RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 TTC41PQ6P2S7 1318 aa16.79■□□□□ 0.28
USP48-213ENST00000529637 NEXNQ0ZGT2 675 aa16.79■□□□□ 0.28
USP48-213ENST00000529637 TERF2Q15554 542 aa16.79■□□□□ 0.28
USP48-213ENST00000529637 MAP3K11Q16584 847 aa16.79■□□□□ 0.28
USP48-213ENST00000529637 TPD52L1Q16890 204 aaPredicted RBP16.79■□□□□ 0.28
USP48-213ENST00000529637 KMT5BQ4FZB7 885 aa16.79■□□□□ 0.28
USP48-213ENST00000529637 PDRG1Q9NUG6 133 aa16.79■□□□□ 0.28
USP48-213ENST00000529637 ZKSCAN1P17029 563 aaPredicted RBP16.79■□□□□ 0.28
USP48-213ENST00000529637 GABPB1Q06547 395 aaPredicted RBP16.79■□□□□ 0.28
USP48-213ENST00000529637 FSD1Q9BTV5 496 aa16.79■□□□□ 0.28
USP48-213ENST00000529637 LINS1Q8NG48 757 aa16.78■□□□□ 0.28
USP48-213ENST00000529637 NUP62CLQ9H1M0 184 aa16.78■□□□□ 0.28
USP48-213ENST00000529637 ZNF75DP51815 510 aa16.78■□□□□ 0.28
USP48-213ENST00000529637 DACT1Q9NYF0 836 aa16.78■□□□□ 0.28
USP48-213ENST00000529637 CYP46A1Q9Y6A2 500 aa16.78■□□□□ 0.28
USP48-213ENST00000529637 LTN1O94822 1766 aa16.78■□□□□ 0.28
USP48-213ENST00000529637 FAM227BQ96M60 508 aa16.77■□□□□ 0.28
USP48-213ENST00000529637 ZNF215Q9UL58 517 aaPredicted RBP16.77■□□□□ 0.28
USP48-213ENST00000529637 PXDNQ92626 1479 aa16.77■□□□□ 0.28
USP48-213ENST00000529637 ERICH4A6NGS2 130 aa16.77■□□□□ 0.28
USP48-213ENST00000529637 TCEANC2Q96MN5 208 aa16.77■□□□□ 0.28
USP48-213ENST00000529637 TFIP11Q9UBB9 837 aaKnown RBP16.77■□□□□ 0.28
USP48-213ENST00000529637 SYCP1Q15431 976 aa16.77■□□□□ 0.27
USP48-213ENST00000529637 CDC37L1Q7L3B6 337 aa16.77■□□□□ 0.27
USP48-213ENST00000529637 PLA2G4DQ86XP0 818 aa16.77■□□□□ 0.27
USP48-213ENST00000529637 IRX5P78411 483 aaPredicted RBP16.76■□□□□ 0.27
USP48-213ENST00000529637 ME3Q16798 604 aa16.76■□□□□ 0.27
USP48-213ENST00000529637 NFATC2IPQ8NCF5 419 aa16.76■□□□□ 0.27
USP48-213ENST00000529637 MYD88Q99836 296 aa16.76■□□□□ 0.27
USP48-213ENST00000529637 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.76■□□□□ 0.27
USP48-213ENST00000529637 NPHP1O15259 732 aa16.76■□□□□ 0.27
USP48-213ENST00000529637 TAF3Q5VWG9 929 aa16.76■□□□□ 0.27
USP48-213ENST00000529637 EAF2Q96CJ1 260 aaPredicted RBP16.76■□□□□ 0.27
USP48-213ENST00000529637 EVI5LQ96CN4 794 aa16.76■□□□□ 0.27
USP48-213ENST00000529637 DDX21Q9NR30 783 aaKnown RBP eCLIP16.76■□□□□ 0.27
USP48-213ENST00000529637 TLR7Q9NYK1 1049 aaKnown RBP16.76■□□□□ 0.27
USP48-213ENST00000529637 XAGE3Q8WTP9 111 aa16.75■□□□□ 0.27
USP48-213ENST00000529637 DDX17Q92841 729 aaKnown RBP16.75■□□□□ 0.27
USP48-213ENST00000529637 DNAJC25Q9H1X3 360 aa16.75■□□□□ 0.27
USP48-213ENST00000529637 TNMDQ9H2S6 317 aa16.75■□□□□ 0.27
USP48-213ENST00000529637 RBM8AQ9Y5S9 174 aaKnown RBP16.75■□□□□ 0.27
USP48-213ENST00000529637 NMIQ13287 307 aaPredicted RBP16.75■□□□□ 0.27
USP48-213ENST00000529637 CEP135Q66GS9 1140 aa16.75■□□□□ 0.27
USP48-213ENST00000529637 COPS6Q7L5N1 327 aa16.75■□□□□ 0.27
USP48-213ENST00000529637 CLIP2Q9UDT6 1046 aa16.75■□□□□ 0.27
USP48-213ENST00000529637 RBM6P78332 1123 aaKnown RBP16.74■□□□□ 0.27
USP48-213ENST00000529637 MTX1Q13505 466 aa16.74■□□□□ 0.27
USP48-213ENST00000529637 PAXBP1Q9Y5B6 917 aa16.74■□□□□ 0.27
USP48-213ENST00000529637 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.74■□□□□ 0.27
USP48-213ENST00000529637 EPB41L2O43491 1005 aaKnown RBP16.74■□□□□ 0.27
USP48-213ENST00000529637 SASH1O94885 1247 aa16.74■□□□□ 0.27
USP48-213ENST00000529637 PDE4CQ08493 712 aa16.74■□□□□ 0.27
USP48-213ENST00000529637 ZNF790Q6PG37 636 aa16.74■□□□□ 0.27
USP48-213ENST00000529637 FBXO38Q6PIJ6 1188 aa16.74■□□□□ 0.27
USP48-213ENST00000529637 TTC5Q8N0Z6 440 aa16.74■□□□□ 0.27
USP48-213ENST00000529637 ADGRL3Q9HAR2 1447 aa16.74■□□□□ 0.27
USP48-213ENST00000529637 LARP1Q6PKG0 1096 aaKnown RBP16.74■□□□□ 0.27
USP48-213ENST00000529637 CCDC171Q6TFL3 1326 aa16.73■□□□□ 0.27
USP48-213ENST00000529637 LARP1BQ659C4 914 aaKnown RBP16.73■□□□□ 0.27
USP48-213ENST00000529637 KRT222Q8N1A0 295 aa16.73■□□□□ 0.27
USP48-213ENST00000529637 CABLES1Q8TDN4 633 aa16.73■□□□□ 0.27
USP48-213ENST00000529637 EDC3Q96F86 508 aaKnown RBP16.73■□□□□ 0.27
USP48-213ENST00000529637 NFAT5O94916 1531 aa16.73■□□□□ 0.27
USP48-213ENST00000529637 TATP17735 454 aaPredicted RBP16.73■□□□□ 0.27
USP48-213ENST00000529637 ELF2Q15723 593 aa16.73■□□□□ 0.27
USP48-213ENST00000529637 CHRNA2Q15822 529 aa16.73■□□□□ 0.27
USP48-213ENST00000529637 TRMT1Q9NXH9 659 aaKnown RBP16.73■□□□□ 0.27
USP48-213ENST00000529637 NAP1L2Q9ULW6 460 aaPredicted RBP16.73■□□□□ 0.27
USP48-213ENST00000529637 RGPD2P0DJD1 1756 aa16.73■□□□□ 0.27
USP48-213ENST00000529637 MARF1Q9Y4F3 1742 aaKnown RBP16.72■□□□□ 0.27
USP48-213ENST00000529637 NR1I2O75469 434 aa16.72■□□□□ 0.27
USP48-213ENST00000529637 ZNF165P49910 485 aa16.72■□□□□ 0.27
USP48-213ENST00000529637 TPCN1Q9ULQ1 816 aa16.72■□□□□ 0.27
USP48-213ENST00000529637 A0A087WWV3 80 aa16.72■□□□□ 0.27
USP48-213ENST00000529637 ATP5J2-PTCD1G3V325 749 aa16.72■□□□□ 0.27
USP48-213ENST00000529637 PTCD1O75127 700 aaKnown RBP16.72■□□□□ 0.27
USP48-213ENST00000529637 STK3Q13188 491 aa16.72■□□□□ 0.27
USP48-213ENST00000529637 NDUFB9Q9Y6M9 179 aa16.72■□□□□ 0.27
USP48-213ENST00000529637 KRT85P78386 507 aa16.72■□□□□ 0.27
USP48-213ENST00000529637 CREB3L3Q68CJ9 461 aa16.72■□□□□ 0.27
USP48-213ENST00000529637 KAZALD1Q96I82 304 aa16.72■□□□□ 0.27
USP48-213ENST00000529637 IGKV5-2P06315 115 aa16.71■□□□□ 0.27
USP48-213ENST00000529637 ZNF496Q96IT1 587 aaPredicted RBP16.71■□□□□ 0.27
USP48-213ENST00000529637 TRERF1Q96PN7 1200 aa16.71■□□□□ 0.27
USP48-213ENST00000529637 UBE3BQ7Z3V4 1068 aa16.71■□□□□ 0.27
USP48-213ENST00000529637 SYTL4Q96C24 671 aaPredicted RBP16.71■□□□□ 0.27
USP48-213ENST00000529637 DNAJC2Q99543 621 aaKnown RBP16.71■□□□□ 0.27
USP48-213ENST00000529637 ZNF446Q9NWS9 450 aa16.71■□□□□ 0.27
USP48-213ENST00000529637 ERBB3P21860 1342 aa16.7■□□□□ 0.26
USP48-213ENST00000529637 A0A0D9SFI3 127 aa16.7■□□□□ 0.26
USP48-213ENST00000529637 LRRC8AQ8IWT6 810 aa16.7■□□□□ 0.26
USP48-213ENST00000529637 ZNF397Q8NF99 534 aaPredicted RBP16.7■□□□□ 0.26
USP48-213ENST00000529637 TDRD7Q8NHU6 1098 aaKnown RBP16.7■□□□□ 0.26
USP48-213ENST00000529637 VPS53Q5VIR6 699 aa16.7■□□□□ 0.26
USP48-213ENST00000529637 USP42Q9H9J4 1324 aaKnown RBP16.7■□□□□ 0.26
USP48-213ENST00000529637 HIP1O00291 1037 aa16.7■□□□□ 0.26
USP48-213ENST00000529637 EPHA10Q5JZY3 1008 aa16.7■□□□□ 0.26
USP48-213ENST00000529637 BLOC1S2Q6QNY1 142 aa16.7■□□□□ 0.26
USP48-213ENST00000529637 USP16Q9Y5T5 823 aa16.7■□□□□ 0.26
USP48-213ENST00000529637 NEURL1BA8MQ27 555 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms