RNA–Protein interactions for RNA: ENST00000559397.5

TPM1-219, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 1,655 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-219ENST00000559397 ANKRD44Q8N8A2 993 aa20.63■□□□□ 0.89
TPM1-219ENST00000559397 C10orf71Q711Q0 1435 aa20.62■□□□□ 0.89
TPM1-219ENST00000559397 CSF1RP07333 972 aa20.62■□□□□ 0.89
TPM1-219ENST00000559397 RABL6Q3YEC7 729 aaPredicted RBP20.62■□□□□ 0.89
TPM1-219ENST00000559397 BRIP1Q9BX63 1249 aa20.62■□□□□ 0.89
TPM1-219ENST00000559397 KIF13BQ9NQT8 1826 aa20.62■□□□□ 0.89
TPM1-219ENST00000559397 KLRG2A4D1S0 409 aaPredicted RBP20.61■□□□□ 0.89
TPM1-219ENST00000559397 CTSWP56202 376 aa20.61■□□□□ 0.89
TPM1-219ENST00000559397 NLRP3Q96P20 1036 aa20.61■□□□□ 0.89
TPM1-219ENST00000559397 SF3B3Q15393 1217 aaKnown RBP20.61■□□□□ 0.89
TPM1-219ENST00000559397 SIRT2Q8IXJ6 389 aa20.61■□□□□ 0.89
TPM1-219ENST00000559397 TTLL11Q8NHH1 800 aa20.61■□□□□ 0.89
TPM1-219ENST00000559397 CEP85Q6P2H3 762 aa20.59■□□□□ 0.89
TPM1-219ENST00000559397 LMBR1LQ6UX01 489 aa20.59■□□□□ 0.89
TPM1-219ENST00000559397 PDZRN3Q9UPQ7 1066 aa20.59■□□□□ 0.89
TPM1-219ENST00000559397 MTX1Q13505 466 aa20.58■□□□□ 0.89
TPM1-219ENST00000559397 CRY2Q49AN0 593 aa20.58■□□□□ 0.89
TPM1-219ENST00000559397 PDE6BP35913 854 aa20.58■□□□□ 0.88
TPM1-219ENST00000559397 RPAP2Q8IXW5 612 aaPredicted RBP20.58■□□□□ 0.88
TPM1-219ENST00000559397 RTL9Q8NET4 1388 aa20.57■□□□□ 0.88
TPM1-219ENST00000559397 ATP8B2P98198 1209 aa20.57■□□□□ 0.88
TPM1-219ENST00000559397 CCDC85AQ96PX6 553 aaPredicted RBP20.57■□□□□ 0.88
TPM1-219ENST00000559397 COL11A2P13942 1736 aaPredicted RBP20.56■□□□□ 0.88
TPM1-219ENST00000559397 CCDC152Q4G0S7 254 aa20.56■□□□□ 0.88
TPM1-219ENST00000559397 GREM2Q9H772 168 aa20.56■□□□□ 0.88
TPM1-219ENST00000559397 PNMA6EA0A0J9YXQ4 647 aa20.55■□□□□ 0.88
TPM1-219ENST00000559397 FAM161AQ3B820 660 aa20.55■□□□□ 0.88
TPM1-219ENST00000559397 KIAA1551Q9HCM1 1747 aa20.55■□□□□ 0.88
TPM1-219ENST00000559397 GCC1Q96CN9 775 aa20.54■□□□□ 0.88
TPM1-219ENST00000559397 SRGAP3O43295 1099 aa20.54■□□□□ 0.88
TPM1-219ENST00000559397 SRGNP10124 158 aa20.54■□□□□ 0.88
TPM1-219ENST00000559397 RFX5P48382 616 aaPredicted RBP20.54■□□□□ 0.88
TPM1-219ENST00000559397 POLA2Q14181 598 aa20.54■□□□□ 0.88
TPM1-219ENST00000559397 CHMP3Q9Y3E7 222 aa20.54■□□□□ 0.88
TPM1-219ENST00000559397 CD2APQ9Y5K6 639 aa20.54■□□□□ 0.88
TPM1-219ENST00000559397 SRCAPQ6ZRS2 3230 aa20.53■□□□□ 0.88
TPM1-219ENST00000559397 ITGA6P23229 1130 aa20.53■□□□□ 0.88
TPM1-219ENST00000559397 HOXA10P31260 410 aaPredicted RBP20.53■□□□□ 0.88
TPM1-219ENST00000559397 RGS3P49796 1198 aa20.53■□□□□ 0.88
TPM1-219ENST00000559397 C2CD5Q86YS7 1000 aa20.53■□□□□ 0.88
TPM1-219ENST00000559397 SSH3Q8TE77 659 aa20.53■□□□□ 0.88
TPM1-219ENST00000559397 SEC31BQ9NQW1 1179 aa20.53■□□□□ 0.88
TPM1-219ENST00000559397 COL4A1P02462 1669 aa20.53■□□□□ 0.88
TPM1-219ENST00000559397 TAF1P21675 1872 aa20.53■□□□□ 0.88
TPM1-219ENST00000559397 NUCB1Q02818 461 aa20.52■□□□□ 0.88
TPM1-219ENST00000559397 RBM19Q9Y4C8 960 aaKnown RBP20.52■□□□□ 0.88
TPM1-219ENST00000559397 DLEC1Q9Y238 1755 aa20.52■□□□□ 0.88
TPM1-219ENST00000559397 H0YIN7 160 aa20.51■□□□□ 0.87
TPM1-219ENST00000559397 NPR1P16066 1061 aa20.51■□□□□ 0.87
TPM1-219ENST00000559397 CHRNA5P30532 468 aa20.51■□□□□ 0.87
TPM1-219ENST00000559397 TGFB2P61812 414 aa20.51■□□□□ 0.87
TPM1-219ENST00000559397 IFIT5Q13325 482 aaKnown RBP20.51■□□□□ 0.87
TPM1-219ENST00000559397 CCDC57Q2TAC2 916 aa20.51■□□□□ 0.87
TPM1-219ENST00000559397 RPGRQ92834 1020 aaKnown RBP20.51■□□□□ 0.87
TPM1-219ENST00000559397 DCTPP1Q9H773 170 aa20.51■□□□□ 0.87
TPM1-219ENST00000559397 ANKRD18BA2A2Z9 1011 aa20.51■□□□□ 0.87
TPM1-219ENST00000559397 MASTLQ96GX5 879 aa20.51■□□□□ 0.87
TPM1-219ENST00000559397 LRP5O75197 1615 aa20.5■□□□□ 0.87
TPM1-219ENST00000559397 PTPN12Q05209 780 aaKnown RBP20.5■□□□□ 0.87
TPM1-219ENST00000559397 DDX46Q7L014 1031 aaKnown RBP20.5■□□□□ 0.87
TPM1-219ENST00000559397 RBM17Q96I25 401 aaKnown RBP20.5■□□□□ 0.87
TPM1-219ENST00000559397 DPEP1P16444 411 aa20.49■□□□□ 0.87
TPM1-219ENST00000559397 KCNA3P22001 575 aa20.49■□□□□ 0.87
TPM1-219ENST00000559397 PDE4AP27815 886 aa20.49■□□□□ 0.87
TPM1-219ENST00000559397 STYK1Q6J9G0 422 aa20.49■□□□□ 0.87
TPM1-219ENST00000559397 KLHDC4Q8TBB5 520 aa20.49■□□□□ 0.87
TPM1-219ENST00000559397 CELF1Q92879 486 aaKnown RBP20.49■□□□□ 0.87
TPM1-219ENST00000559397 ZNF594Q96JF6 807 aaPredicted RBP20.49■□□□□ 0.87
TPM1-219ENST00000559397 CRAMP1Q96RY5 1269 aa20.49■□□□□ 0.87
TPM1-219ENST00000559397 COPRSQ9NQ92 184 aa20.49■□□□□ 0.87
TPM1-219ENST00000559397 PPP1R1BQ9UD71 204 aaPredicted RBP20.49■□□□□ 0.87
TPM1-219ENST00000559397 A0A0G2JLW4 131 aa20.48■□□□□ 0.87
TPM1-219ENST00000559397 GRAPQ13588 217 aa20.48■□□□□ 0.87
TPM1-219ENST00000559397 GRAPLQ8TC17 118 aaPredicted RBP20.48■□□□□ 0.87
TPM1-219ENST00000559397 BACH2Q9BYV9 841 aa20.48■□□□□ 0.87
TPM1-219ENST00000559397 HMMRO75330 724 aa20.48■□□□□ 0.87
TPM1-219ENST00000559397 KLHL34Q8N239 644 aa20.48■□□□□ 0.87
TPM1-219ENST00000559397 CDC5LQ99459 802 aaKnown RBP20.48■□□□□ 0.87
TPM1-219ENST00000559397 PA2G4Q9UQ80 394 aaKnown RBP20.48■□□□□ 0.87
TPM1-219ENST00000559397 CHD1LQ86WJ1 897 aa20.47■□□□□ 0.87
TPM1-219ENST00000559397 ZNF622Q969S3 477 aaKnown RBP eCLIP20.47■□□□□ 0.876e-7■■□□□ 13.8
TPM1-219ENST00000559397 FHDC1Q9C0D6 1143 aaPredicted RBP20.47■□□□□ 0.87
TPM1-219ENST00000559397 SPEF2Q9C093 1822 aa20.46■□□□□ 0.87
TPM1-219ENST00000559397 BRCA1P38398 1863 aaKnown RBP20.46■□□□□ 0.87
TPM1-219ENST00000559397 RPS8P62241 208 aaKnown RBP20.46■□□□□ 0.87
TPM1-219ENST00000559397 NLGN2Q8NFZ4 835 aa20.46■□□□□ 0.87
TPM1-219ENST00000559397 ALDH1B1P30837 517 aa20.45■□□□□ 0.86
TPM1-219ENST00000559397 ANKRD18AQ8IVF6 992 aa20.45■□□□□ 0.86
TPM1-219ENST00000559397 NOP58Q9Y2X3 529 aaKnown RBP20.45■□□□□ 0.86
TPM1-219ENST00000559397 CACNA1SQ13698 1873 aa20.45■□□□□ 0.86
TPM1-219ENST00000559397 TAF7LQ5H9L4 462 aa20.45■□□□□ 0.86
TPM1-219ENST00000559397 BBOX1O75936 387 aa20.44■□□□□ 0.86
TPM1-219ENST00000559397 IGHMBP2P38935 993 aaKnown RBP20.44■□□□□ 0.86
TPM1-219ENST00000559397 ANKRD45Q5TZF3 282 aa20.44■□□□□ 0.86
TPM1-219ENST00000559397 CNKSR1Q969H4 720 aa20.44■□□□□ 0.86
TPM1-219ENST00000559397 PUS3Q9BZE2 481 aaKnown RBP20.44■□□□□ 0.86
TPM1-219ENST00000559397 SLX4Q8IY92 1834 aa20.44■□□□□ 0.86
TPM1-219ENST00000559397 GOLGB1Q14789 3259 aaKnown RBP20.44■□□□□ 0.86
TPM1-219ENST00000559397 LRRC24Q50LG9 513 aa20.43■□□□□ 0.86
TPM1-219ENST00000559397 MPHOSPH8Q99549 860 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms