RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 KCNA3P22001 575 aa12.39□□□□□ -0.43
TOPBP1-209ENST00000513818 FTSJ3Q8IY81 847 aaKnown RBP12.39□□□□□ -0.43
TOPBP1-209ENST00000513818 ARHGAP45Q92619 1136 aa12.39□□□□□ -0.43
TOPBP1-209ENST00000513818 FBXO3Q9UK99 471 aa12.39□□□□□ -0.43
TOPBP1-209ENST00000513818 H7C1W4 665 aa12.38□□□□□ -0.43
TOPBP1-209ENST00000513818 NBPF7P0C2Y1 421 aaPredicted RBP12.38□□□□□ -0.43
TOPBP1-209ENST00000513818 PDE6BP35913 854 aa12.38□□□□□ -0.43
TOPBP1-209ENST00000513818 CCT4P50991 539 aaKnown RBP12.38□□□□□ -0.43
TOPBP1-209ENST00000513818 EPHA10Q5JZY3 1008 aa12.38□□□□□ -0.43
TOPBP1-209ENST00000513818 DZIP1LQ8IYY4 767 aaKnown RBP12.38□□□□□ -0.43
TOPBP1-209ENST00000513818 ZNF622Q969S3 477 aaKnown RBP eCLIP12.38□□□□□ -0.43
TOPBP1-209ENST00000513818 SUCLG2Q96I99 432 aa12.38□□□□□ -0.43
TOPBP1-209ENST00000513818 MEIS3Q99687 375 aa12.38□□□□□ -0.43
TOPBP1-209ENST00000513818 C9orf78Q9NZ63 289 aaPredicted RBP12.38□□□□□ -0.43
TOPBP1-209ENST00000513818 CDHR2Q9BYE9 1310 aa12.37□□□□□ -0.43
TOPBP1-209ENST00000513818 SLX4Q8IY92 1834 aa12.37□□□□□ -0.43
TOPBP1-209ENST00000513818 H0YIN7 160 aa12.37□□□□□ -0.43
TOPBP1-209ENST00000513818 SRGNP10124 158 aa12.37□□□□□ -0.43
TOPBP1-209ENST00000513818 RRP1P56182 461 aaKnown RBP12.37□□□□□ -0.43
TOPBP1-209ENST00000513818 TGFB2P61812 414 aa12.37□□□□□ -0.43
TOPBP1-209ENST00000513818 SLC10A5Q5PT55 438 aa12.37□□□□□ -0.43
TOPBP1-209ENST00000513818 INTS3Q68E01 1043 aaKnown RBP12.37□□□□□ -0.43
TOPBP1-209ENST00000513818 ITPRIPQ8IWB1 547 aa12.37□□□□□ -0.43
TOPBP1-209ENST00000513818 RPGRQ92834 1020 aaKnown RBP12.37□□□□□ -0.43
TOPBP1-209ENST00000513818 NLRP3Q96P20 1036 aa12.37□□□□□ -0.43
TOPBP1-209ENST00000513818 YBX3P16989 372 aaKnown RBP eCLIP12.36□□□□□ -0.43
TOPBP1-209ENST00000513818 CTSWP56202 376 aa12.36□□□□□ -0.43
TOPBP1-209ENST00000513818 USP44Q9H0E7 712 aa12.36□□□□□ -0.43
TOPBP1-209ENST00000513818 BCS1LQ9Y276 419 aa12.36□□□□□ -0.43
TOPBP1-209ENST00000513818 GTF3C3Q9Y5Q9 886 aa12.36□□□□□ -0.43
TOPBP1-209ENST00000513818 KLRG2A4D1S0 409 aaPredicted RBP12.35□□□□□ -0.43
TOPBP1-209ENST00000513818 PDE8AO60658 829 aa12.35□□□□□ -0.43
TOPBP1-209ENST00000513818 FAM161AQ3B820 660 aa12.35□□□□□ -0.43
TOPBP1-209ENST00000513818 CRY2Q49AN0 593 aa12.35□□□□□ -0.43
TOPBP1-209ENST00000513818 OLFM4Q6UX06 510 aa12.35□□□□□ -0.43
TOPBP1-209ENST00000513818 MASTLQ96GX5 879 aa12.35□□□□□ -0.43
TOPBP1-209ENST00000513818 KAZALD1Q96I82 304 aa12.35□□□□□ -0.43
TOPBP1-209ENST00000513818 GREM2Q9H772 168 aa12.35□□□□□ -0.43
TOPBP1-209ENST00000513818 C1orf115Q9H7X2 142 aa12.35□□□□□ -0.43
TOPBP1-209ENST00000513818 SEC31BQ9NQW1 1179 aa12.35□□□□□ -0.43
TOPBP1-209ENST00000513818 COG6Q9Y2V7 657 aa12.35□□□□□ -0.43
TOPBP1-209ENST00000513818 CHMP3Q9Y3E7 222 aa12.35□□□□□ -0.43
TOPBP1-209ENST00000513818 UTRNP46939 3433 aa12.35□□□□□ -0.43
TOPBP1-209ENST00000513818 UTYO14607 1347 aa12.35□□□□□ -0.43
TOPBP1-209ENST00000513818 ARFGEF1Q9Y6D6 1849 aa12.34□□□□□ -0.43
TOPBP1-209ENST00000513818 UBTFL1P0CB47 393 aaPredicted RBP12.34□□□□□ -0.43
TOPBP1-209ENST00000513818 NPR1P16066 1061 aa12.34□□□□□ -0.43
TOPBP1-209ENST00000513818 FOXO4P98177 505 aa12.34□□□□□ -0.43
TOPBP1-209ENST00000513818 PRPF40BQ6NWY9 871 aaKnown RBP12.34□□□□□ -0.43
TOPBP1-209ENST00000513818 HOMEZQ8IX15 550 aa12.34□□□□□ -0.43
TOPBP1-209ENST00000513818 BICC1Q9H694 974 aaKnown RBP12.34□□□□□ -0.43
TOPBP1-209ENST00000513818 PIM2Q9P1W9 311 aa12.34□□□□□ -0.43
TOPBP1-209ENST00000513818 LRRFIP2Q9Y608 721 aaKnown RBP12.34□□□□□ -0.43
TOPBP1-209ENST00000513818 SF3B3Q15393 1217 aaKnown RBP12.33□□□□□ -0.44
TOPBP1-209ENST00000513818 DALRD3Q5D0E6 543 aaKnown RBP12.33□□□□□ -0.44
TOPBP1-209ENST00000513818 STYK1Q6J9G0 422 aa12.33□□□□□ -0.44
TOPBP1-209ENST00000513818 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.33□□□□□ -0.44
TOPBP1-209ENST00000513818 TTLL11Q8NHH1 800 aa12.33□□□□□ -0.44
TOPBP1-209ENST00000513818 CELF1Q92879 486 aaKnown RBP12.33□□□□□ -0.44
TOPBP1-209ENST00000513818 SUPT16HQ9Y5B9 1047 aaKnown RBP12.33□□□□□ -0.44
TOPBP1-209ENST00000513818 LRRC37AA6NMS7 1700 aa12.32□□□□□ -0.44
TOPBP1-209ENST00000513818 PPEF1O14829 653 aaPredicted RBP12.32□□□□□ -0.44
TOPBP1-209ENST00000513818 C21orf2O43822 256 aa12.32□□□□□ -0.44
TOPBP1-209ENST00000513818 MVPQ14764 893 aaKnown RBP12.32□□□□□ -0.44
TOPBP1-209ENST00000513818 GPR162Q16538 588 aa12.32□□□□□ -0.44
TOPBP1-209ENST00000513818 CCDC152Q4G0S7 254 aa12.32□□□□□ -0.44
TOPBP1-209ENST00000513818 LMBR1LQ6UX01 489 aa12.32□□□□□ -0.44
TOPBP1-209ENST00000513818 DDX46Q7L014 1031 aaKnown RBP12.32□□□□□ -0.44
TOPBP1-209ENST00000513818 TTLL6Q8N841 843 aa12.32□□□□□ -0.44
TOPBP1-209ENST00000513818 ANKRD44Q8N8A2 993 aa12.32□□□□□ -0.44
TOPBP1-209ENST00000513818 RBM17Q96I25 401 aaKnown RBP12.32□□□□□ -0.44
TOPBP1-209ENST00000513818 PLA2G12BQ9BX93 195 aa12.32□□□□□ -0.44
TOPBP1-209ENST00000513818 HOXA10P31260 410 aaPredicted RBP12.31□□□□□ -0.44
TOPBP1-209ENST00000513818 IRX6P78412 446 aaPredicted RBP12.31□□□□□ -0.44
TOPBP1-209ENST00000513818 GRAPQ13588 217 aa12.31□□□□□ -0.44
TOPBP1-209ENST00000513818 GRAPLQ8TC17 118 aaPredicted RBP12.31□□□□□ -0.44
TOPBP1-209ENST00000513818 CNKSR1Q969H4 720 aa12.31□□□□□ -0.44
TOPBP1-209ENST00000513818 PDZRN3Q9UPQ7 1066 aa12.31□□□□□ -0.44
TOPBP1-209ENST00000513818 A0A1B0GUL6 1792 aa12.3□□□□□ -0.44
TOPBP1-209ENST00000513818 HSP90B1P14625 803 aaKnown RBP12.3□□□□□ -0.44
TOPBP1-209ENST00000513818 ITGA6P23229 1130 aa12.3□□□□□ -0.44
TOPBP1-209ENST00000513818 ZNF594Q96JF6 807 aaPredicted RBP12.3□□□□□ -0.44
TOPBP1-209ENST00000513818 CRAMP1Q96RY5 1269 aa12.3□□□□□ -0.44
TOPBP1-209ENST00000513818 CRBNQ96SW2 442 aa12.3□□□□□ -0.44
TOPBP1-209ENST00000513818 RTL9Q8NET4 1388 aa12.3□□□□□ -0.44
TOPBP1-209ENST00000513818 ZBTB7BO15156 539 aaPredicted RBP12.29□□□□□ -0.44
TOPBP1-209ENST00000513818 CSF1RP07333 972 aa12.29□□□□□ -0.44
TOPBP1-209ENST00000513818 GNAI3P08754 354 aa12.29□□□□□ -0.44
TOPBP1-209ENST00000513818 MS4A1P11836 297 aa12.29□□□□□ -0.44
TOPBP1-209ENST00000513818 RASSF7Q02833 373 aa12.29□□□□□ -0.44
TOPBP1-209ENST00000513818 PDE3AQ14432 1141 aa12.29□□□□□ -0.44
TOPBP1-209ENST00000513818 RABL6Q3YEC7 729 aaPredicted RBP12.29□□□□□ -0.44
TOPBP1-209ENST00000513818 KLHDC4Q8TBB5 520 aa12.29□□□□□ -0.44
TOPBP1-209ENST00000513818 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.29□□□□□ -0.44
TOPBP1-209ENST00000513818 DUOX1Q9NRD9 1551 aa12.29□□□□□ -0.44
TOPBP1-209ENST00000513818 FER1L6Q2WGJ9 1857 aa12.28□□□□□ -0.44
TOPBP1-209ENST00000513818 GNAI2P04899 355 aa12.28□□□□□ -0.44
TOPBP1-209ENST00000513818 ALDH1B1P30837 517 aa12.28□□□□□ -0.44
TOPBP1-209ENST00000513818 LTBP1Q14766 1721 aa12.28□□□□□ -0.44
TOPBP1-209ENST00000513818 SNED1Q8TER0 1413 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms