RNA–Protein interactions for RNA: ENST00000494646.1

MSH5-218, Transcript of mutS homolog 5, humanhuman

TSL 4

Gene MSH5, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-218ENST00000494646 IRS4O14654 1257 aaPredicted RBP12.38□□□□□ -0.43
MSH5-218ENST00000494646 PPIP5K2O43314 1243 aa12.38□□□□□ -0.43
MSH5-218ENST00000494646 GRAPQ13588 217 aa12.38□□□□□ -0.43
MSH5-218ENST00000494646 AOC3Q16853 763 aa12.38□□□□□ -0.43
MSH5-218ENST00000494646 GRIPAP1Q4V328 841 aa12.38□□□□□ -0.43
MSH5-218ENST00000494646 DPP8Q6V1X1 898 aaPredicted RBP12.38□□□□□ -0.43
MSH5-218ENST00000494646 FAM9BQ8IZU0 186 aa12.38□□□□□ -0.43
MSH5-218ENST00000494646 MPNDQ8N594 471 aa12.38□□□□□ -0.43
MSH5-218ENST00000494646 GRAPLQ8TC17 118 aaPredicted RBP12.38□□□□□ -0.43
MSH5-218ENST00000494646 KLRG1Q96E93 195 aa12.38□□□□□ -0.43
MSH5-218ENST00000494646 L3MBTL3Q96JM7 780 aaPredicted RBP12.38□□□□□ -0.43
MSH5-218ENST00000494646 EPHX2P34913 555 aa12.37□□□□□ -0.43
MSH5-218ENST00000494646 TRIM28Q13263 835 aaKnown RBP12.37□□□□□ -0.43
MSH5-218ENST00000494646 CCDC27Q2M243 656 aa12.37□□□□□ -0.43
MSH5-218ENST00000494646 NIM1KQ8IY84 436 aa12.37□□□□□ -0.43
MSH5-218ENST00000494646 GPC2Q8N158 579 aa12.37□□□□□ -0.43
MSH5-218ENST00000494646 CELF1Q92879 486 aaKnown RBP12.37□□□□□ -0.43
MSH5-218ENST00000494646 SF3B3Q15393 1217 aaKnown RBP12.36□□□□□ -0.43
MSH5-218ENST00000494646 TWISTNBQ3B726 338 aaPredicted RBP12.36□□□□□ -0.43
MSH5-218ENST00000494646 G2E3Q7L622 706 aa12.36□□□□□ -0.43
MSH5-218ENST00000494646 CCDC85AQ96PX6 553 aaPredicted RBP12.36□□□□□ -0.43
MSH5-218ENST00000494646 MAP3K2Q9Y2U5 619 aa12.36□□□□□ -0.43
MSH5-218ENST00000494646 PI4KAP2A4QPH2 592 aa12.35□□□□□ -0.43
MSH5-218ENST00000494646 RIMBP2O15034 1052 aa12.35□□□□□ -0.43
MSH5-218ENST00000494646 DDX58O95786 925 aaKnown RBP12.35□□□□□ -0.43
MSH5-218ENST00000494646 SLC4A2P04920 1241 aa12.35□□□□□ -0.43
MSH5-218ENST00000494646 LDHDQ86WU2 507 aa12.35□□□□□ -0.43
MSH5-218ENST00000494646 PI4KAP1Q8N8J0 262 aa12.35□□□□□ -0.43
MSH5-218ENST00000494646 ZBTB38Q8NAP3 1195 aaPredicted RBP12.35□□□□□ -0.43
MSH5-218ENST00000494646 SUPT20HQ8NEM7 779 aa12.35□□□□□ -0.43
MSH5-218ENST00000494646 METTL22Q9BUU2 404 aaPredicted RBP12.35□□□□□ -0.43
MSH5-218ENST00000494646 STK31Q9BXU1 1019 aa12.35□□□□□ -0.43
MSH5-218ENST00000494646 CHMP4AQ9BY43 222 aa12.35□□□□□ -0.43
MSH5-218ENST00000494646 SEC31BQ9NQW1 1179 aa12.35□□□□□ -0.43
MSH5-218ENST00000494646 NSFL1CQ9UNZ2 370 aaKnown RBP12.35□□□□□ -0.43
MSH5-218ENST00000494646 EPS15P42566 896 aa12.34□□□□□ -0.43
MSH5-218ENST00000494646 CXCL9Q07325 125 aa12.34□□□□□ -0.43
MSH5-218ENST00000494646 MAP1SQ66K74 1059 aaPredicted RBP12.34□□□□□ -0.43
MSH5-218ENST00000494646 KSR2Q6VAB6 950 aa12.34□□□□□ -0.43
MSH5-218ENST00000494646 PNMA8AQ86V59 439 aaPredicted RBP12.34□□□□□ -0.43
MSH5-218ENST00000494646 CCDC191Q8NCU4 936 aa12.34□□□□□ -0.43
MSH5-218ENST00000494646 RTFDC1Q9BY42 306 aaPredicted RBP12.34□□□□□ -0.43
MSH5-218ENST00000494646 VPS33BQ9H267 617 aa12.34□□□□□ -0.43
MSH5-218ENST00000494646 CWC25Q9NXE8 425 aaPredicted RBP12.34□□□□□ -0.43
MSH5-218ENST00000494646 ZNRF3Q9ULT6 936 aa12.34□□□□□ -0.43
MSH5-218ENST00000494646 C6orf229H3BNL8 230 aa12.33□□□□□ -0.44
MSH5-218ENST00000494646 RAD17O75943 681 aa12.33□□□□□ -0.44
MSH5-218ENST00000494646 ITGBL1O95965 494 aaPredicted RBP12.33□□□□□ -0.44
MSH5-218ENST00000494646 PCCAP05165 728 aaPredicted RBP12.33□□□□□ -0.44
MSH5-218ENST00000494646 LMOD1P29536 600 aaPredicted RBP12.33□□□□□ -0.44
MSH5-218ENST00000494646 RPS8P62241 208 aaKnown RBP12.33□□□□□ -0.44
MSH5-218ENST00000494646 GPSM2P81274 684 aa12.33□□□□□ -0.44
MSH5-218ENST00000494646 CNTROBQ8N137 903 aa12.33□□□□□ -0.44
MSH5-218ENST00000494646 GPR101Q96P66 508 aaPredicted RBP12.33□□□□□ -0.44
MSH5-218ENST00000494646 IL16Q14005 1332 aa12.33□□□□□ -0.44
MSH5-218ENST00000494646 COL4A1P02462 1669 aa12.32□□□□□ -0.44
MSH5-218ENST00000494646 LTBP1Q14766 1721 aa12.32□□□□□ -0.44
MSH5-218ENST00000494646 PDE8AO60658 829 aa12.32□□□□□ -0.44
MSH5-218ENST00000494646 IGKV5-2P06315 115 aa12.32□□□□□ -0.44
MSH5-218ENST00000494646 SCNN1DP51172 638 aa12.32□□□□□ -0.44
MSH5-218ENST00000494646 EXOSC9Q06265 439 aaKnown RBP12.32□□□□□ -0.44
MSH5-218ENST00000494646 KIAA2012Q0VF49 1180 aa12.32□□□□□ -0.44
MSH5-218ENST00000494646 WASHC4Q2M389 1173 aa12.32□□□□□ -0.44
MSH5-218ENST00000494646 CWF19L2Q2TBE0 894 aaKnown RBP12.32□□□□□ -0.44
MSH5-218ENST00000494646 TMC4Q7Z404 712 aa12.32□□□□□ -0.44
MSH5-218ENST00000494646 WDR63Q8IWG1 891 aa12.32□□□□□ -0.44
MSH5-218ENST00000494646 SPINK5Q9NQ38 1064 aaPredicted RBP12.32□□□□□ -0.44
MSH5-218ENST00000494646 POLLQ9UGP5 575 aa12.32□□□□□ -0.44
MSH5-218ENST00000494646 MKRN1Q9UHC7 482 aaKnown RBP12.32□□□□□ -0.44
MSH5-218ENST00000494646 CACNA1FO60840 1977 aa12.31□□□□□ -0.44
MSH5-218ENST00000494646 VAMP4O75379 141 aa12.31□□□□□ -0.44
MSH5-218ENST00000494646 FMR1Q06787 632 aaKnown RBP eCLIP12.31□□□□□ -0.44
MSH5-218ENST00000494646 DOK7Q18PE1 504 aa12.31□□□□□ -0.44
MSH5-218ENST00000494646 CIAPIN1Q6FI81 312 aa12.31□□□□□ -0.44
MSH5-218ENST00000494646 JMYQ8N9B5 988 aa12.31□□□□□ -0.44
MSH5-218ENST00000494646 BCL2L13Q9BXK5 485 aa12.31□□□□□ -0.44
MSH5-218ENST00000494646 PASKQ96RG2 1323 aa12.31□□□□□ -0.44
MSH5-218ENST00000494646 FANCIQ9NVI1 1328 aa12.31□□□□□ -0.44
MSH5-218ENST00000494646 POLR2AP24928 1970 aaKnown RBP12.3□□□□□ -0.44
MSH5-218ENST00000494646 YDJCA8MPS7 323 aa12.3□□□□□ -0.44
MSH5-218ENST00000494646 HSP90B1P14625 803 aaKnown RBP12.3□□□□□ -0.44
MSH5-218ENST00000494646 GMPSP49915 693 aaPredicted RBP12.3□□□□□ -0.44
MSH5-218ENST00000494646 NEXNQ0ZGT2 675 aa12.3□□□□□ -0.44
MSH5-218ENST00000494646 CCDC152Q4G0S7 254 aa12.3□□□□□ -0.44
MSH5-218ENST00000494646 DBNDD1Q9H9R9 158 aa12.3□□□□□ -0.44
MSH5-218ENST00000494646 KCNQ5Q9NR82 932 aa12.3□□□□□ -0.44
MSH5-218ENST00000494646 CREBZFQ9NS37 354 aa12.3□□□□□ -0.44
MSH5-218ENST00000494646 NEURL1BA8MQ27 555 aa12.29□□□□□ -0.44
MSH5-218ENST00000494646 FLIIQ13045 1269 aa12.29□□□□□ -0.44
MSH5-218ENST00000494646 TNIP1Q15025 636 aa12.29□□□□□ -0.44
MSH5-218ENST00000494646 USP50Q70EL3 339 aaPredicted RBP12.29□□□□□ -0.44
MSH5-218ENST00000494646 TBC1D16Q8TBP0 767 aa12.29□□□□□ -0.44
MSH5-218ENST00000494646 GPRC5DQ9NZD1 345 aa12.29□□□□□ -0.44
MSH5-218ENST00000494646 ANKIB1Q9P2G1 1089 aa12.29□□□□□ -0.44
MSH5-218ENST00000494646 ZBTB12Q9Y330 459 aaPredicted RBP12.29□□□□□ -0.44
MSH5-218ENST00000494646 MYH3P11055 1940 aa12.29□□□□□ -0.44
MSH5-218ENST00000494646 ADAMTSL1Q8N6G6 1762 aa12.28□□□□□ -0.44
MSH5-218ENST00000494646 SHTN1A0MZ66 631 aa12.28□□□□□ -0.44
MSH5-218ENST00000494646 TMEM88BA6NKF7 163 aa12.28□□□□□ -0.44
MSH5-218ENST00000494646 FKBP5Q13451 457 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms