RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 AFF1P51825 1210 aaKnown RBP8.64□□□□□ -1.03
SMC4-224ENST00000494612 CCINQ13939 588 aa8.64□□□□□ -1.03
SMC4-224ENST00000494612 NAGPAQ9UK23 515 aa8.64□□□□□ -1.03
SMC4-224ENST00000494612 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.64□□□□□ -1.03
SMC4-224ENST00000494612 LGR5O75473 907 aa8.63□□□□□ -1.03
SMC4-224ENST00000494612 INPP5BP32019 993 aa8.63□□□□□ -1.03
SMC4-224ENST00000494612 DMRTC2Q8IXT2 367 aaPredicted RBP8.63□□□□□ -1.03
SMC4-224ENST00000494612 FAM196BA6NMK8 535 aa8.62□□□□□ -1.03
SMC4-224ENST00000494612 PSAPL1Q6NUJ1 521 aa8.62□□□□□ -1.03
SMC4-224ENST00000494612 ANKMY2Q8IV38 441 aa8.62□□□□□ -1.03
SMC4-224ENST00000494612 ARXQ96QS3 562 aa8.62□□□□□ -1.03
SMC4-224ENST00000494612 MAP3K6O95382 1288 aa8.61□□□□□ -1.03
SMC4-224ENST00000494612 NFKB1P19838 968 aa8.61□□□□□ -1.03
SMC4-224ENST00000494612 WFDC12Q8WWY7 111 aa8.61□□□□□ -1.03
SMC4-224ENST00000494612 USP17L15C9J2P7 530 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 USP17L10C9JJH3 530 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 USP17L13C9JLJ4 530 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 USP17L12C9JPN9 530 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 USP17L11C9JVI0 530 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 USP17L21D6R901 530 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 USP17L18D6R9N7 530 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 USP17L22D6RA61 530 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 USP17L17D6RBQ6 530 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 USP17L19D6RCP7 530 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 USP17L20D6RJB6 530 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 RGS9O75916 674 aaPredicted RBP8.6□□□□□ -1.03
SMC4-224ENST00000494612 WEE1P30291 646 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 USP17L24Q0WX57 530 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 CALR3Q96L12 384 aaKnown RBP8.6□□□□□ -1.03
SMC4-224ENST00000494612 PNMA5Q96PV4 448 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 VRTNQ9H8Y1 702 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 C11orf16Q9NQ32 467 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 KLK14Q9P0G3 267 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 ZFATQ9P243 1243 aa8.6□□□□□ -1.03
SMC4-224ENST00000494612 ZBTB42B2RXF5 422 aa8.59□□□□□ -1.03
SMC4-224ENST00000494612 IREB2P48200 963 aaKnown RBP8.59□□□□□ -1.03
SMC4-224ENST00000494612 IRAK1P51617 712 aa8.59□□□□□ -1.03
SMC4-224ENST00000494612 QTRT2Q9H974 415 aaKnown RBP8.59□□□□□ -1.03
SMC4-224ENST00000494612 IDH3AP50213 366 aa8.58□□□□□ -1.04
SMC4-224ENST00000494612 GRIK5Q16478 980 aa8.58□□□□□ -1.04
SMC4-224ENST00000494612 DTWD1Q8N5C7 304 aa8.58□□□□□ -1.04
SMC4-224ENST00000494612 EPB42P16452 691 aa8.57□□□□□ -1.04
SMC4-224ENST00000494612 LMOD1P29536 600 aaPredicted RBP8.57□□□□□ -1.04
SMC4-224ENST00000494612 PCSK7Q16549 785 aa8.57□□□□□ -1.04
SMC4-224ENST00000494612 PRR23CQ6ZRP0 262 aa8.57□□□□□ -1.04
SMC4-224ENST00000494612 SLC51AQ86UW1 340 aa8.57□□□□□ -1.04
SMC4-224ENST00000494612 FAM35AQ86V20 835 aa8.57□□□□□ -1.04
SMC4-224ENST00000494612 TRPM4Q8TD43 1214 aa8.57□□□□□ -1.04
SMC4-224ENST00000494612 IFT43Q96FT9 208 aa8.57□□□□□ -1.04
SMC4-224ENST00000494612 MYO19Q96H55 970 aa8.57□□□□□ -1.04
SMC4-224ENST00000494612 FMNL2Q96PY5 1086 aa8.57□□□□□ -1.04
SMC4-224ENST00000494612 FRRS1LQ9P0K9 344 aa8.57□□□□□ -1.04
SMC4-224ENST00000494612 MICAL2O94851 1124 aa8.56□□□□□ -1.04
SMC4-224ENST00000494612 TARSP26639 723 aaKnown RBP8.56□□□□□ -1.04
SMC4-224ENST00000494612 NOS3P29474 1203 aa8.56□□□□□ -1.04
SMC4-224ENST00000494612 SSTR4P31391 388 aa8.56□□□□□ -1.04
SMC4-224ENST00000494612 DGKZQ13574 1117 aa8.56□□□□□ -1.04
SMC4-224ENST00000494612 MSL1Q68DK7 614 aa8.56□□□□□ -1.04
SMC4-224ENST00000494612 FBXO11Q86XK2 927 aa8.56□□□□□ -1.04
SMC4-224ENST00000494612 LPIN3Q9BQK8 851 aa8.56□□□□□ -1.04
SMC4-224ENST00000494612 OPLAHO14841 1288 aa8.55□□□□□ -1.04
SMC4-224ENST00000494612 FOXO3O43524 673 aa8.55□□□□□ -1.04
SMC4-224ENST00000494612 PLAURQ03405 335 aa8.55□□□□□ -1.04
SMC4-224ENST00000494612 C11orf91Q3C1V1 193 aa8.55□□□□□ -1.04
SMC4-224ENST00000494612 PERM1Q5SV97 790 aa8.55□□□□□ -1.04
SMC4-224ENST00000494612 DHX32Q7L7V1 743 aaKnown RBP8.55□□□□□ -1.04
SMC4-224ENST00000494612 CCDC82Q8N4S0 544 aa8.55□□□□□ -1.04
SMC4-224ENST00000494612 TTC9Q92623 222 aa8.55□□□□□ -1.04
SMC4-224ENST00000494612 CPB1P15086 417 aa8.54□□□□□ -1.04
SMC4-224ENST00000494612 ARSDP51689 593 aa8.54□□□□□ -1.04
SMC4-224ENST00000494612 SASH3O75995 380 aa8.53□□□□□ -1.04
SMC4-224ENST00000494612 FSTP19883 344 aa8.53□□□□□ -1.04
SMC4-224ENST00000494612 CFAP70Q5T0N1 1121 aa8.53□□□□□ -1.04
SMC4-224ENST00000494612 IGF2-ASQ6U949 168 aa8.53□□□□□ -1.04
SMC4-224ENST00000494612 MEGF10Q96KG7 1140 aa8.53□□□□□ -1.04
SMC4-224ENST00000494612 LRFN2Q9ULH4 789 aa8.53□□□□□ -1.04
SMC4-224ENST00000494612 EGFRP00533 1210 aa8.52□□□□□ -1.05
SMC4-224ENST00000494612 GPLD1P80108 840 aa8.52□□□□□ -1.05
SMC4-224ENST00000494612 KRT25Q7Z3Z0 450 aa8.52□□□□□ -1.05
SMC4-224ENST00000494612 FAM200AQ8TCP9 573 aa8.51□□□□□ -1.05
SMC4-224ENST00000494612 RTCBQ9Y3I0 505 aaKnown RBP8.51□□□□□ -1.05
SMC4-224ENST00000494612 PTCD1O75127 700 aaKnown RBP8.5□□□□□ -1.05
SMC4-224ENST00000494612 RARAP10276 462 aa8.5□□□□□ -1.05
SMC4-224ENST00000494612 TAL1P17542 331 aaPredicted RBP8.5□□□□□ -1.05
SMC4-224ENST00000494612 CD97P48960 835 aa8.5□□□□□ -1.05
SMC4-224ENST00000494612 NRLP54845 237 aa8.5□□□□□ -1.05
SMC4-224ENST00000494612 MLLT1Q03111 559 aaPredicted RBP8.5□□□□□ -1.05
SMC4-224ENST00000494612 ELMSAN1Q6PJG2 1045 aa8.5□□□□□ -1.05
SMC4-224ENST00000494612 WFDC8Q8IUA0 241 aa8.5□□□□□ -1.05
SMC4-224ENST00000494612 CCDC97Q96F63 343 aaPredicted RBP8.5□□□□□ -1.05
SMC4-224ENST00000494612 TLR7Q9NYK1 1049 aaKnown RBP8.5□□□□□ -1.05
SMC4-224ENST00000494612 RNF114Q9Y508 228 aa8.5□□□□□ -1.05
SMC4-224ENST00000494612 DEAF1O75398 565 aaPredicted RBP8.49□□□□□ -1.05
SMC4-224ENST00000494612 VTI1AQ96AJ9 217 aa8.49□□□□□ -1.05
SMC4-224ENST00000494612 USP20Q9Y2K6 914 aa8.49□□□□□ -1.05
SMC4-224ENST00000494612 COX20Q5RI15 118 aa8.48□□□□□ -1.05
SMC4-224ENST00000494612 LCE1DQ5T752 114 aa8.48□□□□□ -1.05
SMC4-224ENST00000494612 AKTIPQ9H8T0 292 aa8.48□□□□□ -1.05
SMC4-224ENST00000494612 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.48□□□□□ -1.05
SMC4-224ENST00000494612 HFE2Q6ZVN8 426 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms