RNA–Protein interactions for RNA: ENST00000556162.5

SNX6-206, Transcript of sorting nexin 6, humanhuman

TSL 2

Gene SNX6, Length 1,855 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-206ENST00000556162 SUCLG2Q96I99 432 aa17.78■□□□□ 0.44
SNX6-206ENST00000556162 CRAMP1Q96RY5 1269 aa17.78■□□□□ 0.44
SNX6-206ENST00000556162 MEIS3Q99687 375 aa17.78■□□□□ 0.44
SNX6-206ENST00000556162 TNRC6CQ9HCJ0 1690 aaKnown RBP17.78■□□□□ 0.44
SNX6-206ENST00000556162 N4BP2Q86UW6 1770 aaPredicted RBP17.78■□□□□ 0.44
SNX6-206ENST00000556162 FOXO4P98177 505 aa17.78■□□□□ 0.44
SNX6-206ENST00000556162 PELP1Q8IZL8 1130 aaKnown RBP17.78■□□□□ 0.44
SNX6-206ENST00000556162 CCDC85AQ96PX6 553 aaPredicted RBP17.78■□□□□ 0.44
SNX6-206ENST00000556162 BCS1LQ9Y276 419 aa17.78■□□□□ 0.44
SNX6-206ENST00000556162 CSF1RP07333 972 aa17.77■□□□□ 0.43
SNX6-206ENST00000556162 C20orf194Q5TEA3 1177 aa17.77■□□□□ 0.43
SNX6-206ENST00000556162 COG6Q9Y2V7 657 aa17.77■□□□□ 0.43
SNX6-206ENST00000556162 DDX60Q8IY21 1712 aaKnown RBP17.77■□□□□ 0.43
SNX6-206ENST00000556162 KIAA1551Q9HCM1 1747 aa17.76■□□□□ 0.43
SNX6-206ENST00000556162 MVPQ14764 893 aaKnown RBP17.76■□□□□ 0.43
SNX6-206ENST00000556162 EPHA10Q5JZY3 1008 aa17.76■□□□□ 0.43
SNX6-206ENST00000556162 KAZALD1Q96I82 304 aa17.76■□□□□ 0.43
SNX6-206ENST00000556162 SUPT16HQ9Y5B9 1047 aaKnown RBP17.76■□□□□ 0.43
SNX6-206ENST00000556162 GPR162Q16538 588 aa17.75■□□□□ 0.43
SNX6-206ENST00000556162 LMBR1LQ6UX01 489 aa17.75■□□□□ 0.43
SNX6-206ENST00000556162 DDX19BQ9UMR2 479 aa17.75■□□□□ 0.43
SNX6-206ENST00000556162 CHMP3Q9Y3E7 222 aa17.75■□□□□ 0.43
SNX6-206ENST00000556162 DCAF8L1A6NGE4 600 aa17.75■□□□□ 0.43
SNX6-206ENST00000556162 ZBTB7BO15156 539 aaPredicted RBP17.75■□□□□ 0.43
SNX6-206ENST00000556162 PRPF40BQ6NWY9 871 aaKnown RBP17.75■□□□□ 0.43
SNX6-206ENST00000556162 BICC1Q9H694 974 aaKnown RBP17.75■□□□□ 0.43
SNX6-206ENST00000556162 GREM2Q9H772 168 aa17.75■□□□□ 0.43
SNX6-206ENST00000556162 COL11A2P13942 1736 aaPredicted RBP17.74■□□□□ 0.43
SNX6-206ENST00000556162 BBOX1O75936 387 aa17.74■□□□□ 0.43
SNX6-206ENST00000556162 GNAI2P04899 355 aa17.74■□□□□ 0.43
SNX6-206ENST00000556162 GRAPQ13588 217 aa17.74■□□□□ 0.43
SNX6-206ENST00000556162 GRAPLQ8TC17 118 aaPredicted RBP17.74■□□□□ 0.43
SNX6-206ENST00000556162 CHMP4BQ9H444 224 aaKnown RBP17.74■□□□□ 0.43
SNX6-206ENST00000556162 SEC31BQ9NQW1 1179 aa17.74■□□□□ 0.43
SNX6-206ENST00000556162 LAMB2P55268 1798 aa17.74■□□□□ 0.43
SNX6-206ENST00000556162 UTRNP46939 3433 aa17.74■□□□□ 0.43
SNX6-206ENST00000556162 LRRFIP2Q9Y608 721 aaKnown RBP17.73■□□□□ 0.43
SNX6-206ENST00000556162 FAM161AQ3B820 660 aa17.73■□□□□ 0.43
SNX6-206ENST00000556162 RABL6Q3YEC7 729 aaPredicted RBP17.73■□□□□ 0.43
SNX6-206ENST00000556162 CDC5LQ99459 802 aaKnown RBP17.73■□□□□ 0.43
SNX6-206ENST00000556162 RTL9Q8NET4 1388 aa17.72■□□□□ 0.43
SNX6-206ENST00000556162 ITGA6P23229 1130 aa17.72■□□□□ 0.43
SNX6-206ENST00000556162 RPS8P62241 208 aaKnown RBP17.72■□□□□ 0.43
SNX6-206ENST00000556162 IFIT5Q13325 482 aaKnown RBP17.72■□□□□ 0.43
SNX6-206ENST00000556162 CCDC57Q2TAC2 916 aa17.72■□□□□ 0.43
SNX6-206ENST00000556162 ANKRD44Q8N8A2 993 aa17.72■□□□□ 0.43
SNX6-206ENST00000556162 CELF1Q92879 486 aaKnown RBP17.72■□□□□ 0.43
SNX6-206ENST00000556162 TMX4Q9H1E5 349 aaPredicted RBP17.72■□□□□ 0.43
SNX6-206ENST00000556162 ZNF219Q9P2Y4 722 aaPredicted RBP17.72■□□□□ 0.43
SNX6-206ENST00000556162 DLEC1Q9Y238 1755 aa17.72■□□□□ 0.43
SNX6-206ENST00000556162 ANKRD18BA2A2Z9 1011 aa17.71■□□□□ 0.43
SNX6-206ENST00000556162 PPEF1O14829 653 aaPredicted RBP17.71■□□□□ 0.43
SNX6-206ENST00000556162 C21orf2O43822 256 aa17.71■□□□□ 0.43
SNX6-206ENST00000556162 CENPBP07199 599 aaPredicted RBP17.71■□□□□ 0.43
SNX6-206ENST00000556162 YBX3P16989 372 aaKnown RBP eCLIP17.71■□□□□ 0.435e-10■■□□□ 13
SNX6-206ENST00000556162 TMC4Q7Z404 712 aa17.71■□□□□ 0.43
SNX6-206ENST00000556162 ANKRD18AQ8IVF6 992 aa17.71■□□□□ 0.43
SNX6-206ENST00000556162 GRIN3BO60391 1043 aa17.7■□□□□ 0.42
SNX6-206ENST00000556162 SOGA3Q5TF21 947 aa17.7■□□□□ 0.42
SNX6-206ENST00000556162 MYH3P11055 1940 aa17.7■□□□□ 0.42
SNX6-206ENST00000556162 IGHMBP2P38935 993 aaKnown RBP17.69■□□□□ 0.42
SNX6-206ENST00000556162 TAF7LQ5H9L4 462 aa17.69■□□□□ 0.42
SNX6-206ENST00000556162 C7orf43Q8WVR3 580 aa17.69■□□□□ 0.42
SNX6-206ENST00000556162 ATP6V0A2Q9Y487 856 aa17.69■□□□□ 0.42
SNX6-206ENST00000556162 BRCA1P38398 1863 aaKnown RBP17.69■□□□□ 0.42
SNX6-206ENST00000556162 CC2D2BQ6DHV5 1058 aa17.69■□□□□ 0.42
SNX6-206ENST00000556162 SP8Q8IXZ3 490 aa17.69■□□□□ 0.42
SNX6-206ENST00000556162 MPHOSPH8Q99549 860 aa17.68■□□□□ 0.42
SNX6-206ENST00000556162 C1orf115Q9H7X2 142 aa17.68■□□□□ 0.42
SNX6-206ENST00000556162 ZBTB40Q9NUA8 1239 aa17.68■□□□□ 0.42
SNX6-206ENST00000556162 SLX4Q8IY92 1834 aa17.68■□□□□ 0.42
SNX6-206ENST00000556162 ARHGAP27Q6ZUM4 889 aa17.67■□□□□ 0.42
SNX6-206ENST00000556162 BSDC1Q9NW68 430 aaPredicted RBP17.67■□□□□ 0.42
SNX6-206ENST00000556162 GRIPAP1Q4V328 841 aa17.67■□□□□ 0.42
SNX6-206ENST00000556162 CCDC93Q567U6 631 aa17.67■□□□□ 0.42
SNX6-206ENST00000556162 SRGAP3O43295 1099 aa17.66■□□□□ 0.42
SNX6-206ENST00000556162 MTX1Q13505 466 aa17.66■□□□□ 0.42
SNX6-206ENST00000556162 OLFM4Q6UX06 510 aa17.66■□□□□ 0.42
SNX6-206ENST00000556162 RTKN2Q8IZC4 609 aa17.66■□□□□ 0.42
SNX6-206ENST00000556162 ZNF594Q96JF6 807 aaPredicted RBP17.66■□□□□ 0.42
SNX6-206ENST00000556162 LDHAL6AQ6ZMR3 332 aa17.65■□□□□ 0.42
SNX6-206ENST00000556162 CRBNQ96SW2 442 aa17.65■□□□□ 0.42
SNX6-206ENST00000556162 TAF1P21675 1872 aa17.65■□□□□ 0.42
SNX6-206ENST00000556162 ATP8B2P98198 1209 aa17.65■□□□□ 0.42
SNX6-206ENST00000556162 CACNA1SQ13698 1873 aa17.64■□□□□ 0.41
SNX6-206ENST00000556162 CNNM1Q9NRU3 951 aa17.64■□□□□ 0.41
SNX6-206ENST00000556162 RFX5P48382 616 aaPredicted RBP17.63■□□□□ 0.41
SNX6-206ENST00000556162 MPNDQ8N594 471 aa17.63■□□□□ 0.41
SNX6-206ENST00000556162 NSFL1CQ9UNZ2 370 aaKnown RBP17.63■□□□□ 0.41
SNX6-206ENST00000556162 ARFGEF1Q9Y6D6 1849 aa17.63■□□□□ 0.41
SNX6-206ENST00000556162 PTPN12Q05209 780 aaKnown RBP17.63■□□□□ 0.41
SNX6-206ENST00000556162 DPP8Q6V1X1 898 aaPredicted RBP17.63■□□□□ 0.41
SNX6-206ENST00000556162 SLC51AQ86UW1 340 aa17.63■□□□□ 0.41
SNX6-206ENST00000556162 KLHDC4Q8TBB5 520 aa17.63■□□□□ 0.41
SNX6-206ENST00000556162 ANKIB1Q9P2G1 1089 aa17.63■□□□□ 0.41
SNX6-206ENST00000556162 MINPP1Q9UNW1 487 aa17.63■□□□□ 0.41
SNX6-206ENST00000556162 COL4A1P02462 1669 aa17.62■□□□□ 0.41
SNX6-206ENST00000556162 PNMA6EA0A0J9YXQ4 647 aa17.62■□□□□ 0.41
SNX6-206ENST00000556162 CEP85Q6P2H3 762 aa17.62■□□□□ 0.41
SNX6-206ENST00000556162 RPAP2Q8IXW5 612 aaPredicted RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms