RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 ZNRF3Q9ULT6 936 aa15.84■□□□□ 0.13
SPG11-219ENST00000559822 DDX60Q8IY21 1712 aaKnown RBP15.84■□□□□ 0.13
SPG11-219ENST00000559822 ELL2O00472 640 aaPredicted RBP15.83■□□□□ 0.12
SPG11-219ENST00000559822 KIAA2012Q0VF49 1180 aa15.83■□□□□ 0.12
SPG11-219ENST00000559822 CCDC30Q5VVM6 783 aa15.83■□□□□ 0.12
SPG11-219ENST00000559822 TMEM88BA6NKF7 163 aa15.82■□□□□ 0.12
SPG11-219ENST00000559822 ITGBL1O95965 494 aaPredicted RBP15.82■□□□□ 0.12
SPG11-219ENST00000559822 SCNN1DP51172 638 aa15.82■□□□□ 0.12
SPG11-219ENST00000559822 CCDC27Q2M243 656 aa15.82■□□□□ 0.12
SPG11-219ENST00000559822 USP50Q70EL3 339 aaPredicted RBP15.82■□□□□ 0.12
SPG11-219ENST00000559822 CNTROBQ8N137 903 aa15.82■□□□□ 0.12
SPG11-219ENST00000559822 LRRC37AA6NMS7 1700 aa15.81■□□□□ 0.12
SPG11-219ENST00000559822 IRS4O14654 1257 aaPredicted RBP15.81■□□□□ 0.12
SPG11-219ENST00000559822 CNTNAP1P78357 1384 aa15.81■□□□□ 0.12
SPG11-219ENST00000559822 MAP1SQ66K74 1059 aaPredicted RBP15.81■□□□□ 0.12
SPG11-219ENST00000559822 SLC51AQ86UW1 340 aa15.81■□□□□ 0.12
SPG11-219ENST00000559822 ZBTB38Q8NAP3 1195 aaPredicted RBP15.81■□□□□ 0.12
SPG11-219ENST00000559822 C8orf58Q8NAV2 365 aa15.81■□□□□ 0.12
SPG11-219ENST00000559822 CCDC191Q8NCU4 936 aa15.81■□□□□ 0.12
SPG11-219ENST00000559822 CDHR2Q9BYE9 1310 aa15.81■□□□□ 0.12
SPG11-219ENST00000559822 PHAXQ9H814 394 aaKnown RBP15.81■□□□□ 0.12
SPG11-219ENST00000559822 MKRN1Q9UHC7 482 aaKnown RBP15.81■□□□□ 0.12
SPG11-219ENST00000559822 HSPA1AP0DMV8 641 aaKnown RBP15.8■□□□□ 0.12
SPG11-219ENST00000559822 HSPA1BP0DMV9 641 aaKnown RBP15.8■□□□□ 0.12
SPG11-219ENST00000559822 CXCL9Q07325 125 aa15.8■□□□□ 0.12
SPG11-219ENST00000559822 TNIP1Q15025 636 aa15.8■□□□□ 0.12
SPG11-219ENST00000559822 NCBP3Q53F19 620 aaKnown RBP15.8■□□□□ 0.12
SPG11-219ENST00000559822 CIAPIN1Q6FI81 312 aa15.8■□□□□ 0.12
SPG11-219ENST00000559822 ZNF428Q96B54 188 aa15.8■□□□□ 0.12
SPG11-219ENST00000559822 MYD88Q99836 296 aa15.8■□□□□ 0.12
SPG11-219ENST00000559822 STK31Q9BXU1 1019 aa15.8■□□□□ 0.12
SPG11-219ENST00000559822 LTBP1Q14766 1721 aa15.8■□□□□ 0.12
SPG11-219ENST00000559822 ANP32CO43423 234 aa15.79■□□□□ 0.12
SPG11-219ENST00000559822 EPS15P42566 896 aa15.79■□□□□ 0.12
SPG11-219ENST00000559822 RTL5Q5HYW3 569 aaPredicted RBP15.79■□□□□ 0.12
SPG11-219ENST00000559822 ADARB2Q9NS39 739 aaKnown RBP15.79■□□□□ 0.12
SPG11-219ENST00000559822 CWC25Q9NXE8 425 aaPredicted RBP15.79■□□□□ 0.12
SPG11-219ENST00000559822 GPRC5DQ9NZD1 345 aa15.79■□□□□ 0.12
SPG11-219ENST00000559822 NSFL1CQ9UNZ2 370 aaKnown RBP15.79■□□□□ 0.12
SPG11-219ENST00000559822 IL16Q14005 1332 aa15.78■□□□□ 0.12
SPG11-219ENST00000559822 PCCAP05165 728 aaPredicted RBP15.78■□□□□ 0.12
SPG11-219ENST00000559822 WASHC4Q2M389 1173 aa15.78■□□□□ 0.12
SPG11-219ENST00000559822 CELF1Q92879 486 aaKnown RBP15.78■□□□□ 0.12
SPG11-219ENST00000559822 EYA3Q99504 573 aa15.78■□□□□ 0.12
SPG11-219ENST00000559822 METTL22Q9BUU2 404 aaPredicted RBP15.78■□□□□ 0.12
SPG11-219ENST00000559822 BCL2L13Q9BXK5 485 aa15.78■□□□□ 0.12
SPG11-219ENST00000559822 MRS2Q9HD23 443 aa15.78■□□□□ 0.12
SPG11-219ENST00000559822 TAF1P21675 1872 aa15.78■□□□□ 0.12
SPG11-219ENST00000559822 GMPSP49915 693 aaPredicted RBP15.77■□□□□ 0.12
SPG11-219ENST00000559822 RPS8P62241 208 aaKnown RBP15.77■□□□□ 0.12
SPG11-219ENST00000559822 CCDC152Q4G0S7 254 aa15.77■□□□□ 0.12
SPG11-219ENST00000559822 CCDC184Q52MB2 194 aa15.77■□□□□ 0.12
SPG11-219ENST00000559822 WWC1Q8IX03 1113 aa15.77■□□□□ 0.12
SPG11-219ENST00000559822 DUOX1Q9NRD9 1551 aa15.77■□□□□ 0.11
SPG11-219ENST00000559822 ZNF316A6NFI3 1004 aaPredicted RBP15.76■□□□□ 0.11
SPG11-219ENST00000559822 C6orf229H3BNL8 230 aa15.76■□□□□ 0.11
SPG11-219ENST00000559822 PDE8AO60658 829 aa15.76■□□□□ 0.11
SPG11-219ENST00000559822 NEXNQ0ZGT2 675 aa15.76■□□□□ 0.11
SPG11-219ENST00000559822 TSR2Q969E8 191 aaKnown RBP15.76■□□□□ 0.11
SPG11-219ENST00000559822 MAP3K2Q9Y2U5 619 aa15.76■□□□□ 0.11
SPG11-219ENST00000559822 RASSF10A6NK89 507 aa15.75■□□□□ 0.11
SPG11-219ENST00000559822 RAD17O75943 681 aa15.75■□□□□ 0.11
SPG11-219ENST00000559822 TWISTNBQ3B726 338 aaPredicted RBP15.75■□□□□ 0.11
SPG11-219ENST00000559822 KSR2Q6VAB6 950 aa15.75■□□□□ 0.11
SPG11-219ENST00000559822 TSPYL6Q8N831 410 aa15.75■□□□□ 0.11
SPG11-219ENST00000559822 ABT1Q9ULW3 272 aaKnown RBP15.75■□□□□ 0.11
SPG11-219ENST00000559822 H7C1D1 291 aa15.74■□□□□ 0.11
SPG11-219ENST00000559822 GPSM2P81274 684 aa15.74■□□□□ 0.11
SPG11-219ENST00000559822 DEFB115Q30KQ5 88 aa15.74■□□□□ 0.11
SPG11-219ENST00000559822 COL13A1Q5TAT6 717 aaPredicted RBP15.74■□□□□ 0.11
SPG11-219ENST00000559822 PI4KAP2A4QPH2 592 aa15.73■□□□□ 0.11
SPG11-219ENST00000559822 VEGFBP49765 207 aa15.73■□□□□ 0.11
SPG11-219ENST00000559822 PI4KAP1Q8N8J0 262 aa15.73■□□□□ 0.11
SPG11-219ENST00000559822 ZC3H15Q8WU90 426 aaKnown RBP15.73■□□□□ 0.11
SPG11-219ENST00000559822 AIDAQ96BJ3 306 aa15.73■□□□□ 0.11
SPG11-219ENST00000559822 PODXL2Q9NZ53 605 aa15.73■□□□□ 0.11
SPG11-219ENST00000559822 YDJCA8MPS7 323 aa15.72■□□□□ 0.11
SPG11-219ENST00000559822 RIMBP2O15034 1052 aa15.72■□□□□ 0.11
SPG11-219ENST00000559822 ANKRD18AQ8IVF6 992 aa15.72■□□□□ 0.11
SPG11-219ENST00000559822 TNS4Q8IZW8 715 aa15.72■□□□□ 0.11
SPG11-219ENST00000559822 TBC1D16Q8TBP0 767 aa15.72■□□□□ 0.11
SPG11-219ENST00000559822 DPF2Q92785 391 aa15.72■□□□□ 0.11
SPG11-219ENST00000559822 CDC5LQ99459 802 aaKnown RBP15.72■□□□□ 0.11
SPG11-219ENST00000559822 ZC3H12CQ9C0D7 883 aaKnown RBP15.72■□□□□ 0.11
SPG11-219ENST00000559822 DBNDD1Q9H9R9 158 aa15.72■□□□□ 0.11
SPG11-219ENST00000559822 ANKIB1Q9P2G1 1089 aa15.72■□□□□ 0.11
SPG11-219ENST00000559822 POLLQ9UGP5 575 aa15.72■□□□□ 0.11
SPG11-219ENST00000559822 CNOT7Q9UIV1 285 aaKnown RBP15.72■□□□□ 0.11
SPG11-219ENST00000559822 PCNTO95613 3336 aa15.71■□□□□ 0.11
SPG11-219ENST00000559822 G3V3G9 751 aa15.71■□□□□ 0.11
SPG11-219ENST00000559822 ECE2O60344 883 aa15.71■□□□□ 0.11
SPG11-219ENST00000559822 RPS12P25398 132 aaKnown RBP15.71■□□□□ 0.11
SPG11-219ENST00000559822 ECE1P42892 770 aa15.71■□□□□ 0.11
SPG11-219ENST00000559822 DCAF8Q5TAQ9 597 aa15.71■□□□□ 0.11
SPG11-219ENST00000559822 WDR63Q8IWG1 891 aa15.71■□□□□ 0.11
SPG11-219ENST00000559822 SEC31BQ9NQW1 1179 aa15.71■□□□□ 0.11
SPG11-219ENST00000559822 GGA1Q9UJY5 639 aa15.71■□□□□ 0.11
SPG11-219ENST00000559822 TRPM7Q96QT4 1865 aa15.71■□□□□ 0.11
SPG11-219ENST00000559822 PSMD14O00487 310 aa15.7■□□□□ 0.1
SPG11-219ENST00000559822 UFL1O94874 794 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms