RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 GRAPQ13588 217 aa11.73□□□□□ -0.53
SNHG1-215ENST00000540904 GCKRQ14397 625 aa11.73□□□□□ -0.53
SNHG1-215ENST00000540904 SF3B3Q15393 1217 aaKnown RBP11.73□□□□□ -0.53
SNHG1-215ENST00000540904 ALDH1L2Q3SY69 923 aa11.73□□□□□ -0.53
SNHG1-215ENST00000540904 BEND3Q5T5X7 828 aa11.73□□□□□ -0.53
SNHG1-215ENST00000540904 SLC51AQ86UW1 340 aa11.73□□□□□ -0.53
SNHG1-215ENST00000540904 RTKN2Q8IZC4 609 aa11.73□□□□□ -0.53
SNHG1-215ENST00000540904 GRAPLQ8TC17 118 aaPredicted RBP11.73□□□□□ -0.53
SNHG1-215ENST00000540904 CCDC85AQ96PX6 553 aaPredicted RBP11.73□□□□□ -0.53
SNHG1-215ENST00000540904 TMX4Q9H1E5 349 aaPredicted RBP11.73□□□□□ -0.53
SNHG1-215ENST00000540904 CDHR2Q9BYE9 1310 aa11.72□□□□□ -0.53
SNHG1-215ENST00000540904 LTBP3Q9NS15 1303 aa11.72□□□□□ -0.53
SNHG1-215ENST00000540904 H7C1W4 665 aa11.72□□□□□ -0.53
SNHG1-215ENST00000540904 BBOX1O75936 387 aa11.72□□□□□ -0.53
SNHG1-215ENST00000540904 FKBP4Q02790 459 aaKnown RBP eCLIP11.72□□□□□ -0.53
SNHG1-215ENST00000540904 PTPRCP08575 1304 aa11.71□□□□□ -0.53
SNHG1-215ENST00000540904 ZBED9Q6R2W3 1325 aa11.71□□□□□ -0.53
SNHG1-215ENST00000540904 CTSWP56202 376 aa11.71□□□□□ -0.53
SNHG1-215ENST00000540904 CCDC152Q4G0S7 254 aa11.71□□□□□ -0.53
SNHG1-215ENST00000540904 CC2D2BQ6DHV5 1058 aa11.71□□□□□ -0.53
SNHG1-215ENST00000540904 GPBP1L1Q9HC44 474 aaPredicted RBP11.71□□□□□ -0.53
SNHG1-215ENST00000540904 ZNF277Q9NRM2 450 aaPredicted RBP11.71□□□□□ -0.53
SNHG1-215ENST00000540904 ATP6V0A2Q9Y487 856 aa11.71□□□□□ -0.53
SNHG1-215ENST00000540904 RARSP54136 660 aaKnown RBP11.7□□□□□ -0.54
SNHG1-215ENST00000540904 SP8Q8IXZ3 490 aa11.7□□□□□ -0.54
SNHG1-215ENST00000540904 CELF1Q92879 486 aaKnown RBP11.7□□□□□ -0.54
SNHG1-215ENST00000540904 SRCIN1Q9C0H9 1055 aa11.7□□□□□ -0.54
SNHG1-215ENST00000540904 SEC31BQ9NQW1 1179 aa11.7□□□□□ -0.54
SNHG1-215ENST00000540904 NOB1Q9ULX3 412 aaKnown RBP11.7□□□□□ -0.54
SNHG1-215ENST00000540904 CACNA1SQ13698 1873 aa11.7□□□□□ -0.54
SNHG1-215ENST00000540904 ALDH1L1O75891 902 aa11.69□□□□□ -0.54
SNHG1-215ENST00000540904 CASP7P55210 303 aa11.69□□□□□ -0.54
SNHG1-215ENST00000540904 RPS8P62241 208 aaKnown RBP11.69□□□□□ -0.54
SNHG1-215ENST00000540904 GRIPAP1Q4V328 841 aa11.69□□□□□ -0.54
SNHG1-215ENST00000540904 TTLL11Q8NHH1 800 aa11.69□□□□□ -0.54
SNHG1-215ENST00000540904 PSMD1Q99460 953 aa11.69□□□□□ -0.54
SNHG1-215ENST00000540904 C9orf78Q9NZ63 289 aaPredicted RBP11.69□□□□□ -0.54
SNHG1-215ENST00000540904 DDX60Q8IY21 1712 aaKnown RBP11.69□□□□□ -0.54
SNHG1-215ENST00000540904 ZC3H4Q9UPT8 1303 aaKnown RBP11.68□□□□□ -0.54
SNHG1-215ENST00000540904 GRM8O00222 908 aa11.68□□□□□ -0.54
SNHG1-215ENST00000540904 IARSP41252 1262 aaKnown RBP11.68□□□□□ -0.54
SNHG1-215ENST00000540904 DPP8Q6V1X1 898 aaPredicted RBP11.68□□□□□ -0.54
SNHG1-215ENST00000540904 TMC4Q7Z404 712 aa11.68□□□□□ -0.54
SNHG1-215ENST00000540904 MPNDQ8N594 471 aa11.68□□□□□ -0.54
SNHG1-215ENST00000540904 PLA2G12BQ9BX93 195 aa11.68□□□□□ -0.54
SNHG1-215ENST00000540904 GREM2Q9H772 168 aa11.68□□□□□ -0.54
SNHG1-215ENST00000540904 SNED1Q8TER0 1413 aa11.68□□□□□ -0.54
SNHG1-215ENST00000540904 LAMB2P55268 1798 aa11.67□□□□□ -0.54
SNHG1-215ENST00000540904 CACNA1FO60840 1977 aa11.67□□□□□ -0.54
SNHG1-215ENST00000540904 BRPF1P55201 1214 aaPredicted RBP11.67□□□□□ -0.54
SNHG1-215ENST00000540904 SAMD1Q6SPF0 538 aaPredicted RBP11.67□□□□□ -0.54
SNHG1-215ENST00000540904 ANKRD18AQ8IVF6 992 aa11.67□□□□□ -0.54
SNHG1-215ENST00000540904 CDC5LQ99459 802 aaKnown RBP11.67□□□□□ -0.54
SNHG1-215ENST00000540904 KDM2BQ8NHM5 1336 aa11.66□□□□□ -0.54
SNHG1-215ENST00000540904 KIF16BQ96L93 1317 aa11.66□□□□□ -0.54
SNHG1-215ENST00000540904 FER1L6Q2WGJ9 1857 aa11.66□□□□□ -0.54
SNHG1-215ENST00000540904 GLTPD2A6NH11 291 aa11.66□□□□□ -0.54
SNHG1-215ENST00000540904 BCAR3O75815 825 aa11.66□□□□□ -0.54
SNHG1-215ENST00000540904 FAM161AQ3B820 660 aa11.66□□□□□ -0.54
SNHG1-215ENST00000540904 DPY19L2Q6NUT2 758 aa11.66□□□□□ -0.54
SNHG1-215ENST00000540904 LARGE2Q8N3Y3 721 aa11.66□□□□□ -0.54
SNHG1-215ENST00000540904 FRAT1Q92837 279 aaPredicted RBP11.66□□□□□ -0.54
SNHG1-215ENST00000540904 API5Q9BZZ5 524 aaKnown RBP11.66□□□□□ -0.54
SNHG1-215ENST00000540904 NMRK2Q9NPI5 230 aa11.66□□□□□ -0.54
SNHG1-215ENST00000540904 NSFL1CQ9UNZ2 370 aaKnown RBP11.66□□□□□ -0.54
SNHG1-215ENST00000540904 CHMP3Q9Y3E7 222 aa11.66□□□□□ -0.54
SNHG1-215ENST00000540904 PPIP5K2O43314 1243 aa11.65□□□□□ -0.54
SNHG1-215ENST00000540904 CSF1RP07333 972 aa11.65□□□□□ -0.54
SNHG1-215ENST00000540904 NBPF7P0C2Y1 421 aaPredicted RBP11.65□□□□□ -0.54
SNHG1-215ENST00000540904 ITGA6P23229 1130 aa11.65□□□□□ -0.54
SNHG1-215ENST00000540904 GPSM2P81274 684 aa11.65□□□□□ -0.54
SNHG1-215ENST00000540904 FOXO4P98177 505 aa11.65□□□□□ -0.54
SNHG1-215ENST00000540904 AOC3Q16853 763 aa11.65□□□□□ -0.54
SNHG1-215ENST00000540904 SUPT20HQ8NEM7 779 aa11.65□□□□□ -0.54
SNHG1-215ENST00000540904 JDP2Q8WYK2 163 aa11.65□□□□□ -0.54
SNHG1-215ENST00000540904 RTFDC1Q9BY42 306 aaPredicted RBP11.65□□□□□ -0.54
SNHG1-215ENST00000540904 RTL9Q8NET4 1388 aa11.65□□□□□ -0.55
SNHG1-215ENST00000540904 COL4A1P02462 1669 aa11.65□□□□□ -0.55
SNHG1-215ENST00000540904 SBF1O95248 1867 aa11.64□□□□□ -0.55
SNHG1-215ENST00000540904 C6orf229H3BNL8 230 aa11.64□□□□□ -0.55
SNHG1-215ENST00000540904 IPO8O15397 1037 aaKnown RBP11.64□□□□□ -0.55
SNHG1-215ENST00000540904 CCT4P50991 539 aaKnown RBP11.64□□□□□ -0.55
SNHG1-215ENST00000540904 EPHA10Q5JZY3 1008 aa11.64□□□□□ -0.55
SNHG1-215ENST00000540904 LMBR1LQ6UX01 489 aa11.64□□□□□ -0.55
SNHG1-215ENST00000540904 NIM1KQ8IY84 436 aa11.64□□□□□ -0.55
SNHG1-215ENST00000540904 ARHGAP45Q92619 1136 aa11.64□□□□□ -0.55
SNHG1-215ENST00000540904 SUCLG2Q96I99 432 aa11.64□□□□□ -0.55
SNHG1-215ENST00000540904 ANKIB1Q9P2G1 1089 aa11.64□□□□□ -0.55
SNHG1-215ENST00000540904 ANKRD18BA2A2Z9 1011 aa11.63□□□□□ -0.55
SNHG1-215ENST00000540904 DDNO94850 711 aaPredicted RBP11.63□□□□□ -0.55
SNHG1-215ENST00000540904 IGHMBP2P38935 993 aaKnown RBP11.63□□□□□ -0.55
SNHG1-215ENST00000540904 IFIT5Q13325 482 aaKnown RBP11.63□□□□□ -0.55
SNHG1-215ENST00000540904 USP44Q9H0E7 712 aa11.63□□□□□ -0.55
SNHG1-215ENST00000540904 VPS33BQ9H267 617 aa11.63□□□□□ -0.55
SNHG1-215ENST00000540904 RRAGCQ9HB90 399 aa11.63□□□□□ -0.55
SNHG1-215ENST00000540904 BSDC1Q9NW68 430 aaPredicted RBP11.63□□□□□ -0.55
SNHG1-215ENST00000540904 TAF1P21675 1872 aa11.63□□□□□ -0.55
SNHG1-215ENST00000540904 UTYO14607 1347 aa11.62□□□□□ -0.55
SNHG1-215ENST00000540904 ZNF541Q9H0D2 1346 aa11.62□□□□□ -0.55
SNHG1-215ENST00000540904 FZD9O00144 591 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 409.8 ms