
SF3B3-202ENST00000562722 ATP5J2-PTCD1G3V325 749 aa16.89■□□□□ 0.29
SF3B3-202ENST00000562722 ECE1P42892 770 aa16.89■□□□□ 0.29
SF3B3-202ENST00000562722 LBX1P52954 281 aa16.89■□□□□ 0.29
SF3B3-202ENST00000562722 KIAA2012Q0VF49 1180 aa16.89■□□□□ 0.29
SF3B3-202ENST00000562722 TNIP1Q15025 636 aa16.89■□□□□ 0.29
SF3B3-202ENST00000562722 ANKRD13DQ6ZTN6 518 aa16.89■□□□□ 0.29
SF3B3-202ENST00000562722 DBF4Q9UBU7 674 aaPredicted RBP16.89■□□□□ 0.29
SF3B3-202ENST00000562722 HOXB7P09629 217 aa16.88■□□□□ 0.29
SF3B3-202ENST00000562722 RTL5Q5HYW3 569 aaPredicted RBP16.88■□□□□ 0.29
SF3B3-202ENST00000562722 TMC4Q7Z404 712 aa16.88■□□□□ 0.29
SF3B3-202ENST00000562722 FAM89AQ96GI7 184 aa16.88■□□□□ 0.29
SF3B3-202ENST00000562722 CAPNS2Q96L46 248 aa16.88■□□□□ 0.29
SF3B3-202ENST00000562722 ADAMTS8Q9UP79 889 aa16.88■□□□□ 0.29
SF3B3-202ENST00000562722 LAMB2P55268 1798 aa16.87■□□□□ 0.29
SF3B3-202ENST00000562722 BEGAINQ9BUH8 593 aa16.87■□□□□ 0.29
SF3B3-202ENST00000562722 HYPKQ9NX55 129 aa16.87■□□□□ 0.29
SF3B3-202ENST00000562722 CELF2O95319 508 aaKnown RBP16.86■□□□□ 0.29
SF3B3-202ENST00000562722 DUSP27Q5VZP5 1158 aa16.86■□□□□ 0.29
SF3B3-202ENST00000562722 CYP4F22Q6NT55 531 aa16.86■□□□□ 0.29
SF3B3-202ENST00000562722 CFAP44Q96MT7 982 aa16.86■□□□□ 0.29
SF3B3-202ENST00000562722 ZNF408Q9H9D4 720 aa16.86■□□□□ 0.29
SF3B3-202ENST00000562722 NSFL1CQ9UNZ2 370 aaKnown RBP16.86■□□□□ 0.29
SF3B3-202ENST00000562722 CDHR2Q9BYE9 1310 aa16.86■□□□□ 0.29
SF3B3-202ENST00000562722 HSPA8P11142 646 aaKnown RBP16.85■□□□□ 0.29
SF3B3-202ENST00000562722 GOLGA2Q08379 1002 aa16.85■□□□□ 0.29
SF3B3-202ENST00000562722 WASHC4Q2M389 1173 aa16.85■□□□□ 0.29
SF3B3-202ENST00000562722 CST9Q5W186 159 aa16.85■□□□□ 0.29
SF3B3-202ENST00000562722 CELF1Q92879 486 aaKnown RBP16.85■□□□□ 0.29
SF3B3-202ENST00000562722 GPR101Q96P66 508 aaPredicted RBP16.85■□□□□ 0.29
SF3B3-202ENST00000562722 ISCA1Q9BUE6 129 aa16.85■□□□□ 0.29
SF3B3-202ENST00000562722 GLIS2Q9BZE0 524 aaPredicted RBP16.85■□□□□ 0.29
SF3B3-202ENST00000562722 MBIPQ9NS73 344 aa16.85■□□□□ 0.29
SF3B3-202ENST00000562722 C6orf229H3BNL8 230 aa16.84■□□□□ 0.29
SF3B3-202ENST00000562722 H7C1D1 291 aa16.84■□□□□ 0.29
SF3B3-202ENST00000562722 RIMBP2O15034 1052 aa16.84■□□□□ 0.29
SF3B3-202ENST00000562722 RIC3Q7Z5B4 369 aa16.84■□□□□ 0.29
SF3B3-202ENST00000562722 CNOT7Q9UIV1 285 aaKnown RBP16.84■□□□□ 0.29
SF3B3-202ENST00000562722 TLL2Q9Y6L7 1015 aa16.84■□□□□ 0.29
SF3B3-202ENST00000562722 YDJCA8MPS7 323 aa16.83■□□□□ 0.28
SF3B3-202ENST00000562722 IRS4O14654 1257 aaPredicted RBP16.83■□□□□ 0.28
SF3B3-202ENST00000562722 SF3B3Q15393 1217 aaKnown RBP16.83■□□□□ 0.28
SF3B3-202ENST00000562722 MICALL2Q8IY33 904 aa16.83■□□□□ 0.28
SF3B3-202ENST00000562722 TRPM4Q8TD43 1214 aa16.83■□□□□ 0.28
SF3B3-202ENST00000562722 DBNDD1Q9H9R9 158 aa16.83■□□□□ 0.28
SF3B3-202ENST00000562722 DUOX1Q9NRD9 1551 aa16.82■□□□□ 0.28
SF3B3-202ENST00000562722 ELL2O00472 640 aaPredicted RBP16.82■□□□□ 0.28
SF3B3-202ENST00000562722 GPSM2P81274 684 aa16.82■□□□□ 0.28
SF3B3-202ENST00000562722 CALD1Q05682 793 aaKnown RBP16.82■□□□□ 0.28
SF3B3-202ENST00000562722 ZC3H15Q8WU90 426 aaKnown RBP16.82■□□□□ 0.28
SF3B3-202ENST00000562722 EYA3Q99504 573 aa16.82■□□□□ 0.28
SF3B3-202ENST00000562722 ZBTB12Q9Y330 459 aaPredicted RBP16.82■□□□□ 0.28
SF3B3-202ENST00000562722 DDX60Q8IY21 1712 aaKnown RBP16.82■□□□□ 0.28
SF3B3-202ENST00000562722 SHTN1A0MZ66 631 aa16.81■□□□□ 0.28
SF3B3-202ENST00000562722 PSMD14O00487 310 aa16.81■□□□□ 0.28
SF3B3-202ENST00000562722 AOC2O75106 756 aa16.81■□□□□ 0.28
SF3B3-202ENST00000562722 HIRAP54198 1017 aaPredicted RBP16.81■□□□□ 0.28
SF3B3-202ENST00000562722 CDC37L1Q7L3B6 337 aa16.81■□□□□ 0.28
SF3B3-202ENST00000562722 TAF1P21675 1872 aa16.81■□□□□ 0.28
SF3B3-202ENST00000562722 TRPM7Q96QT4 1865 aa16.8■□□□□ 0.28
SF3B3-202ENST00000562722 LRRC37AA6NMS7 1700 aa16.8■□□□□ 0.28
SF3B3-202ENST00000562722 G3V3G9 751 aa16.8■□□□□ 0.28
SF3B3-202ENST00000562722 APAF1O14727 1248 aa16.8■□□□□ 0.28
SF3B3-202ENST00000562722 ECE2O60344 883 aa16.8■□□□□ 0.28
SF3B3-202ENST00000562722 HSP90B1P14625 803 aaKnown RBP16.8■□□□□ 0.28
SF3B3-202ENST00000562722 GNAI1P63096 354 aa16.8■□□□□ 0.28
SF3B3-202ENST00000562722 DOK7Q18PE1 504 aa16.8■□□□□ 0.28
SF3B3-202ENST00000562722 DCAF8Q5TAQ9 597 aa16.8■□□□□ 0.28
SF3B3-202ENST00000562722 SAPCD2Q86UD0 394 aa16.8■□□□□ 0.28
SF3B3-202ENST00000562722 MYD88Q99836 296 aa16.8■□□□□ 0.28
SF3B3-202ENST00000562722 PRKRIP1Q9H875 184 aaPredicted RBP16.8■□□□□ 0.28
SF3B3-202ENST00000562722 IFT57Q9NWB7 429 aa16.8■□□□□ 0.28
SF3B3-202ENST00000562722 POLLQ9UGP5 575 aa16.8■□□□□ 0.28
SF3B3-202ENST00000562722 RPS8P62241 208 aaKnown RBP16.79■□□□□ 0.28
SF3B3-202ENST00000562722 TRIM28Q13263 835 aaKnown RBP16.79■□□□□ 0.28
SF3B3-202ENST00000562722 TBC1D10BQ4KMP7 808 aaPredicted RBP16.79■□□□□ 0.28
SF3B3-202ENST00000562722 SAMD7Q7Z3H4 446 aa16.79■□□□□ 0.28
SF3B3-202ENST00000562722 USP48Q86UV5 1035 aa16.79■□□□□ 0.28
SF3B3-202ENST00000562722 ZBTB38Q8NAP3 1195 aaPredicted RBP16.79■□□□□ 0.28
SF3B3-202ENST00000562722 PHAXQ9H814 394 aaKnown RBP16.79■□□□□ 0.28
SF3B3-202ENST00000562722 ANKIB1Q9P2G1 1089 aa16.79■□□□□ 0.28
SF3B3-202ENST00000562722 PGAP2Q9UHJ9 254 aa16.79■□□□□ 0.28
SF3B3-202ENST00000562722 TSKSQ9UJT2 592 aa16.79■□□□□ 0.28
SF3B3-202ENST00000562722 THSD7BQ9C0I4 1608 aa16.78■□□□□ 0.28
SF3B3-202ENST00000562722 MAP2K2P36507 400 aa16.78■□□□□ 0.28
SF3B3-202ENST00000562722 RBM26Q5T8P6 1007 aaKnown RBP16.78■□□□□ 0.28
SF3B3-202ENST00000562722 TBC1D16Q8TBP0 767 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms