RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 DCAF8Q5TAQ9 597 aa11.63□□□□□ -0.55
HDAC6-232ENST00000489053 SP8Q8IXZ3 490 aa11.63□□□□□ -0.55
HDAC6-232ENST00000489053 C6orf229H3BNL8 230 aa11.62□□□□□ -0.55
HDAC6-232ENST00000489053 CCER2I3L3R5 266 aa11.62□□□□□ -0.55
HDAC6-232ENST00000489053 PDE8AO60658 829 aa11.62□□□□□ -0.55
HDAC6-232ENST00000489053 SF3B3Q15393 1217 aaKnown RBP11.62□□□□□ -0.55
HDAC6-232ENST00000489053 EAPPQ56P03 285 aaPredicted RBP11.62□□□□□ -0.55
HDAC6-232ENST00000489053 VPS33BQ9H267 617 aa11.62□□□□□ -0.55
HDAC6-232ENST00000489053 ANKIB1Q9P2G1 1089 aa11.62□□□□□ -0.55
HDAC6-232ENST00000489053 HACL1Q9UJ83 578 aa11.62□□□□□ -0.55
HDAC6-232ENST00000489053 NSFL1CQ9UNZ2 370 aaKnown RBP11.62□□□□□ -0.55
HDAC6-232ENST00000489053 CLEC11AQ9Y240 323 aa11.62□□□□□ -0.55
HDAC6-232ENST00000489053 TIAM2Q8IVF5 1701 aa11.61□□□□□ -0.55
HDAC6-232ENST00000489053 E9PSI1 815 aa11.61□□□□□ -0.55
HDAC6-232ENST00000489053 RPS8P62241 208 aaKnown RBP11.61□□□□□ -0.55
HDAC6-232ENST00000489053 AOC3Q16853 763 aa11.61□□□□□ -0.55
HDAC6-232ENST00000489053 GPC2Q8N158 579 aa11.61□□□□□ -0.55
HDAC6-232ENST00000489053 DNAAF4Q8WXU2 420 aa11.61□□□□□ -0.55
HDAC6-232ENST00000489053 JARID2Q92833 1246 aaPredicted RBP11.61□□□□□ -0.55
HDAC6-232ENST00000489053 CCDC85AQ96PX6 553 aaPredicted RBP11.61□□□□□ -0.55
HDAC6-232ENST00000489053 CDC5LQ99459 802 aaKnown RBP11.61□□□□□ -0.55
HDAC6-232ENST00000489053 EYA3Q99504 573 aa11.61□□□□□ -0.55
HDAC6-232ENST00000489053 ARFGEF2Q9Y6D5 1785 aa11.61□□□□□ -0.55
HDAC6-232ENST00000489053 CACNA1SQ13698 1873 aa11.61□□□□□ -0.55
HDAC6-232ENST00000489053 ZNF541Q9H0D2 1346 aa11.6□□□□□ -0.55
HDAC6-232ENST00000489053 ANKRD36CQ5JPF3 1778 aa11.6□□□□□ -0.55
HDAC6-232ENST00000489053 VAMP4O75379 141 aa11.6□□□□□ -0.55
HDAC6-232ENST00000489053 CWF19L2Q2TBE0 894 aaKnown RBP11.6□□□□□ -0.55
HDAC6-232ENST00000489053 G2E3Q7L622 706 aa11.6□□□□□ -0.55
HDAC6-232ENST00000489053 UBE3BQ7Z3V4 1068 aa11.6□□□□□ -0.55
HDAC6-232ENST00000489053 PNMA8AQ86V59 439 aaPredicted RBP11.6□□□□□ -0.55
HDAC6-232ENST00000489053 ANKRD18AQ8IVF6 992 aa11.6□□□□□ -0.55
HDAC6-232ENST00000489053 FER1L6Q2WGJ9 1857 aa11.59□□□□□ -0.55
HDAC6-232ENST00000489053 NEURL1BA8MQ27 555 aa11.59□□□□□ -0.55
HDAC6-232ENST00000489053 FZD9O00144 591 aa11.59□□□□□ -0.55
HDAC6-232ENST00000489053 CTSWP56202 376 aa11.59□□□□□ -0.55
HDAC6-232ENST00000489053 TNIP1Q15025 636 aa11.59□□□□□ -0.55
HDAC6-232ENST00000489053 WASHC4Q2M389 1173 aa11.59□□□□□ -0.55
HDAC6-232ENST00000489053 CHADLQ6NUI6 762 aa11.59□□□□□ -0.55
HDAC6-232ENST00000489053 LINS1Q8NG48 757 aa11.59□□□□□ -0.55
HDAC6-232ENST00000489053 CELF1Q92879 486 aaKnown RBP11.59□□□□□ -0.55
HDAC6-232ENST00000489053 L3MBTL3Q96JM7 780 aaPredicted RBP11.59□□□□□ -0.55
HDAC6-232ENST00000489053 BCL2L13Q9BXK5 485 aa11.59□□□□□ -0.55
HDAC6-232ENST00000489053 ZNRF3Q9ULT6 936 aa11.59□□□□□ -0.55
HDAC6-232ENST00000489053 SBF1O95248 1867 aa11.59□□□□□ -0.55
HDAC6-232ENST00000489053 CDHR2Q9BYE9 1310 aa11.59□□□□□ -0.55
HDAC6-232ENST00000489053 IGKV5-2P06315 115 aa11.58□□□□□ -0.56
HDAC6-232ENST00000489053 EPHX2P34913 555 aa11.58□□□□□ -0.56
HDAC6-232ENST00000489053 IGHMBP2P38935 993 aaKnown RBP11.58□□□□□ -0.56
HDAC6-232ENST00000489053 SLC4A10Q6U841 1118 aa11.58□□□□□ -0.56
HDAC6-232ENST00000489053 LDHDQ86WU2 507 aa11.58□□□□□ -0.56
HDAC6-232ENST00000489053 RTFDC1Q9BY42 306 aaPredicted RBP11.58□□□□□ -0.56
HDAC6-232ENST00000489053 ZC3H12CQ9C0D7 883 aaKnown RBP11.58□□□□□ -0.56
HDAC6-232ENST00000489053 SPINK5Q9NQ38 1064 aaPredicted RBP11.58□□□□□ -0.56
HDAC6-232ENST00000489053 CHMP3Q9Y3E7 222 aa11.58□□□□□ -0.56
HDAC6-232ENST00000489053 RIMBP2O15034 1052 aa11.57□□□□□ -0.56
HDAC6-232ENST00000489053 UFL1O94874 794 aa11.57□□□□□ -0.56
HDAC6-232ENST00000489053 KIAA2012Q0VF49 1180 aa11.57□□□□□ -0.56
HDAC6-232ENST00000489053 GCKRQ14397 625 aa11.57□□□□□ -0.56
HDAC6-232ENST00000489053 DIEXFQ68CQ4 756 aaKnown RBP11.57□□□□□ -0.56
HDAC6-232ENST00000489053 CIAPIN1Q6FI81 312 aa11.57□□□□□ -0.56
HDAC6-232ENST00000489053 TAF1DQ9H5J8 278 aaPredicted RBP11.57□□□□□ -0.56
HDAC6-232ENST00000489053 SEC31BQ9NQW1 1179 aa11.57□□□□□ -0.56
HDAC6-232ENST00000489053 C9orf78Q9NZ63 289 aaPredicted RBP11.57□□□□□ -0.56
HDAC6-232ENST00000489053 GGA1Q9UJY5 639 aa11.57□□□□□ -0.56
HDAC6-232ENST00000489053 RAD17O75943 681 aa11.56□□□□□ -0.56
HDAC6-232ENST00000489053 KCNJ4P48050 445 aa11.56□□□□□ -0.56
HDAC6-232ENST00000489053 GPSM2P81274 684 aa11.56□□□□□ -0.56
HDAC6-232ENST00000489053 TAF7LQ5H9L4 462 aa11.56□□□□□ -0.56
HDAC6-232ENST00000489053 MPHOSPH8Q99549 860 aa11.56□□□□□ -0.56
HDAC6-232ENST00000489053 F6X3S4 739 aa11.55□□□□□ -0.56
HDAC6-232ENST00000489053 SLC51AQ86UW1 340 aa11.55□□□□□ -0.56
HDAC6-232ENST00000489053 SRCIN1Q9C0H9 1055 aa11.55□□□□□ -0.56
HDAC6-232ENST00000489053 XDHP47989 1333 aa11.55□□□□□ -0.56
HDAC6-232ENST00000489053 WDR90Q96KV7 1748 aa11.55□□□□□ -0.56
HDAC6-232ENST00000489053 POTECB2RU33 542 aa11.54□□□□□ -0.56
HDAC6-232ENST00000489053 H7C1D1 291 aa11.54□□□□□ -0.56
HDAC6-232ENST00000489053 H7C1W4 665 aa11.54□□□□□ -0.56
HDAC6-232ENST00000489053 GMPSP49915 693 aaPredicted RBP11.54□□□□□ -0.56
HDAC6-232ENST00000489053 CXCL9Q07325 125 aa11.54□□□□□ -0.56
HDAC6-232ENST00000489053 TTLL11Q8NHH1 800 aa11.54□□□□□ -0.56
HDAC6-232ENST00000489053 TBC1D16Q8TBP0 767 aa11.54□□□□□ -0.56
HDAC6-232ENST00000489053 GREM2Q9H772 168 aa11.54□□□□□ -0.56
HDAC6-232ENST00000489053 DBNDD1Q9H9R9 158 aa11.54□□□□□ -0.56
HDAC6-232ENST00000489053 SMC4Q9NTJ3 1288 aa11.54□□□□□ -0.56
HDAC6-232ENST00000489053 ZNF521Q96K83 1311 aa11.54□□□□□ -0.56
HDAC6-232ENST00000489053 SNED1Q8TER0 1413 aa11.53□□□□□ -0.56
HDAC6-232ENST00000489053 CCDC88AQ3V6T2 1871 aa11.53□□□□□ -0.56
HDAC6-232ENST00000489053 ANKRD18BA2A2Z9 1011 aa11.53□□□□□ -0.56
HDAC6-232ENST00000489053 ECE2O60344 883 aa11.53□□□□□ -0.56
HDAC6-232ENST00000489053 ALDH1L1O75891 902 aa11.53□□□□□ -0.56
HDAC6-232ENST00000489053 ATP2B4P23634 1241 aa11.53□□□□□ -0.56
HDAC6-232ENST00000489053 IFIT5Q13325 482 aaKnown RBP11.53□□□□□ -0.56
HDAC6-232ENST00000489053 DOK7Q18PE1 504 aa11.53□□□□□ -0.56
HDAC6-232ENST00000489053 USP50Q70EL3 339 aaPredicted RBP11.53□□□□□ -0.56
HDAC6-232ENST00000489053 ANKRD2Q9GZV1 360 aa11.53□□□□□ -0.56
HDAC6-232ENST00000489053 ADARB2Q9NS39 739 aaKnown RBP11.53□□□□□ -0.56
HDAC6-232ENST00000489053 PODXL2Q9NZ53 605 aa11.53□□□□□ -0.56
HDAC6-232ENST00000489053 POLLQ9UGP5 575 aa11.53□□□□□ -0.56
HDAC6-232ENST00000489053 PTPRCP08575 1304 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms