RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	C11orf16	Q9NQ32	467 aa		4.79	□□□□□ -1.64
SPG11-223	ENST00000560858	USP17L5	A8MUK1	530 aa		4.78	□□□□□ -1.64
SPG11-223	ENST00000560858	ZBTB42	B2RXF5	422 aa		4.78	□□□□□ -1.64
SPG11-223	ENST00000560858	ZBTB7B	O15156	539 aa	Predicted RBP	4.78	□□□□□ -1.64
SPG11-223	ENST00000560858	LARGE2	Q8N3Y3	721 aa		4.78	□□□□□ -1.64
SPG11-223	ENST00000560858	NGLY1	Q96IV0	654 aa		4.78	□□□□□ -1.64
SPG11-223	ENST00000560858	ATAD2	Q6PL18	1390 aa		4.78	□□□□□ -1.64
SPG11-223	ENST00000560858	PALM3	A6NDB9	673 aa	Predicted RBP	4.77	□□□□□ -1.65
SPG11-223	ENST00000560858	TGFBR3L	H3BV60	316 aa		4.77	□□□□□ -1.65
SPG11-223	ENST00000560858	EIF2AK2	P19525	551 aa	Known RBP	4.77	□□□□□ -1.65
SPG11-223	ENST00000560858	TARS	P26639	723 aa	Known RBP	4.77	□□□□□ -1.65
SPG11-223	ENST00000560858	GPLD1	P80108	840 aa		4.77	□□□□□ -1.65
SPG11-223	ENST00000560858	MLLT1	Q03111	559 aa	Predicted RBP	4.77	□□□□□ -1.65
SPG11-223	ENST00000560858	NFIA	Q12857	509 aa		4.77	□□□□□ -1.65
SPG11-223	ENST00000560858	KRT25	Q7Z3Z0	450 aa		4.77	□□□□□ -1.65
SPG11-223	ENST00000560858	WWC1	Q8IX03	1113 aa		4.77	□□□□□ -1.65
SPG11-223	ENST00000560858	IL22RA1	Q8N6P7	574 aa		4.77	□□□□□ -1.65
SPG11-223	ENST00000560858	CHMP7	Q8WUX9	453 aa	Predicted RBP	4.77	□□□□□ -1.65
SPG11-223	ENST00000560858	C2orf49	Q9BVC5	232 aa	Predicted RBP	4.77	□□□□□ -1.65
SPG11-223	ENST00000560858	RARA	P10276	462 aa		4.76	□□□□□ -1.65
SPG11-223	ENST00000560858	NRL	P54845	237 aa		4.76	□□□□□ -1.65
SPG11-223	ENST00000560858	PLAUR	Q03405	335 aa		4.76	□□□□□ -1.65
SPG11-223	ENST00000560858	RTN1	Q16799	776 aa		4.76	□□□□□ -1.65
SPG11-223	ENST00000560858		Q6ZS46	218 aa		4.76	□□□□□ -1.65
SPG11-223	ENST00000560858	HFE2	Q6ZVN8	426 aa		4.76	□□□□□ -1.65
SPG11-223	ENST00000560858	ZDHHC13	Q8IUH4	622 aa		4.76	□□□□□ -1.65
SPG11-223	ENST00000560858	TSEN2	Q8NCE0	465 aa	Known RBP	4.76	□□□□□ -1.65
SPG11-223	ENST00000560858	CEP41	Q9BYV8	373 aa		4.76	□□□□□ -1.65
SPG11-223	ENST00000560858	RBSN	Q9H1K0	784 aa		4.76	□□□□□ -1.65
SPG11-223	ENST00000560858	ALG2	Q9H553	416 aa		4.76	□□□□□ -1.65
SPG11-223	ENST00000560858	ZFAT	Q9P243	1243 aa		4.76	□□□□□ -1.65
SPG11-223	ENST00000560858	C21orf2	O43822	256 aa		4.75	□□□□□ -1.65
SPG11-223	ENST00000560858	SASH3	O75995	380 aa		4.75	□□□□□ -1.65
SPG11-223	ENST00000560858	INPP5B	P32019	993 aa		4.75	□□□□□ -1.65
SPG11-223	ENST00000560858	GDF6	Q6KF10	455 aa	Predicted RBP	4.75	□□□□□ -1.65
SPG11-223	ENST00000560858	DTX1	Q86Y01	620 aa		4.75	□□□□□ -1.65
SPG11-223	ENST00000560858	CACTIN-AS1	Q8N1I8	211 aa		4.75	□□□□□ -1.65
SPG11-223	ENST00000560858	SCG3	Q8WXD2	468 aa	Known RBP	4.75	□□□□□ -1.65
SPG11-223	ENST00000560858	UBL7	Q96S82	380 aa	Predicted RBP	4.75	□□□□□ -1.65
SPG11-223	ENST00000560858	MUC3B	Q9H195	1237 aa		4.75	□□□□□ -1.65
SPG11-223	ENST00000560858	DMGDH	Q9UI17	866 aa	Known RBP	4.75	□□□□□ -1.65
SPG11-223	ENST00000560858	ADAMTS4	O75173	837 aa		4.74	□□□□□ -1.65
SPG11-223	ENST00000560858	GHRH	P01286	108 aa		4.74	□□□□□ -1.65
SPG11-223	ENST00000560858	SPINK2	P20155	84 aa		4.74	□□□□□ -1.65
SPG11-223	ENST00000560858	CLDN10	P78369	228 aa		4.74	□□□□□ -1.65
SPG11-223	ENST00000560858	RNF43	Q68DV7	783 aa		4.74	□□□□□ -1.65
SPG11-223	ENST00000560858	PLEKHM2	Q8IWE5	1019 aa		4.74	□□□□□ -1.65
SPG11-223	ENST00000560858	AGGF1	Q8N302	714 aa	eCLIP	4.74	□□□□□ -1.65
SPG11-223	ENST00000560858	OGFOD1	Q8N543	542 aa		4.74	□□□□□ -1.65
SPG11-223	ENST00000560858	PLD4	Q96BZ4	506 aa		4.74	□□□□□ -1.65
SPG11-223	ENST00000560858	IFT43	Q96FT9	208 aa		4.74	□□□□□ -1.65
SPG11-223	ENST00000560858	KRTAP4-9	Q9BYQ8	210 aa		4.74	□□□□□ -1.65
SPG11-223	ENST00000560858	KIAA1024	Q9UPX6	916 aa		4.74	□□□□□ -1.65
SPG11-223	ENST00000560858	LOC102724428	A0A0B4J2F2	783 aa		4.73	□□□□□ -1.65
SPG11-223	ENST00000560858	IDH3A	P50213	366 aa		4.73	□□□□□ -1.65
SPG11-223	ENST00000560858	ARSD	P51689	593 aa		4.73	□□□□□ -1.65
SPG11-223	ENST00000560858	SIK1	P57059	783 aa		4.73	□□□□□ -1.65
SPG11-223	ENST00000560858	JAG1	P78504	1218 aa		4.73	□□□□□ -1.65
SPG11-223	ENST00000560858	SETDB1	Q15047	1291 aa		4.73	□□□□□ -1.65
SPG11-223	ENST00000560858	UVSSA	Q2YD98	709 aa		4.73	□□□□□ -1.65
SPG11-223	ENST00000560858	UTP4	Q969X6	686 aa	Known RBP	4.73	□□□□□ -1.65
SPG11-223	ENST00000560858	DBNDD2	Q9BQY9	259 aa		4.73	□□□□□ -1.65
SPG11-223	ENST00000560858	TLR7	Q9NYK1	1049 aa	Known RBP	4.73	□□□□□ -1.65
SPG11-223	ENST00000560858	MKRN1	Q9UHC7	482 aa	Known RBP	4.73	□□□□□ -1.65
SPG11-223	ENST00000560858	ADGRE2	Q9UHX3	823 aa		4.73	□□□□□ -1.65
SPG11-223	ENST00000560858	BCS1L	Q9Y276	419 aa		4.73	□□□□□ -1.65
SPG11-223	ENST00000560858	USP17L3	A6NCW0	530 aa		4.72	□□□□□ -1.65
SPG11-223	ENST00000560858	USP17L4	A6NCW7	530 aa		4.72	□□□□□ -1.65
SPG11-223	ENST00000560858	PSAP	P07602	524 aa		4.72	□□□□□ -1.65
SPG11-223	ENST00000560858	USP17L2	Q6R6M4	530 aa		4.72	□□□□□ -1.65
SPG11-223	ENST00000560858	USP17L1	Q7RTZ2	530 aa		4.72	□□□□□ -1.65
SPG11-223	ENST00000560858	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	4.72	□□□□□ -1.65
SPG11-223	ENST00000560858	TRIM42	Q8IWZ5	723 aa		4.72	□□□□□ -1.65
SPG11-223	ENST00000560858	SIX5	Q8N196	739 aa		4.72	□□□□□ -1.65
SPG11-223	ENST00000560858	PPME1	Q9Y570	386 aa		4.72	□□□□□ -1.65
SPG11-223	ENST00000560858	HMX2	A2RU54	273 aa		4.71	□□□□□ -1.66
SPG11-223	ENST00000560858	PRR19	A6NJB7	356 aa		4.71	□□□□□ -1.66
SPG11-223	ENST00000560858		J3QW42	95 aa		4.71	□□□□□ -1.66
SPG11-223	ENST00000560858	OGFOD2	Q6N063	350 aa		4.71	□□□□□ -1.66
SPG11-223	ENST00000560858	CLEC10A	Q8IUN9	316 aa		4.71	□□□□□ -1.66
SPG11-223	ENST00000560858	ARMC10	Q8N2F6	343 aa		4.71	□□□□□ -1.66
SPG11-223	ENST00000560858	ASIC4	Q96FT7	647 aa		4.71	□□□□□ -1.66
SPG11-223	ENST00000560858	ZNF594	Q96JF6	807 aa	Predicted RBP	4.71	□□□□□ -1.66
SPG11-223	ENST00000560858	HINFP	Q9BQA5	517 aa		4.71	□□□□□ -1.66
SPG11-223	ENST00000560858	C7orf69	Q9H7B7	122 aa		4.71	□□□□□ -1.66
SPG11-223	ENST00000560858	MICAL2	O94851	1124 aa		4.7	□□□□□ -1.66
SPG11-223	ENST00000560858	GRN	P28799	593 aa	Known RBP	4.7	□□□□□ -1.66
SPG11-223	ENST00000560858	CD68	P34810	354 aa	Predicted RBP	4.7	□□□□□ -1.66
SPG11-223	ENST00000560858	SEC13	P55735	322 aa		4.7	□□□□□ -1.66
SPG11-223	ENST00000560858	BCAN	Q96GW7	911 aa		4.7	□□□□□ -1.66
SPG11-223	ENST00000560858	SART1	O43290	800 aa	Known RBP	4.69	□□□□□ -1.66
SPG11-223	ENST00000560858	XYLB	O75191	536 aa		4.69	□□□□□ -1.66
SPG11-223	ENST00000560858	EGFR	P00533	1210 aa		4.69	□□□□□ -1.66
SPG11-223	ENST00000560858	C8A	P07357	584 aa		4.69	□□□□□ -1.66
SPG11-223	ENST00000560858	ACAD11	Q709F0	780 aa		4.69	□□□□□ -1.66
SPG11-223	ENST00000560858	GIMAP7	Q8NHV1	300 aa		4.69	□□□□□ -1.66
SPG11-223	ENST00000560858	SHKBP1	Q8TBC3	707 aa		4.69	□□□□□ -1.66
SPG11-223	ENST00000560858	MYRFL	Q96LU7	910 aa		4.69	□□□□□ -1.66
SPG11-223	ENST00000560858	FAM83C	Q9BQN1	747 aa		4.69	□□□□□ -1.66
SPG11-223	ENST00000560858	KLK14	Q9P0G3	267 aa		4.69	□□□□□ -1.66

Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms