RNA–Protein interactions for RNA: ENST00000492909.1

PDZRN3-210, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 1 (best)

Gene PDZRN3, Length 1,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-210ENST00000492909 MSL1Q68DK7 614 aa17.4■□□□□ 0.38
PDZRN3-210ENST00000492909 COPRSQ9NQ92 184 aa17.4■□□□□ 0.38
PDZRN3-210ENST00000492909 SMARCA5O60264 1052 aaPredicted RBP17.4■□□□□ 0.38
PDZRN3-210ENST00000492909 CSF1RP07333 972 aa17.4■□□□□ 0.38
PDZRN3-210ENST00000492909 ERC1Q8IUD2 1116 aa17.4■□□□□ 0.38
PDZRN3-210ENST00000492909 FLAD1Q8NFF5 587 aa17.4■□□□□ 0.38
PDZRN3-210ENST00000492909 KIF1BPQ96EK5 621 aa17.4■□□□□ 0.38
PDZRN3-210ENST00000492909 ATF5Q9Y2D1 282 aaPredicted RBP17.4■□□□□ 0.38
PDZRN3-210ENST00000492909 CTSWP56202 376 aa17.39■□□□□ 0.37
PDZRN3-210ENST00000492909 PTPN12Q05209 780 aaKnown RBP17.39■□□□□ 0.37
PDZRN3-210ENST00000492909 G3BP1Q13283 466 aaKnown RBP eCLIP17.39■□□□□ 0.37
PDZRN3-210ENST00000492909 NYXQ9GZU5 481 aa17.39■□□□□ 0.37
PDZRN3-210ENST00000492909 GYS1P13807 737 aa17.38■□□□□ 0.37
PDZRN3-210ENST00000492909 NUTM1Q86Y26 1132 aa17.38■□□□□ 0.37
PDZRN3-210ENST00000492909 TTLL11Q8NHH1 800 aa17.38■□□□□ 0.37
PDZRN3-210ENST00000492909 KLHDC4Q8TBB5 520 aa17.38■□□□□ 0.37
PDZRN3-210ENST00000492909 RHPN1Q8TCX5 695 aa17.38■□□□□ 0.37
PDZRN3-210ENST00000492909 BCL11AQ9H165 835 aa17.38■□□□□ 0.37
PDZRN3-210ENST00000492909 CARMIL3Q8ND23 1372 aa17.38■□□□□ 0.37
PDZRN3-210ENST00000492909 HCLS1P14317 486 aaPredicted RBP17.38■□□□□ 0.37
PDZRN3-210ENST00000492909 GTF2E1P29083 439 aaPredicted RBP17.38■□□□□ 0.37
PDZRN3-210ENST00000492909 CCDC57Q2TAC2 916 aa17.38■□□□□ 0.37
PDZRN3-210ENST00000492909 NBPF5PQ86XG9 351 aaPredicted RBP17.38■□□□□ 0.37
PDZRN3-210ENST00000492909 SIL1Q9H173 461 aa17.38■□□□□ 0.37
PDZRN3-210ENST00000492909 NFIXQ14938 502 aa17.37■□□□□ 0.37
PDZRN3-210ENST00000492909 FAM161AQ3B820 660 aa17.37■□□□□ 0.37
PDZRN3-210ENST00000492909 IPO9Q96P70 1041 aaKnown RBP17.37■□□□□ 0.37
PDZRN3-210ENST00000492909 SRCAPQ6ZRS2 3230 aa17.37■□□□□ 0.37
PDZRN3-210ENST00000492909 IFIT5Q13325 482 aaKnown RBP17.36■□□□□ 0.37
PDZRN3-210ENST00000492909 TPTE2Q6XPS3 522 aa17.36■□□□□ 0.37
PDZRN3-210ENST00000492909 CCDC85AQ96PX6 553 aaPredicted RBP17.36■□□□□ 0.37
PDZRN3-210ENST00000492909 ERFEQ4G0M1 354 aa17.35■□□□□ 0.37
PDZRN3-210ENST00000492909 C16orf71Q8IYS4 520 aaPredicted RBP17.35■□□□□ 0.37
PDZRN3-210ENST00000492909 IL1RAPL2Q9NP60 686 aa17.35■□□□□ 0.37
PDZRN3-210ENST00000492909 PLEKHM2Q8IWE5 1019 aa17.35■□□□□ 0.37
PDZRN3-210ENST00000492909 GREM2Q9H772 168 aa17.35■□□□□ 0.37
PDZRN3-210ENST00000492909 SASH1O94885 1247 aa17.34■□□□□ 0.37
PDZRN3-210ENST00000492909 ITGA6P23229 1130 aa17.34■□□□□ 0.37
PDZRN3-210ENST00000492909 SLC10A5Q5PT55 438 aa17.34■□□□□ 0.37
PDZRN3-210ENST00000492909 MTFR1LQ9H019 292 aa17.34■□□□□ 0.37
PDZRN3-210ENST00000492909 ANKRD18BA2A2Z9 1011 aa17.33■□□□□ 0.37
PDZRN3-210ENST00000492909 NPHP1O15259 732 aa17.33■□□□□ 0.37
PDZRN3-210ENST00000492909 CCDC152Q4G0S7 254 aa17.33■□□□□ 0.37
PDZRN3-210ENST00000492909 TAF7LQ5H9L4 462 aa17.33■□□□□ 0.37
PDZRN3-210ENST00000492909 CLASRPQ8N2M8 674 aaKnown RBP17.33■□□□□ 0.37
PDZRN3-210ENST00000492909 OTUD7AQ8TE49 926 aaPredicted RBP17.33■□□□□ 0.37
PDZRN3-210ENST00000492909 SLC16A10Q8TF71 515 aa17.33■□□□□ 0.37
PDZRN3-210ENST00000492909 ZNF594Q96JF6 807 aaPredicted RBP17.33■□□□□ 0.37
PDZRN3-210ENST00000492909 FBXO3Q9UK99 471 aa17.33■□□□□ 0.37
PDZRN3-210ENST00000492909 BACH2Q9BYV9 841 aa17.33■□□□□ 0.36
PDZRN3-210ENST00000492909 ABCC12Q96J65 1359 aa17.32■□□□□ 0.36
PDZRN3-210ENST00000492909 EYA2O00167 538 aa17.32■□□□□ 0.36
PDZRN3-210ENST00000492909 CIAO1O76071 339 aa17.32■□□□□ 0.36
PDZRN3-210ENST00000492909 TM4SF1P30408 202 aa17.32■□□□□ 0.36
PDZRN3-210ENST00000492909 PTGER2P43116 358 aa17.32■□□□□ 0.36
PDZRN3-210ENST00000492909 NLGN1Q8N2Q7 840 aa17.32■□□□□ 0.36
PDZRN3-210ENST00000492909 CNBD1Q8NA66 436 aa17.32■□□□□ 0.36
PDZRN3-210ENST00000492909 SPON1Q9HCB6 807 aa17.32■□□□□ 0.36
PDZRN3-210ENST00000492909 RTL9Q8NET4 1388 aa17.32■□□□□ 0.36
PDZRN3-210ENST00000492909 IL15P40933 162 aaPredicted RBP17.31■□□□□ 0.36
PDZRN3-210ENST00000492909 ATG9AQ7Z3C6 839 aa17.31■□□□□ 0.36
PDZRN3-210ENST00000492909 SALL3Q9BXA9 1300 aa17.31■□□□□ 0.36
PDZRN3-210ENST00000492909 MX1P20591 662 aa17.3■□□□□ 0.36
PDZRN3-210ENST00000492909 PDE1AP54750 535 aa17.3■□□□□ 0.36
PDZRN3-210ENST00000492909 SF3B3Q15393 1217 aaKnown RBP17.3■□□□□ 0.36
PDZRN3-210ENST00000492909 OSBPL3Q9H4L5 887 aa17.3■□□□□ 0.36
PDZRN3-210ENST00000492909 SERPINB2P05120 415 aa17.3■□□□□ 0.36
PDZRN3-210ENST00000492909 LRRC24Q50LG9 513 aa17.3■□□□□ 0.36
PDZRN3-210ENST00000492909 BMP2KLQ5H9B9 411 aa17.3■□□□□ 0.36
PDZRN3-210ENST00000492909 NLRP3Q96P20 1036 aa17.3■□□□□ 0.36
PDZRN3-210ENST00000492909 SGIP1Q9BQI5 828 aa17.3■□□□□ 0.36
PDZRN3-210ENST00000492909 TFCP2Q12800 502 aa17.29■□□□□ 0.36
PDZRN3-210ENST00000492909 LDHAL6AQ6ZMR3 332 aa17.29■□□□□ 0.36
PDZRN3-210ENST00000492909 AACSQ86V21 672 aa17.29■□□□□ 0.36
PDZRN3-210ENST00000492909 PUS3Q9BZE2 481 aaKnown RBP17.29■□□□□ 0.36
PDZRN3-210ENST00000492909 SPEF2Q9C093 1822 aa17.29■□□□□ 0.36
PDZRN3-210ENST00000492909 LRP5O75197 1615 aa17.29■□□□□ 0.36
PDZRN3-210ENST00000492909 MMP10P09238 476 aa17.28■□□□□ 0.36
PDZRN3-210ENST00000492909 IFIT2P09913 472 aaKnown RBP17.28■□□□□ 0.36
PDZRN3-210ENST00000492909 DDR1Q08345 913 aa17.28■□□□□ 0.36
PDZRN3-210ENST00000492909 TTC22Q5TAA0 569 aa17.28■□□□□ 0.36
PDZRN3-210ENST00000492909 PRR5LQ6MZQ0 368 aa17.28■□□□□ 0.36
PDZRN3-210ENST00000492909 STAP2Q9UGK3 403 aa17.28■□□□□ 0.36
PDZRN3-210ENST00000492909 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.28■□□□□ 0.36
PDZRN3-210ENST00000492909 TNRC6CQ9HCJ0 1690 aaKnown RBP17.28■□□□□ 0.36
PDZRN3-210ENST00000492909 RIC1Q4ADV7 1423 aa17.28■□□□□ 0.36
PDZRN3-210ENST00000492909 POLRMTO00411 1230 aaKnown RBP17.28■□□□□ 0.36
PDZRN3-210ENST00000492909 ST5P78524 1137 aa17.28■□□□□ 0.36
PDZRN3-210ENST00000492909 C3orf67Q6ZVT6 689 aa17.28■□□□□ 0.36
PDZRN3-210ENST00000492909 CCDC24Q8N4L8 307 aa17.28■□□□□ 0.36
PDZRN3-210ENST00000492909 EAF2Q96CJ1 260 aaPredicted RBP17.28■□□□□ 0.36
PDZRN3-210ENST00000492909 SEC31BQ9NQW1 1179 aa17.28■□□□□ 0.36
PDZRN3-210ENST00000492909 AOX1Q06278 1338 aa17.27■□□□□ 0.36
PDZRN3-210ENST00000492909 TNNI3KQ59H18 835 aa17.27■□□□□ 0.35
PDZRN3-210ENST00000492909 CDC5LQ99459 802 aaKnown RBP17.27■□□□□ 0.35
PDZRN3-210ENST00000492909 CNNM1Q9NRU3 951 aa17.27■□□□□ 0.35
PDZRN3-210ENST00000492909 CEP126Q9P2H0 1117 aa17.27■□□□□ 0.35
PDZRN3-210ENST00000492909 FPGT-TNNI3KV9GXZ4 949 aa17.27■□□□□ 0.35
PDZRN3-210ENST00000492909 GPATCH3Q96I76 525 aa17.26■□□□□ 0.35
PDZRN3-210ENST00000492909 GPR108Q9NPR9 543 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms