RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 LMO7Q8WWI1 1683 aa20.73■□□□□ 0.91
SYNE3-202ENST00000553340 NR1I2O75469 434 aa20.73■□□□□ 0.91
SYNE3-202ENST00000553340 CAVIN2O95810 425 aa20.73■□□□□ 0.91
SYNE3-202ENST00000553340 ZSCAN25Q6NSZ9 544 aa20.73■□□□□ 0.91
SYNE3-202ENST00000553340 KAZALD1Q96I82 304 aa20.73■□□□□ 0.91
SYNE3-202ENST00000553340 NRBP1Q9UHY1 535 aa20.73■□□□□ 0.91
SYNE3-202ENST00000553340 TAF6LQ9Y6J9 622 aa20.73■□□□□ 0.91
SYNE3-202ENST00000553340 UTYO14607 1347 aa20.73■□□□□ 0.91
SYNE3-202ENST00000553340 KRT32Q14532 448 aa20.73■□□□□ 0.91
SYNE3-202ENST00000553340 DDX58O95786 925 aaKnown RBP20.72■□□□□ 0.91
SYNE3-202ENST00000553340 PLPPR3Q6T4P5 718 aa20.72■□□□□ 0.91
SYNE3-202ENST00000553340 GTPBP4Q9BZE4 634 aaKnown RBP20.72■□□□□ 0.91
SYNE3-202ENST00000553340 JCADQ9P266 1359 aa20.72■□□□□ 0.91
SYNE3-202ENST00000553340 RNMTO43148 476 aaKnown RBP20.72■□□□□ 0.91
SYNE3-202ENST00000553340 CEBPAP49715 358 aaPredicted RBP20.72■□□□□ 0.91
SYNE3-202ENST00000553340 PGBD1Q96JS3 809 aa20.72■□□□□ 0.91
SYNE3-202ENST00000553340 C16orf45Q96MC5 204 aaPredicted RBP20.72■□□□□ 0.91
SYNE3-202ENST00000553340 DNAJC25Q9H1X3 360 aa20.72■□□□□ 0.91
SYNE3-202ENST00000553340 SMTNL1A8MU46 457 aa20.71■□□□□ 0.91
SYNE3-202ENST00000553340 AMOTQ4VCS5 1084 aa20.71■□□□□ 0.91
SYNE3-202ENST00000553340 C1orf141Q5JVX7 400 aa20.71■□□□□ 0.91
SYNE3-202ENST00000553340 ZNF589Q86UQ0 364 aaPredicted RBP20.71■□□□□ 0.91
SYNE3-202ENST00000553340 SIL1Q9H173 461 aa20.71■□□□□ 0.91
SYNE3-202ENST00000553340 GTF3C6Q969F1 213 aa20.71■□□□□ 0.91
SYNE3-202ENST00000553340 CLIP2Q9UDT6 1046 aa20.71■□□□□ 0.91
SYNE3-202ENST00000553340 SETD1BQ9UPS6 1966 aaKnown RBP20.7■□□□□ 0.91
SYNE3-202ENST00000553340 TAF5LO75529 589 aa20.7■□□□□ 0.9
SYNE3-202ENST00000553340 SYCP1Q15431 976 aa20.7■□□□□ 0.9
SYNE3-202ENST00000553340 TNNT1P13805 278 aa20.7■□□□□ 0.9
SYNE3-202ENST00000553340 CFAP45Q9UL16 551 aa20.7■□□□□ 0.9
SYNE3-202ENST00000553340 H3BQV1 296 aa20.69■□□□□ 0.9
SYNE3-202ENST00000553340 KCNA6P17658 529 aa20.69■□□□□ 0.9
SYNE3-202ENST00000553340 RESTQ13127 1097 aa20.69■□□□□ 0.9
SYNE3-202ENST00000553340 IFFO2Q5TF58 517 aa20.69■□□□□ 0.9
SYNE3-202ENST00000553340 USPL1Q5W0Q7 1092 aa20.69■□□□□ 0.9
SYNE3-202ENST00000553340 BRF1Q92994 677 aa20.69■□□□□ 0.9
SYNE3-202ENST00000553340 ZSCAN16Q9H4T2 348 aaPredicted RBP20.69■□□□□ 0.9
SYNE3-202ENST00000553340 PAXBP1Q9Y5B6 917 aa20.69■□□□□ 0.9
SYNE3-202ENST00000553340 HEG1Q9ULI3 1381 aa20.69■□□□□ 0.9
SYNE3-202ENST00000553340 NCAPD2Q15021 1401 aa20.69■□□□□ 0.9
SYNE3-202ENST00000553340 JAK2O60674 1132 aa20.69■□□□□ 0.9
SYNE3-202ENST00000553340 PHF8Q9UPP1 1060 aa20.69■□□□□ 0.9
SYNE3-202ENST00000553340 SPDYE4A6NLX3 237 aa20.68■□□□□ 0.9
SYNE3-202ENST00000553340 U2AF2P26368 475 aaKnown RBP eCLIP20.68■□□□□ 0.96e-7■■■■□ 24.5
SYNE3-202ENST00000553340 CDC25BP30305 580 aa20.68■□□□□ 0.9
SYNE3-202ENST00000553340 LRRC59Q96AG4 307 aaKnown RBP20.68■□□□□ 0.9
SYNE3-202ENST00000553340 NEK1Q96PY6 1258 aa20.68■□□□□ 0.9
SYNE3-202ENST00000553340 ZHX1Q9UKY1 873 aaPredicted RBP20.68■□□□□ 0.9
SYNE3-202ENST00000553340 NCBP1Q09161 790 aaKnown RBP20.68■□□□□ 0.9
SYNE3-202ENST00000553340 FEZ1Q99689 392 aa20.68■□□□□ 0.9
SYNE3-202ENST00000553340 NFAT5O94916 1531 aa20.67■□□□□ 0.9
SYNE3-202ENST00000553340 PRAMEF22A3QJZ6 481 aa20.67■□□□□ 0.9
SYNE3-202ENST00000553340 GOLGA6L19H0YKK7 550 aa20.67■□□□□ 0.9
SYNE3-202ENST00000553340 AIMP1Q12904 312 aaKnown RBP20.67■□□□□ 0.9
SYNE3-202ENST00000553340 CACTINQ8WUQ7 758 aaKnown RBP20.67■□□□□ 0.9
SYNE3-202ENST00000553340 DDX21Q9NR30 783 aaKnown RBP eCLIP20.67■□□□□ 0.9
SYNE3-202ENST00000553340 OVOS2A0A0G2JMS6 1433 aa20.67■□□□□ 0.9
SYNE3-202ENST00000553340 KCNH5Q8NCM2 988 aa20.67■□□□□ 0.9
SYNE3-202ENST00000553340 HSP90B1P14625 803 aaKnown RBP20.66■□□□□ 0.9
SYNE3-202ENST00000553340 TPD52L1Q16890 204 aaPredicted RBP20.66■□□□□ 0.9
SYNE3-202ENST00000553340 THEMISQ8N1K5 641 aaPredicted RBP20.66■□□□□ 0.9
SYNE3-202ENST00000553340 CCDC112Q8NEF3 446 aa20.66■□□□□ 0.9
SYNE3-202ENST00000553340 Q6ZUG5 572 aa20.65■□□□□ 0.9
SYNE3-202ENST00000553340 KLHDC4Q8TBB5 520 aa20.65■□□□□ 0.9
SYNE3-202ENST00000553340 CTAGE5O15320 804 aa20.65■□□□□ 0.9
SYNE3-202ENST00000553340 SARM1Q6SZW1 724 aa20.65■□□□□ 0.9
SYNE3-202ENST00000553340 RIC3Q7Z5B4 369 aa20.65■□□□□ 0.9
SYNE3-202ENST00000553340 DDX11Q96FC9 970 aa20.65■□□□□ 0.9
SYNE3-202ENST00000553340 U3KPZ7 1027 aaPredicted RBP20.65■□□□□ 0.9
SYNE3-202ENST00000553340 RGPD2P0DJD1 1756 aa20.64■□□□□ 0.9
SYNE3-202ENST00000553340 CCDC144BQ3MJ40 725 aa20.64■□□□□ 0.9
SYNE3-202ENST00000553340 CCDC144CPQ8IYA2 1237 aa20.64■□□□□ 0.9
SYNE3-202ENST00000553340 EDC3Q96F86 508 aaKnown RBP20.64■□□□□ 0.9
SYNE3-202ENST00000553340 NEMFO60524 1076 aa20.64■□□□□ 0.89
SYNE3-202ENST00000553340 IGKV5-2P06315 115 aa20.64■□□□□ 0.89
SYNE3-202ENST00000553340 ATP5JP18859 108 aa20.64■□□□□ 0.89
SYNE3-202ENST00000553340 NEXNQ0ZGT2 675 aa20.64■□□□□ 0.89
SYNE3-202ENST00000553340 IQCB1Q15051 598 aa20.64■□□□□ 0.89
SYNE3-202ENST00000553340 MRC1P22897 1456 aa20.64■□□□□ 0.89
SYNE3-202ENST00000553340 PXDNQ92626 1479 aa20.64■□□□□ 0.89
SYNE3-202ENST00000553340 MRFAP1L1Q96HT8 127 aa20.63■□□□□ 0.89
SYNE3-202ENST00000553340 STX1AQ16623 288 aa20.63■□□□□ 0.89
SYNE3-202ENST00000553340 LRRC8AQ8IWT6 810 aa20.63■□□□□ 0.89
SYNE3-202ENST00000553340 LLPHQ9BRT6 129 aaKnown RBP20.62■□□□□ 0.89
SYNE3-202ENST00000553340 OGFRQ9NZT2 677 aa20.62■□□□□ 0.89
SYNE3-202ENST00000553340 KIF20AO95235 890 aa20.62■□□□□ 0.89
SYNE3-202ENST00000553340 FGD1P98174 961 aa20.62■□□□□ 0.89
SYNE3-202ENST00000553340 CGNQ9P2M7 1197 aaKnown RBP20.62■□□□□ 0.89
SYNE3-202ENST00000553340 COL15A1P39059 1388 aa20.61■□□□□ 0.89
SYNE3-202ENST00000553340 CEBPZQ03701 1054 aaKnown RBP20.61■□□□□ 0.89
SYNE3-202ENST00000553340 CEP135Q66GS9 1140 aa20.61■□□□□ 0.89
SYNE3-202ENST00000553340 SMARCC2Q8TAQ2 1214 aa20.61■□□□□ 0.89
SYNE3-202ENST00000553340 RFX7Q2KHR2 1363 aa20.61■□□□□ 0.89
SYNE3-202ENST00000553340 NEURL1BA8MQ27 555 aa20.61■□□□□ 0.89
SYNE3-202ENST00000553340 SCRN1Q12765 414 aa20.61■□□□□ 0.89
SYNE3-202ENST00000553340 PDIA6Q15084 440 aa20.61■□□□□ 0.89
SYNE3-202ENST00000553340 DBNLQ9UJU6 430 aaKnown RBP20.61■□□□□ 0.89
SYNE3-202ENST00000553340 CYP21A2P08686 494 aa20.6■□□□□ 0.89
SYNE3-202ENST00000553340 GCKRQ14397 625 aa20.6■□□□□ 0.89
SYNE3-202ENST00000553340 NAA16Q6N069 864 aaPredicted RBP20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms