RNA–Protein interactions for RNA: ENST00000523483.5

SDCBP-212, Transcript of syndecan binding protein, humanhuman

TSL 2 BASIC

Gene SDCBP, Length 3,589 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-212ENST00000523483 CCDC125Q86Z20 511 aa11.55□□□□□ -0.56
SDCBP-212ENST00000523483 TTLL11Q8NHH1 800 aa11.55□□□□□ -0.56
SDCBP-212ENST00000523483 TAF1LQ8IZX4 1826 aa11.55□□□□□ -0.56
SDCBP-212ENST00000523483 C3orf67Q6ZVT6 689 aa11.55□□□□□ -0.56
SDCBP-212ENST00000523483 OTUD7AQ8TE49 926 aaPredicted RBP11.55□□□□□ -0.56
SDCBP-212ENST00000523483 NUP98P52948 1817 aa11.55□□□□□ -0.56
SDCBP-212ENST00000523483 CARMIL3Q8ND23 1372 aa11.54□□□□□ -0.56
SDCBP-212ENST00000523483 ANKRD18BA2A2Z9 1011 aa11.54□□□□□ -0.56
SDCBP-212ENST00000523483 DDR1Q08345 913 aa11.54□□□□□ -0.56
SDCBP-212ENST00000523483 LDHAL6AQ6ZMR3 332 aa11.54□□□□□ -0.56
SDCBP-212ENST00000523483 PUS3Q9BZE2 481 aaKnown RBP11.54□□□□□ -0.56
SDCBP-212ENST00000523483 ATF5Q9Y2D1 282 aaPredicted RBP11.54□□□□□ -0.56
SDCBP-212ENST00000523483 PARP3Q9Y6F1 533 aa11.54□□□□□ -0.56
SDCBP-212ENST00000523483 ST5P78524 1137 aa11.54□□□□□ -0.56
SDCBP-212ENST00000523483 CCDC152Q4G0S7 254 aa11.54□□□□□ -0.56
SDCBP-212ENST00000523483 MPHOSPH8Q99549 860 aa11.54□□□□□ -0.56
SDCBP-212ENST00000523483 ABCC12Q96J65 1359 aa11.54□□□□□ -0.56
SDCBP-212ENST00000523483 TNS1Q9HBL0 1735 aaKnown RBP11.54□□□□□ -0.56
SDCBP-212ENST00000523483 LRRC24Q50LG9 513 aa11.54□□□□□ -0.56
SDCBP-212ENST00000523483 HELBQ8NG08 1087 aaPredicted RBP11.54□□□□□ -0.56
SDCBP-212ENST00000523483 NUCB1Q02818 461 aa11.53□□□□□ -0.56
SDCBP-212ENST00000523483 PTPN12Q05209 780 aaKnown RBP11.53□□□□□ -0.56
SDCBP-212ENST00000523483 PRR5LQ6MZQ0 368 aa11.53□□□□□ -0.56
SDCBP-212ENST00000523483 RHPN1Q8TCX5 695 aa11.53□□□□□ -0.56
SDCBP-212ENST00000523483 NEUROD6Q96NK8 337 aa11.53□□□□□ -0.56
SDCBP-212ENST00000523483 HSP90B1P14625 803 aaKnown RBP11.53□□□□□ -0.56
SDCBP-212ENST00000523483 POLA2Q14181 598 aa11.53□□□□□ -0.56
SDCBP-212ENST00000523483 RABL6Q3YEC7 729 aaPredicted RBP11.53□□□□□ -0.56
SDCBP-212ENST00000523483 NUP188Q5SRE5 1749 aa11.53□□□□□ -0.56
SDCBP-212ENST00000523483 MTX1Q13505 466 aa11.53□□□□□ -0.56
SDCBP-212ENST00000523483 HSP90AB4PQ58FF6 505 aa11.53□□□□□ -0.56
SDCBP-212ENST00000523483 CCDC8Q9H0W5 538 aaPredicted RBP11.53□□□□□ -0.56
SDCBP-212ENST00000523483 CDHR2Q9BYE9 1310 aa11.52□□□□□ -0.56
SDCBP-212ENST00000523483 CLASRPQ8N2M8 674 aaKnown RBP11.52□□□□□ -0.56
SDCBP-212ENST00000523483 KIF1BPQ96EK5 621 aa11.52□□□□□ -0.56
SDCBP-212ENST00000523483 AACSQ86V21 672 aa11.52□□□□□ -0.57
SDCBP-212ENST00000523483 IFIT2P09913 472 aaKnown RBP11.52□□□□□ -0.57
SDCBP-212ENST00000523483 PDE4AP27815 886 aa11.52□□□□□ -0.57
SDCBP-212ENST00000523483 TFCP2Q12800 502 aa11.52□□□□□ -0.57
SDCBP-212ENST00000523483 METTL24Q5JXM2 366 aa11.52□□□□□ -0.57
SDCBP-212ENST00000523483 RPGRQ92834 1020 aaKnown RBP11.52□□□□□ -0.57
SDCBP-212ENST00000523483 IGHMBP2P38935 993 aaKnown RBP11.51□□□□□ -0.57
SDCBP-212ENST00000523483 POLRMTO00411 1230 aaKnown RBP11.51□□□□□ -0.57
SDCBP-212ENST00000523483 DDX46Q7L014 1031 aaKnown RBP11.51□□□□□ -0.57
SDCBP-212ENST00000523483 ZNF219Q9P2Y4 722 aaPredicted RBP11.51□□□□□ -0.57
SDCBP-212ENST00000523483 IBTKQ9P2D0 1353 aaPredicted RBP11.51□□□□□ -0.57
SDCBP-212ENST00000523483 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.51□□□□□ -0.57
SDCBP-212ENST00000523483 UBR3Q6ZT12 1888 aa11.5□□□□□ -0.57
SDCBP-212ENST00000523483 SNAP23O00161 211 aa11.5□□□□□ -0.57
SDCBP-212ENST00000523483 TAF5LO75529 589 aa11.5□□□□□ -0.57
SDCBP-212ENST00000523483 RFX5P48382 616 aaPredicted RBP11.5□□□□□ -0.57
SDCBP-212ENST00000523483 CEP126Q9P2H0 1117 aa11.5□□□□□ -0.57
SDCBP-212ENST00000523483 ZNF831Q5JPB2 1677 aa11.5□□□□□ -0.57
SDCBP-212ENST00000523483 EYA2O00167 538 aa11.5□□□□□ -0.57
SDCBP-212ENST00000523483 SASH1O94885 1247 aa11.5□□□□□ -0.57
SDCBP-212ENST00000523483 TM4SF1P30408 202 aa11.5□□□□□ -0.57
SDCBP-212ENST00000523483 GORABQ5T7V8 394 aa11.5□□□□□ -0.57
SDCBP-212ENST00000523483 ERC1Q8IUD2 1116 aa11.5□□□□□ -0.57
SDCBP-212ENST00000523483 ZNF622Q969S3 477 aaKnown RBP eCLIP11.5□□□□□ -0.57
SDCBP-212ENST00000523483 COPRSQ9NQ92 184 aa11.5□□□□□ -0.57
SDCBP-212ENST00000523483 RAB11FIP3O75154 756 aa11.49□□□□□ -0.57
SDCBP-212ENST00000523483 MAP4K4O95819 1239 aaPredicted RBP11.49□□□□□ -0.57
SDCBP-212ENST00000523483 CSF1RP07333 972 aa11.49□□□□□ -0.57
SDCBP-212ENST00000523483 TIMM10P62072 90 aa11.49□□□□□ -0.57
SDCBP-212ENST00000523483 ANKRD18AQ8IVF6 992 aa11.49□□□□□ -0.57
SDCBP-212ENST00000523483 CELF1Q92879 486 aaKnown RBP11.49□□□□□ -0.57
SDCBP-212ENST00000523483 CDC5LQ99459 802 aaKnown RBP11.49□□□□□ -0.57
SDCBP-212ENST00000523483 PLA2G12BQ9BX93 195 aa11.49□□□□□ -0.57
SDCBP-212ENST00000523483 RREB1Q92766 1687 aa11.49□□□□□ -0.57
SDCBP-212ENST00000523483 C4AP0C0L4 1744 aa11.49□□□□□ -0.57
SDCBP-212ENST00000523483 CICQ96RK0 1608 aaPredicted RBP11.48□□□□□ -0.57
SDCBP-212ENST00000523483 TRIM6-TRIM34B2RNG4 842 aa11.48□□□□□ -0.57
SDCBP-212ENST00000523483 IL15P40933 162 aaPredicted RBP11.48□□□□□ -0.57
SDCBP-212ENST00000523483 TLR7Q9NYK1 1049 aaKnown RBP11.48□□□□□ -0.57
SDCBP-212ENST00000523483 MX1P20591 662 aa11.48□□□□□ -0.57
SDCBP-212ENST00000523483 SLC51AQ86UW1 340 aa11.48□□□□□ -0.57
SDCBP-212ENST00000523483 EAF2Q96CJ1 260 aaPredicted RBP11.48□□□□□ -0.57
SDCBP-212ENST00000523483 NOP58Q9Y2X3 529 aaKnown RBP11.48□□□□□ -0.57
SDCBP-212ENST00000523483 KCNJ4P48050 445 aa11.47□□□□□ -0.57
SDCBP-212ENST00000523483 ATG9AQ7Z3C6 839 aa11.47□□□□□ -0.57
SDCBP-212ENST00000523483 RILPL2Q969X0 211 aa11.47□□□□□ -0.57
SDCBP-212ENST00000523483 CHRNA5P30532 468 aa11.47□□□□□ -0.57
SDCBP-212ENST00000523483 RPS8P62241 208 aaKnown RBP11.47□□□□□ -0.57
SDCBP-212ENST00000523483 SCN7AQ01118 1682 aa11.46□□□□□ -0.57
SDCBP-212ENST00000523483 ANKRD36CQ5JPF3 1778 aa11.46□□□□□ -0.57
SDCBP-212ENST00000523483 PLEKHM2Q8IWE5 1019 aa11.46□□□□□ -0.57
SDCBP-212ENST00000523483 ANKIB1Q9P2G1 1089 aa11.46□□□□□ -0.57
SDCBP-212ENST00000523483 NDUFB9Q9Y6M9 179 aa11.46□□□□□ -0.57
SDCBP-212ENST00000523483 POLD1P28340 1107 aa11.46□□□□□ -0.58
SDCBP-212ENST00000523483 TNNI3KQ59H18 835 aa11.46□□□□□ -0.58
SDCBP-212ENST00000523483 DBNDD2Q9BQY9 259 aa11.46□□□□□ -0.58
SDCBP-212ENST00000523483 FPGT-TNNI3KV9GXZ4 949 aa11.46□□□□□ -0.58
SDCBP-212ENST00000523483 N4BP2Q86UW6 1770 aaPredicted RBP11.46□□□□□ -0.58
SDCBP-212ENST00000523483 A0A1B0GUL7 405 aa11.46□□□□□ -0.58
SDCBP-212ENST00000523483 RGL2O15211 777 aa11.46□□□□□ -0.58
SDCBP-212ENST00000523483 PDE1AP54750 535 aa11.46□□□□□ -0.58
SDCBP-212ENST00000523483 SF3B3Q15393 1217 aaKnown RBP11.46□□□□□ -0.58
SDCBP-212ENST00000523483 SLC10A5Q5PT55 438 aa11.46□□□□□ -0.58
SDCBP-212ENST00000523483 GPATCH3Q96I76 525 aa11.45□□□□□ -0.58
SDCBP-212ENST00000523483 BOLA2Q9H3K6 86 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms