RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 IPO9Q96P70 1041 aaKnown RBP15.44■□□□□ 0.06
SMAD3-204ENST00000540846 COL11A2P13942 1736 aaPredicted RBP15.43■□□□□ 0.06
SMAD3-204ENST00000540846 TAF1P21675 1872 aa15.43■□□□□ 0.06
SMAD3-204ENST00000540846 CSF1RP07333 972 aa15.43■□□□□ 0.06
SMAD3-204ENST00000540846 R3HDM1Q15032 1099 aaKnown RBP15.43■□□□□ 0.06
SMAD3-204ENST00000540846 PRR5LQ6MZQ0 368 aa15.43■□□□□ 0.06
SMAD3-204ENST00000540846 NBPF5PQ86XG9 351 aaPredicted RBP15.43■□□□□ 0.06
SMAD3-204ENST00000540846 SLC16A10Q8TF71 515 aa15.43■□□□□ 0.06
SMAD3-204ENST00000540846 NYXQ9GZU5 481 aa15.43■□□□□ 0.06
SMAD3-204ENST00000540846 HDAC5Q9UQL6 1122 aa15.43■□□□□ 0.06
SMAD3-204ENST00000540846 KIF13BQ9NQT8 1826 aa15.43■□□□□ 0.06
SMAD3-204ENST00000540846 SERPINB2P05120 415 aa15.42■□□□□ 0.06
SMAD3-204ENST00000540846 MMP10P09238 476 aa15.42■□□□□ 0.06
SMAD3-204ENST00000540846 HCLS1P14317 486 aaPredicted RBP15.42■□□□□ 0.06
SMAD3-204ENST00000540846 C3orf67Q6ZVT6 689 aa15.42■□□□□ 0.06
SMAD3-204ENST00000540846 SPEF2Q9C093 1822 aa15.42■□□□□ 0.06
SMAD3-204ENST00000540846 PDE8AO60658 829 aa15.41■□□□□ 0.06
SMAD3-204ENST00000540846 RFX5P48382 616 aaPredicted RBP15.41■□□□□ 0.06
SMAD3-204ENST00000540846 CTSWP56202 376 aa15.41■□□□□ 0.06
SMAD3-204ENST00000540846 LMBR1LQ6UX01 489 aa15.41■□□□□ 0.06
SMAD3-204ENST00000540846 TPTE2Q6XPS3 522 aa15.41■□□□□ 0.06
SMAD3-204ENST00000540846 TTLL11Q8NHH1 800 aa15.41■□□□□ 0.06
SMAD3-204ENST00000540846 ZBTB47Q9UFB7 747 aaPredicted RBP15.41■□□□□ 0.06
SMAD3-204ENST00000540846 PLEKHM2Q8IWE5 1019 aa15.41■□□□□ 0.06
SMAD3-204ENST00000540846 CNBD1Q8NA66 436 aa15.41■□□□□ 0.06
SMAD3-204ENST00000540846 RTL9Q8NET4 1388 aa15.4■□□□□ 0.06
SMAD3-204ENST00000540846 A0A1B0GUL6 1792 aa15.4■□□□□ 0.06
SMAD3-204ENST00000540846 SOCS7O14512 581 aa15.4■□□□□ 0.06
SMAD3-204ENST00000540846 SRGAP3O43295 1099 aa15.4■□□□□ 0.06
SMAD3-204ENST00000540846 SEC24BO95487 1268 aa15.4■□□□□ 0.06
SMAD3-204ENST00000540846 CCDC24Q8N4L8 307 aa15.4■□□□□ 0.06
SMAD3-204ENST00000540846 KIAA1551Q9HCM1 1747 aa15.4■□□□□ 0.06
SMAD3-204ENST00000540846 DLEC1Q9Y238 1755 aa15.39■□□□□ 0.05
SMAD3-204ENST00000540846 PSDA5PKW4 1024 aaPredicted RBP15.38■□□□□ 0.05
SMAD3-204ENST00000540846 SF3B3Q15393 1217 aaKnown RBP15.38■□□□□ 0.05
SMAD3-204ENST00000540846 EXOC6BQ9Y2D4 811 aa15.38■□□□□ 0.05
SMAD3-204ENST00000540846 C10orf71Q711Q0 1435 aa15.38■□□□□ 0.05
SMAD3-204ENST00000540846 PTPN12Q05209 780 aaKnown RBP15.37■□□□□ 0.05
SMAD3-204ENST00000540846 DDRGK1Q96HY6 314 aa15.37■□□□□ 0.05
SMAD3-204ENST00000540846 SGIP1Q9BQI5 828 aa15.37■□□□□ 0.05
SMAD3-204ENST00000540846 GREM2Q9H772 168 aa15.37■□□□□ 0.05
SMAD3-204ENST00000540846 KLRG2A4D1S0 409 aaPredicted RBP15.36■□□□□ 0.05
SMAD3-204ENST00000540846 SMARCA5O60264 1052 aaPredicted RBP15.36■□□□□ 0.05
SMAD3-204ENST00000540846 ZBTB7AO95365 584 aa15.36■□□□□ 0.05
SMAD3-204ENST00000540846 HSP90B1P14625 803 aaKnown RBP15.36■□□□□ 0.05
SMAD3-204ENST00000540846 CRY2Q49AN0 593 aa15.36■□□□□ 0.05
SMAD3-204ENST00000540846 TTC22Q5TAA0 569 aa15.36■□□□□ 0.05
SMAD3-204ENST00000540846 LRRCC1Q9C099 1032 aa15.36■□□□□ 0.05
SMAD3-204ENST00000540846 MTFR1LQ9H019 292 aa15.36■□□□□ 0.05
SMAD3-204ENST00000540846 UPF2Q9HAU5 1272 aaKnown RBP15.36■□□□□ 0.05
SMAD3-204ENST00000540846 PA2G4Q9UQ80 394 aaKnown RBP15.36■□□□□ 0.05
SMAD3-204ENST00000540846 NOP58Q9Y2X3 529 aaKnown RBP15.36■□□□□ 0.05
SMAD3-204ENST00000540846 PARP3Q9Y6F1 533 aa15.36■□□□□ 0.05
SMAD3-204ENST00000540846 SALL3Q9BXA9 1300 aa15.36■□□□□ 0.05
SMAD3-204ENST00000540846 APBB1O00213 710 aa15.36■□□□□ 0.05
SMAD3-204ENST00000540846 GSPT1P15170 499 aaKnown RBP15.36■□□□□ 0.05
SMAD3-204ENST00000540846 GTF2E1P29083 439 aaPredicted RBP15.36■□□□□ 0.05
SMAD3-204ENST00000540846 C16orf71Q8IYS4 520 aaPredicted RBP15.36■□□□□ 0.05
SMAD3-204ENST00000540846 KLHDC4Q8TBB5 520 aa15.36■□□□□ 0.05
SMAD3-204ENST00000540846 OTUD7AQ8TE49 926 aaPredicted RBP15.36■□□□□ 0.05
SMAD3-204ENST00000540846 CCDC85AQ96PX6 553 aaPredicted RBP15.36■□□□□ 0.05
SMAD3-204ENST00000540846 COPRSQ9NQ92 184 aa15.36■□□□□ 0.05
SMAD3-204ENST00000540846 RAB11FIP3O75154 756 aa15.35■□□□□ 0.05
SMAD3-204ENST00000540846 ST5P78524 1137 aa15.35■□□□□ 0.05
SMAD3-204ENST00000540846 TBC1D32Q96NH3 1257 aa15.35■□□□□ 0.05
SMAD3-204ENST00000540846 OSBPL3Q9H4L5 887 aa15.35■□□□□ 0.05
SMAD3-204ENST00000540846 LRRC37AA6NMS7 1700 aa15.34■□□□□ 0.05
SMAD3-204ENST00000540846 ITGA6P23229 1130 aa15.34■□□□□ 0.05
SMAD3-204ENST00000540846 NLRP3Q96P20 1036 aa15.34■□□□□ 0.05
SMAD3-204ENST00000540846 BRIP1Q9BX63 1249 aa15.34■□□□□ 0.05
SMAD3-204ENST00000540846 SEC31BQ9NQW1 1179 aa15.34■□□□□ 0.05
SMAD3-204ENST00000540846 CACNA1SQ13698 1873 aa15.34■□□□□ 0.05
SMAD3-204ENST00000540846 PTGER2P43116 358 aa15.33■□□□□ 0.05
SMAD3-204ENST00000540846 CCDC152Q4G0S7 254 aa15.33■□□□□ 0.05
SMAD3-204ENST00000540846 ZNF594Q96JF6 807 aaPredicted RBP15.33■□□□□ 0.05
SMAD3-204ENST00000540846 CHMP3Q9Y3E7 222 aa15.33■□□□□ 0.05
SMAD3-204ENST00000540846 BRCA1P38398 1863 aaKnown RBP15.33■□□□□ 0.04
SMAD3-204ENST00000540846 IFIT5Q13325 482 aaKnown RBP15.32■□□□□ 0.04
SMAD3-204ENST00000540846 HSP90AB4PQ58FF6 505 aa15.32■□□□□ 0.04
SMAD3-204ENST00000540846 ATG9AQ7Z3C6 839 aa15.32■□□□□ 0.04
SMAD3-204ENST00000540846 ATF5Q9Y2D1 282 aaPredicted RBP15.32■□□□□ 0.04
SMAD3-204ENST00000540846 NPHP1O15259 732 aa15.32■□□□□ 0.04
SMAD3-204ENST00000540846 CDC45O75419 566 aa15.32■□□□□ 0.04
SMAD3-204ENST00000540846 SURF6O75683 361 aaKnown RBP15.32■□□□□ 0.04
SMAD3-204ENST00000540846 PDE1AP54750 535 aa15.32■□□□□ 0.04
SMAD3-204ENST00000540846 CCDC57Q2TAC2 916 aa15.32■□□□□ 0.04
SMAD3-204ENST00000540846 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.32■□□□□ 0.04
SMAD3-204ENST00000540846 AOX1Q06278 1338 aa15.31■□□□□ 0.04
SMAD3-204ENST00000540846 ANKRD18BA2A2Z9 1011 aa15.31■□□□□ 0.04
SMAD3-204ENST00000540846 SASH1O94885 1247 aa15.31■□□□□ 0.04
SMAD3-204ENST00000540846 HOXA10P31260 410 aaPredicted RBP15.31■□□□□ 0.04
SMAD3-204ENST00000540846 TBC1D9Q6ZT07 1266 aa15.31■□□□□ 0.04
SMAD3-204ENST00000540846 PUS3Q9BZE2 481 aaKnown RBP15.31■□□□□ 0.04
SMAD3-204ENST00000540846 STAP2Q9UGK3 403 aa15.31■□□□□ 0.04
SMAD3-204ENST00000540846 LTBP1Q14766 1721 aa15.31■□□□□ 0.04
SMAD3-204ENST00000540846 AK9Q5TCS8 1911 aa15.3■□□□□ 0.04
SMAD3-204ENST00000540846 CIAO1O76071 339 aa15.3■□□□□ 0.04
SMAD3-204ENST00000540846 MX1P20591 662 aa15.3■□□□□ 0.04
SMAD3-204ENST00000540846 MFAP1P55081 439 aaKnown RBP15.3■□□□□ 0.04
SMAD3-204ENST00000540846 LRRC24Q50LG9 513 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms