RNA–Protein interactions for RNA: ENST00000517525.1

PVT1-204, Transcript of Pvt1 oncogene, human

TSL 3

Gene PVT1, Length 392 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-204	ENST00000517525	VEGFA	P15692	232 aa	Predicted RBP	31.51	■■■□□ 2.63
PVT1-204	ENST00000517525	ZNF428	Q96B54	188 aa		31.5	■■■□□ 2.63
PVT1-204	ENST00000517525	NEURL1B	A8MQ27	555 aa		31.49	■■■□□ 2.63
PVT1-204	ENST00000517525	FZD9	O00144	591 aa		31.49	■■■□□ 2.63
PVT1-204	ENST00000517525	POTEC	B2RU33	542 aa		31.48	■■■□□ 2.63
PVT1-204	ENST00000517525	PDE8A	O60658	829 aa		31.48	■■■□□ 2.63
PVT1-204	ENST00000517525	FKBP5	Q13451	457 aa	Predicted RBP	31.48	■■■□□ 2.63
PVT1-204	ENST00000517525	RTL5	Q5HYW3	569 aa	Predicted RBP	31.48	■■■□□ 2.63
PVT1-204	ENST00000517525	DNAAF4	Q8WXU2	420 aa		31.48	■■■□□ 2.63
PVT1-204	ENST00000517525	WDR90	Q96KV7	1748 aa		31.48	■■■□□ 2.63
PVT1-204	ENST00000517525	SLFN5	Q08AF3	891 aa		31.47	■■■□□ 2.63
PVT1-204	ENST00000517525	SLC51A	Q86UW1	340 aa		31.46	■■■□□ 2.63
PVT1-204	ENST00000517525	C16orf71	Q8IYS4	520 aa	Predicted RBP	31.46	■■■□□ 2.63
PVT1-204	ENST00000517525	SUPT20H	Q8NEM7	779 aa		31.46	■■■□□ 2.63
PVT1-204	ENST00000517525	L3MBTL3	Q96JM7	780 aa	Predicted RBP	31.46	■■■□□ 2.63
PVT1-204	ENST00000517525		H7C1W4	665 aa		31.45	■■■□□ 2.63
PVT1-204	ENST00000517525	LINS1	Q8NG48	757 aa		31.45	■■■□□ 2.63
PVT1-204	ENST00000517525	JDP2	Q8WYK2	163 aa		31.45	■■■□□ 2.63
PVT1-204	ENST00000517525	FSTL1	Q12841	308 aa		31.44	■■■□□ 2.62
PVT1-204	ENST00000517525	CWF19L2	Q2TBE0	894 aa	Known RBP	31.44	■■■□□ 2.62
PVT1-204	ENST00000517525	CCDC152	Q4G0S7	254 aa		31.44	■■■□□ 2.62
PVT1-204	ENST00000517525	TRMT2A	Q8IZ69	625 aa	Known RBP	31.44	■■■□□ 2.62
PVT1-204	ENST00000517525	MPND	Q8N594	471 aa		31.44	■■■□□ 2.62
PVT1-204	ENST00000517525	CELF1	Q92879	486 aa	Known RBP	31.44	■■■□□ 2.62
PVT1-204	ENST00000517525	DDN	O94850	711 aa	Predicted RBP	31.43	■■■□□ 2.62
PVT1-204	ENST00000517525	HSPA6	P17066	643 aa		31.43	■■■□□ 2.62
PVT1-204	ENST00000517525	RPS8	P62241	208 aa	Known RBP	31.43	■■■□□ 2.62
PVT1-204	ENST00000517525	GCKR	Q14397	625 aa		31.43	■■■□□ 2.62
PVT1-204	ENST00000517525	DIEXF	Q68CQ4	756 aa	Known RBP	31.43	■■■□□ 2.62
PVT1-204	ENST00000517525	DPP8	Q6V1X1	898 aa	Predicted RBP	31.42	■■■□□ 2.62
PVT1-204	ENST00000517525	LARGE2	Q8N3Y3	721 aa		31.41	■■■□□ 2.62
PVT1-204	ENST00000517525	PLA2G12B	Q9BX93	195 aa		31.41	■■■□□ 2.62
PVT1-204	ENST00000517525	JARID2	Q92833	1246 aa	Predicted RBP	31.4	■■■□□ 2.62
PVT1-204	ENST00000517525	ZNF541	Q9H0D2	1346 aa		31.4	■■■□□ 2.62
PVT1-204	ENST00000517525	LRRC37A	A6NMS7	1700 aa		31.39	■■■□□ 2.62
PVT1-204	ENST00000517525	RTL9	Q8NET4	1388 aa		31.39	■■■□□ 2.62
PVT1-204	ENST00000517525	COL4A5	P29400	1685 aa		31.38	■■■□□ 2.61
PVT1-204	ENST00000517525	CASP7	P55210	303 aa		31.38	■■■□□ 2.61
PVT1-204	ENST00000517525	CTSW	P56202	376 aa		31.38	■■■□□ 2.61
PVT1-204	ENST00000517525	GPC2	Q8N158	579 aa		31.38	■■■□□ 2.61
PVT1-204	ENST00000517525	IQCA1L	A6NCM1	817 aa		31.37	■■■□□ 2.61
PVT1-204	ENST00000517525	PPIP5K2	O43314	1243 aa		31.37	■■■□□ 2.61
PVT1-204	ENST00000517525	KIAA2012	Q0VF49	1180 aa		31.37	■■■□□ 2.61
PVT1-204	ENST00000517525	BEND3	Q5T5X7	828 aa		31.37	■■■□□ 2.61
PVT1-204	ENST00000517525	SMC1B	Q8NDV3	1235 aa		31.37	■■■□□ 2.61
PVT1-204	ENST00000517525	TTLL11	Q8NHH1	800 aa		31.37	■■■□□ 2.61
PVT1-204	ENST00000517525	SEC31B	Q9NQW1	1179 aa		31.37	■■■□□ 2.61
PVT1-204	ENST00000517525	EIF6	P56537	245 aa	Known RBP	31.36	■■■□□ 2.61
PVT1-204	ENST00000517525	NIM1K	Q8IY84	436 aa		31.36	■■■□□ 2.61
PVT1-204	ENST00000517525	UBE3B	Q7Z3V4	1068 aa		31.35	■■■□□ 2.61
PVT1-204	ENST00000517525	MIER1	Q8N108	512 aa		31.35	■■■□□ 2.61
PVT1-204	ENST00000517525	CDCA7L	Q96GN5	454 aa		31.35	■■■□□ 2.61
PVT1-204	ENST00000517525	TAF1	P21675	1872 aa		31.35	■■■□□ 2.61
PVT1-204	ENST00000517525		F6X3S4	739 aa		31.34	■■■□□ 2.61
PVT1-204	ENST00000517525	AOC3	Q16853	763 aa		31.34	■■■□□ 2.61
PVT1-204	ENST00000517525	MRPL50	Q8N5N7	158 aa	Known RBP	31.34	■■■□□ 2.61
PVT1-204	ENST00000517525	PODXL2	Q9NZ53	605 aa		31.34	■■■□□ 2.61
PVT1-204	ENST00000517525	COL4A1	P02462	1669 aa		31.33	■■■□□ 2.61
PVT1-204	ENST00000517525	CT47B1	P0C2W7	299 aa	Predicted RBP	31.33	■■■□□ 2.61
PVT1-204	ENST00000517525	ZNRF3	Q9ULT6	936 aa		31.33	■■■□□ 2.61
PVT1-204	ENST00000517525	DUOX1	Q9NRD9	1551 aa		31.33	■■■□□ 2.61
PVT1-204	ENST00000517525	NSFL1C	Q9UNZ2	370 aa	Known RBP	31.32	■■■□□ 2.6
PVT1-204	ENST00000517525	CSF1R	P07333	972 aa		31.31	■■■□□ 2.6
PVT1-204	ENST00000517525	GPSM2	P81274	684 aa		31.31	■■■□□ 2.6
PVT1-204	ENST00000517525	CDC5L	Q99459	802 aa	Known RBP	31.31	■■■□□ 2.6
PVT1-204	ENST00000517525	TAF1D	Q9H5J8	278 aa	Predicted RBP	31.31	■■■□□ 2.6
PVT1-204	ENST00000517525	CEP350	Q5VT06	3117 aa		31.31	■■■□□ 2.6
PVT1-204	ENST00000517525	SCN4A	P35499	1836 aa		31.31	■■■□□ 2.6
PVT1-204	ENST00000517525	ALDH1L1	O75891	902 aa		31.3	■■■□□ 2.6
PVT1-204	ENST00000517525	ALDH1L2	Q3SY69	923 aa		31.3	■■■□□ 2.6
PVT1-204	ENST00000517525	ANKRD18A	Q8IVF6	992 aa		31.3	■■■□□ 2.6
PVT1-204	ENST00000517525	APLP1	P51693	650 aa		31.29	■■■□□ 2.6
PVT1-204	ENST00000517525	SSH1	Q8WYL5	1049 aa		31.29	■■■□□ 2.6
PVT1-204	ENST00000517525	POLL	Q9UGP5	575 aa		31.29	■■■□□ 2.6
PVT1-204	ENST00000517525	HACL1	Q9UJ83	578 aa		31.29	■■■□□ 2.6
PVT1-204	ENST00000517525	PTPRC	P08575	1304 aa		31.28	■■■□□ 2.6
PVT1-204	ENST00000517525	GREM2	Q9H772	168 aa		31.28	■■■□□ 2.6
PVT1-204	ENST00000517525	LTBP1	Q14766	1721 aa		31.27	■■■□□ 2.6
PVT1-204	ENST00000517525	WASHC4	Q2M389	1173 aa		31.27	■■■□□ 2.6
PVT1-204	ENST00000517525	TBC1D16	Q8TBP0	767 aa		31.27	■■■□□ 2.6
PVT1-204	ENST00000517525	CCDC85A	Q96PX6	553 aa	Predicted RBP	31.27	■■■□□ 2.6
PVT1-204	ENST00000517525	BSDC1	Q9NW68	430 aa	Predicted RBP	31.27	■■■□□ 2.6
PVT1-204	ENST00000517525	EYA3	Q99504	573 aa		31.26	■■■□□ 2.59
PVT1-204	ENST00000517525	CXCL9	Q07325	125 aa		31.25	■■■□□ 2.59
PVT1-204	ENST00000517525	SRCIN1	Q9C0H9	1055 aa		31.25	■■■□□ 2.59
PVT1-204	ENST00000517525	GRM8	O00222	908 aa		31.24	■■■□□ 2.59
PVT1-204	ENST00000517525	MYH3	P11055	1940 aa		31.24	■■■□□ 2.59
PVT1-204	ENST00000517525	C6orf229	H3BNL8	230 aa		31.23	■■■□□ 2.59
PVT1-204	ENST00000517525	EPHX2	P34913	555 aa		31.23	■■■□□ 2.59
PVT1-204	ENST00000517525	BRPF1	P55201	1214 aa	Predicted RBP	31.23	■■■□□ 2.59
PVT1-204	ENST00000517525	CHADL	Q6NUI6	762 aa		31.23	■■■□□ 2.59
PVT1-204	ENST00000517525	PNMA8A	Q86V59	439 aa	Predicted RBP	31.23	■■■□□ 2.59
PVT1-204	ENST00000517525	LDHD	Q86WU2	507 aa		31.23	■■■□□ 2.59
PVT1-204	ENST00000517525	XDH	P47989	1333 aa		31.23	■■■□□ 2.59
PVT1-204	ENST00000517525	SCNN1D	P51172	638 aa		31.22	■■■□□ 2.59
PVT1-204	ENST00000517525	FOXO4	P98177	505 aa		31.22	■■■□□ 2.59
PVT1-204	ENST00000517525	GGA1	Q9UJY5	639 aa		31.22	■■■□□ 2.59
PVT1-204	ENST00000517525	GJA3	Q9Y6H8	435 aa		31.22	■■■□□ 2.59
PVT1-204	ENST00000517525	TNIP1	Q15025	636 aa		31.21	■■■□□ 2.59
PVT1-204	ENST00000517525	CIAPIN1	Q6FI81	312 aa		31.21	■■■□□ 2.59

Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms