RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 SUPT20HQ8NEM7 779 aa31.75■■■□□ 2.67
LIME1-206ENST00000487026 TRIM28Q13263 835 aaKnown RBP31.74■■■□□ 2.67
LIME1-206ENST00000487026 MAP1SQ66K74 1059 aaPredicted RBP31.74■■■□□ 2.67
LIME1-206ENST00000487026 TSPYL6Q8N831 410 aa31.74■■■□□ 2.67
LIME1-206ENST00000487026 TSR2Q969E8 191 aaKnown RBP31.74■■■□□ 2.67
LIME1-206ENST00000487026 VPS33BQ9H267 617 aa31.74■■■□□ 2.67
LIME1-206ENST00000487026 DDX60Q8IY21 1712 aaKnown RBP31.73■■■□□ 2.67
LIME1-206ENST00000487026 EPS15P42566 896 aa31.73■■■□□ 2.67
LIME1-206ENST00000487026 SCNN1DP51172 638 aa31.73■■■□□ 2.67
LIME1-206ENST00000487026 MYD88Q99836 296 aa31.73■■■□□ 2.67
LIME1-206ENST00000487026 MKRN1Q9UHC7 482 aaKnown RBP31.73■■■□□ 2.67
LIME1-206ENST00000487026 IRS4O14654 1257 aaPredicted RBP31.72■■■□□ 2.67
LIME1-206ENST00000487026 LMOD1P29536 600 aaPredicted RBP31.72■■■□□ 2.67
LIME1-206ENST00000487026 SF3B3Q15393 1217 aaKnown RBP31.72■■■□□ 2.67
LIME1-206ENST00000487026 CELF1Q92879 486 aaKnown RBP31.72■■■□□ 2.67
LIME1-206ENST00000487026 CNTROBQ8N137 903 aa31.71■■■□□ 2.67
LIME1-206ENST00000487026 ZNRF3Q9ULT6 936 aa31.71■■■□□ 2.67
LIME1-206ENST00000487026 LTBP1Q14766 1721 aa31.7■■■□□ 2.67
LIME1-206ENST00000487026 CXCL9Q07325 125 aa31.7■■■□□ 2.67
LIME1-206ENST00000487026 CCDC30Q5VVM6 783 aa31.7■■■□□ 2.67
LIME1-206ENST00000487026 ADAMTSL1Q8N6G6 1762 aa31.69■■■□□ 2.66
LIME1-206ENST00000487026 ZNF316A6NFI3 1004 aaPredicted RBP31.69■■■□□ 2.66
LIME1-206ENST00000487026 JARID2Q92833 1246 aaPredicted RBP31.69■■■□□ 2.66
LIME1-206ENST00000487026 KIAA2012Q0VF49 1180 aa31.68■■■□□ 2.66
LIME1-206ENST00000487026 WWC1Q8IX03 1113 aa31.68■■■□□ 2.66
LIME1-206ENST00000487026 MRS2Q9HD23 443 aa31.68■■■□□ 2.66
LIME1-206ENST00000487026 TMC4Q7Z404 712 aa31.67■■■□□ 2.66
LIME1-206ENST00000487026 ZBTB38Q8NAP3 1195 aaPredicted RBP31.67■■■□□ 2.66
LIME1-206ENST00000487026 CCDC27Q2M243 656 aa31.66■■■□□ 2.66
LIME1-206ENST00000487026 COL4A1P02462 1669 aa31.65■■■□□ 2.66
LIME1-206ENST00000487026 TMEM88BA6NKF7 163 aa31.65■■■□□ 2.66
LIME1-206ENST00000487026 RAD17O75943 681 aa31.65■■■□□ 2.66
LIME1-206ENST00000487026 NSFL1CQ9UNZ2 370 aaKnown RBP31.65■■■□□ 2.66
LIME1-206ENST00000487026 ANP32CO43423 234 aa31.64■■■□□ 2.66
LIME1-206ENST00000487026 METTL22Q9BUU2 404 aaPredicted RBP31.64■■■□□ 2.66
LIME1-206ENST00000487026 DDX58O95786 925 aaKnown RBP31.63■■■□□ 2.65
LIME1-206ENST00000487026 HSPA1AP0DMV8 641 aaKnown RBP31.63■■■□□ 2.65
LIME1-206ENST00000487026 HSPA1BP0DMV9 641 aaKnown RBP31.63■■■□□ 2.65
LIME1-206ENST00000487026 COL13A1Q5TAT6 717 aaPredicted RBP31.63■■■□□ 2.65
LIME1-206ENST00000487026 CCDC191Q8NCU4 936 aa31.63■■■□□ 2.65
LIME1-206ENST00000487026 CHMP4AQ9BY43 222 aa31.63■■■□□ 2.65
LIME1-206ENST00000487026 SEC31BQ9NQW1 1179 aa31.63■■■□□ 2.65
LIME1-206ENST00000487026 GPRC5DQ9NZD1 345 aa31.63■■■□□ 2.65
LIME1-206ENST00000487026 MAP3K2Q9Y2U5 619 aa31.63■■■□□ 2.65
LIME1-206ENST00000487026 SALL2Q9Y467 1007 aaPredicted RBP31.63■■■□□ 2.65
LIME1-206ENST00000487026 GMPSP49915 693 aaPredicted RBP31.62■■■□□ 2.65
LIME1-206ENST00000487026 RPS8P62241 208 aaKnown RBP31.62■■■□□ 2.65
LIME1-206ENST00000487026 GPSM2P81274 684 aa31.62■■■□□ 2.65
LIME1-206ENST00000487026 CIAPIN1Q6FI81 312 aa31.62■■■□□ 2.65
LIME1-206ENST00000487026 USP50Q70EL3 339 aaPredicted RBP31.62■■■□□ 2.65
LIME1-206ENST00000487026 DUOX1Q9NRD9 1551 aa31.62■■■□□ 2.65
LIME1-206ENST00000487026 CWC25Q9NXE8 425 aaPredicted RBP31.62■■■□□ 2.65
LIME1-206ENST00000487026 PCCAP05165 728 aaPredicted RBP31.61■■■□□ 2.65
LIME1-206ENST00000487026 FMR1Q06787 632 aaKnown RBP eCLIP31.61■■■□□ 2.65
LIME1-206ENST00000487026 CNTNAP1P78357 1384 aa31.6■■■□□ 2.65
LIME1-206ENST00000487026 YDJCA8MPS7 323 aa31.6■■■□□ 2.65
LIME1-206ENST00000487026 RIMBP2O15034 1052 aa31.6■■■□□ 2.65
LIME1-206ENST00000487026 WASHC4Q2M389 1173 aa31.6■■■□□ 2.65
LIME1-206ENST00000487026 CCDC85AQ96PX6 553 aaPredicted RBP31.6■■■□□ 2.65
LIME1-206ENST00000487026 POLLQ9UGP5 575 aa31.6■■■□□ 2.65
LIME1-206ENST00000487026 LRRC37AA6NMS7 1700 aa31.59■■■□□ 2.65
LIME1-206ENST00000487026 PI4KAP2A4QPH2 592 aa31.59■■■□□ 2.65
LIME1-206ENST00000487026 C6orf229H3BNL8 230 aa31.59■■■□□ 2.65
LIME1-206ENST00000487026 TWISTNBQ3B726 338 aaPredicted RBP31.59■■■□□ 2.65
LIME1-206ENST00000487026 PI4KAP1Q8N8J0 262 aa31.59■■■□□ 2.65
LIME1-206ENST00000487026 BCL2L13Q9BXK5 485 aa31.59■■■□□ 2.65
LIME1-206ENST00000487026 STK31Q9BXU1 1019 aa31.59■■■□□ 2.65
LIME1-206ENST00000487026 TNIP1Q15025 636 aa31.58■■■□□ 2.65
LIME1-206ENST00000487026 KSR2Q6VAB6 950 aa31.58■■■□□ 2.65
LIME1-206ENST00000487026 G2E3Q7L622 706 aa31.58■■■□□ 2.65
LIME1-206ENST00000487026 GPR101Q96P66 508 aaPredicted RBP31.58■■■□□ 2.65
LIME1-206ENST00000487026 ADARB2Q9NS39 739 aaKnown RBP31.58■■■□□ 2.65
LIME1-206ENST00000487026 PDE8AO60658 829 aa31.57■■■□□ 2.64
LIME1-206ENST00000487026 HSP90B1P14625 803 aaKnown RBP31.57■■■□□ 2.64
LIME1-206ENST00000487026 DBNDD1Q9H9R9 158 aa31.57■■■□□ 2.64
LIME1-206ENST00000487026 IGKV5-2P06315 115 aa31.56■■■□□ 2.64
LIME1-206ENST00000487026 VEGFBP49765 207 aa31.56■■■□□ 2.64
LIME1-206ENST00000487026 IL16Q14005 1332 aa31.55■■■□□ 2.64
LIME1-206ENST00000487026 SLC4A2P04920 1241 aa31.55■■■□□ 2.64
LIME1-206ENST00000487026 CCDC152Q4G0S7 254 aa31.55■■■□□ 2.64
LIME1-206ENST00000487026 SHTN1A0MZ66 631 aa31.54■■■□□ 2.64
LIME1-206ENST00000487026 TRAF5O00463 557 aa31.54■■■□□ 2.64
LIME1-206ENST00000487026 DOK7Q18PE1 504 aa31.54■■■□□ 2.64
LIME1-206ENST00000487026 TBC1D16Q8TBP0 767 aa31.54■■■□□ 2.64
LIME1-206ENST00000487026 KCNQ5Q9NR82 932 aa31.53■■■□□ 2.64
LIME1-206ENST00000487026 ZBTB12Q9Y330 459 aaPredicted RBP31.53■■■□□ 2.64
LIME1-206ENST00000487026 CWF19L2Q2TBE0 894 aaKnown RBP31.52■■■□□ 2.64
LIME1-206ENST00000487026 NCBP3Q53F19 620 aaKnown RBP31.52■■■□□ 2.64
LIME1-206ENST00000487026 CNOT7Q9UIV1 285 aaKnown RBP31.52■■■□□ 2.64
LIME1-206ENST00000487026 ABT1Q9ULW3 272 aaKnown RBP31.52■■■□□ 2.64
LIME1-206ENST00000487026 HIRAP54198 1017 aaPredicted RBP31.51■■■□□ 2.63
LIME1-206ENST00000487026 DEFB115Q30KQ5 88 aa31.51■■■□□ 2.63
LIME1-206ENST00000487026 EYA3Q99504 573 aa31.51■■■□□ 2.63
LIME1-206ENST00000487026 ANKIB1Q9P2G1 1089 aa31.51■■■□□ 2.63
LIME1-206ENST00000487026 FANCIQ9NVI1 1328 aa31.5■■■□□ 2.63
LIME1-206ENST00000487026 PSMD14O00487 310 aa31.5■■■□□ 2.63
LIME1-206ENST00000487026 NEXNQ0ZGT2 675 aa31.5■■■□□ 2.63
LIME1-206ENST00000487026 CDHR2Q9BYE9 1310 aa31.49■■■□□ 2.63
LIME1-206ENST00000487026 RASSF10A6NK89 507 aa31.49■■■□□ 2.63
LIME1-206ENST00000487026 ECE2O60344 883 aa31.49■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms