RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-222ENST00000478095 NOB1Q9ULX3 412 aaKnown RBP13.05□□□□□ -0.32
HDAC6-222ENST00000478095 PTPRCP08575 1304 aa13.05□□□□□ -0.32
HDAC6-222ENST00000478095 BCAR3O75815 825 aa13.04□□□□□ -0.32
HDAC6-222ENST00000478095 OLFM4Q6UX06 510 aa13.04□□□□□ -0.32
HDAC6-222ENST00000478095 UBE3BQ7Z3V4 1068 aa13.04□□□□□ -0.32
HDAC6-222ENST00000478095 SLC51AQ86UW1 340 aa13.04□□□□□ -0.32
HDAC6-222ENST00000478095 ANKRD36CQ5JPF3 1778 aa13.04□□□□□ -0.32
HDAC6-222ENST00000478095 RBM17Q96I25 401 aaKnown RBP13.03□□□□□ -0.32
HDAC6-222ENST00000478095 CCDC85AQ96PX6 553 aaPredicted RBP13.03□□□□□ -0.32
HDAC6-222ENST00000478095 SRCIN1Q9C0H9 1055 aa13.03□□□□□ -0.32
HDAC6-222ENST00000478095 H7C1W4 665 aa13.02□□□□□ -0.33
HDAC6-222ENST00000478095 HOXA10P31260 410 aaPredicted RBP13.02□□□□□ -0.33
HDAC6-222ENST00000478095 RASSF7Q02833 373 aa13.02□□□□□ -0.33
HDAC6-222ENST00000478095 FRAT1Q92837 279 aaPredicted RBP13.02□□□□□ -0.33
HDAC6-222ENST00000478095 ABCC4O15439 1325 aa13.02□□□□□ -0.33
HDAC6-222ENST00000478095 PPEF1O14829 653 aaPredicted RBP13.01□□□□□ -0.33
HDAC6-222ENST00000478095 PDE8AO60658 829 aa13.01□□□□□ -0.33
HDAC6-222ENST00000478095 ALDH1B1P30837 517 aa13.01□□□□□ -0.33
HDAC6-222ENST00000478095 CASP7P55210 303 aa13.01□□□□□ -0.33
HDAC6-222ENST00000478095 SF3B3Q15393 1217 aaKnown RBP13.01□□□□□ -0.33
HDAC6-222ENST00000478095 DDX46Q7L014 1031 aaKnown RBP13.01□□□□□ -0.33
HDAC6-222ENST00000478095 CRAMP1Q96RY5 1269 aa13.01□□□□□ -0.33
HDAC6-222ENST00000478095 CREBZFQ9NS37 354 aa13.01□□□□□ -0.33
HDAC6-222ENST00000478095 KIF16BQ96L93 1317 aa13.01□□□□□ -0.33
HDAC6-222ENST00000478095 CDHR2Q9BYE9 1310 aa13.01□□□□□ -0.33
HDAC6-222ENST00000478095 NFKBIEO00221 500 aa13□□□□□ -0.33
HDAC6-222ENST00000478095 ALDH1L1O75891 902 aa13□□□□□ -0.33
HDAC6-222ENST00000478095 HSP90B1P14625 803 aaKnown RBP13□□□□□ -0.33
HDAC6-222ENST00000478095 YY1P25490 414 aa13□□□□□ -0.33
HDAC6-222ENST00000478095 BRPF1P55201 1214 aaPredicted RBP13□□□□□ -0.33
HDAC6-222ENST00000478095 GRAPQ13588 217 aa13□□□□□ -0.33
HDAC6-222ENST00000478095 GRAPLQ8TC17 118 aaPredicted RBP13□□□□□ -0.33
HDAC6-222ENST00000478095 C7orf43Q8WVR3 580 aa13□□□□□ -0.33
HDAC6-222ENST00000478095 API5Q9BZZ5 524 aaKnown RBP13□□□□□ -0.33
HDAC6-222ENST00000478095 FBXO3Q9UK99 471 aa13□□□□□ -0.33
HDAC6-222ENST00000478095 TNNQ9UQP3 1299 aa13□□□□□ -0.33
HDAC6-222ENST00000478095 FARP1Q9Y4F1 1045 aaPredicted RBP13□□□□□ -0.33
HDAC6-222ENST00000478095 DLEC1Q9Y238 1755 aa12.99□□□□□ -0.33
HDAC6-222ENST00000478095 GRM8O00222 908 aa12.99□□□□□ -0.33
HDAC6-222ENST00000478095 CTSWP56202 376 aa12.99□□□□□ -0.33
HDAC6-222ENST00000478095 CCDC93Q567U6 631 aa12.99□□□□□ -0.33
HDAC6-222ENST00000478095 CELF1Q92879 486 aaKnown RBP12.99□□□□□ -0.33
HDAC6-222ENST00000478095 SEC31BQ9NQW1 1179 aa12.99□□□□□ -0.33
HDAC6-222ENST00000478095 C9orf78Q9NZ63 289 aaPredicted RBP12.99□□□□□ -0.33
HDAC6-222ENST00000478095 BRCA1P38398 1863 aaKnown RBP12.99□□□□□ -0.33
HDAC6-222ENST00000478095 CCDC152Q4G0S7 254 aa12.98□□□□□ -0.33
HDAC6-222ENST00000478095 CLUAP1Q96AJ1 413 aa12.98□□□□□ -0.33
HDAC6-222ENST00000478095 GREM2Q9H772 168 aa12.98□□□□□ -0.33
HDAC6-222ENST00000478095 NBPF7P0C2Y1 421 aaPredicted RBP12.97□□□□□ -0.33
HDAC6-222ENST00000478095 TRIM27P14373 513 aa12.97□□□□□ -0.33
HDAC6-222ENST00000478095 PRELPP51888 382 aa12.97□□□□□ -0.33
HDAC6-222ENST00000478095 SOGA3Q5TF21 947 aa12.97□□□□□ -0.33
HDAC6-222ENST00000478095 C9orf131Q5VYM1 1079 aa12.97□□□□□ -0.33
HDAC6-222ENST00000478095 ATF7IPQ6VMQ6 1270 aa12.97□□□□□ -0.33
HDAC6-222ENST00000478095 TTLL11Q8NHH1 800 aa12.97□□□□□ -0.33
HDAC6-222ENST00000478095 TAOK3Q9H2K8 898 aa12.97□□□□□ -0.33
HDAC6-222ENST00000478095 RNF181Q9P0P0 153 aa12.97□□□□□ -0.33
HDAC6-222ENST00000478095 DDX60Q8IY21 1712 aaKnown RBP12.96□□□□□ -0.33
HDAC6-222ENST00000478095 COL4A1P02462 1669 aa12.96□□□□□ -0.33
HDAC6-222ENST00000478095 IPO8O15397 1037 aaKnown RBP12.96□□□□□ -0.33
HDAC6-222ENST00000478095 BBOX1O75936 387 aa12.96□□□□□ -0.33
HDAC6-222ENST00000478095 CCT4P50991 539 aaKnown RBP12.96□□□□□ -0.33
HDAC6-222ENST00000478095 FAM161AQ3B820 660 aa12.96□□□□□ -0.33
HDAC6-222ENST00000478095 EPHA10Q5JZY3 1008 aa12.96□□□□□ -0.33
HDAC6-222ENST00000478095 ZKSCAN2Q63HK3 967 aa12.96□□□□□ -0.33
HDAC6-222ENST00000478095 ARHGAP45Q92619 1136 aa12.96□□□□□ -0.33
HDAC6-222ENST00000478095 SUCLG2Q96I99 432 aa12.96□□□□□ -0.33
HDAC6-222ENST00000478095 PLA2G12BQ9BX93 195 aa12.96□□□□□ -0.33
HDAC6-222ENST00000478095 CHMP3Q9Y3E7 222 aa12.96□□□□□ -0.33
HDAC6-222ENST00000478095 ATP6V0A2Q9Y487 856 aa12.96□□□□□ -0.33
HDAC6-222ENST00000478095 SLX4Q8IY92 1834 aa12.96□□□□□ -0.33
HDAC6-222ENST00000478095 FOXO4P98177 505 aa12.95□□□□□ -0.34
HDAC6-222ENST00000478095 FKBP4Q02790 459 aaKnown RBP eCLIP12.95□□□□□ -0.34
HDAC6-222ENST00000478095 RTKN2Q8IZC4 609 aa12.95□□□□□ -0.34
HDAC6-222ENST00000478095 USP44Q9H0E7 712 aa12.95□□□□□ -0.34
HDAC6-222ENST00000478095 TMX4Q9H1E5 349 aaPredicted RBP12.95□□□□□ -0.34
HDAC6-222ENST00000478095 ZNF277Q9NRM2 450 aaPredicted RBP12.95□□□□□ -0.34
HDAC6-222ENST00000478095 RCAN3Q9UKA8 241 aa12.95□□□□□ -0.34
HDAC6-222ENST00000478095 UTYO14607 1347 aa12.94□□□□□ -0.34
HDAC6-222ENST00000478095 LMNB1P20700 586 aa12.94□□□□□ -0.34
HDAC6-222ENST00000478095 ITGA6P23229 1130 aa12.94□□□□□ -0.34
HDAC6-222ENST00000478095 RPS8P62241 208 aaKnown RBP12.94□□□□□ -0.34
HDAC6-222ENST00000478095 LMBR1LQ6UX01 489 aa12.94□□□□□ -0.34
HDAC6-222ENST00000478095 ANKRD18AQ8IVF6 992 aa12.94□□□□□ -0.34
HDAC6-222ENST00000478095 KAZALD1Q96I82 304 aa12.94□□□□□ -0.34
HDAC6-222ENST00000478095 SNED1Q8TER0 1413 aa12.94□□□□□ -0.34
HDAC6-222ENST00000478095 LTBP3Q9NS15 1303 aa12.93□□□□□ -0.34
HDAC6-222ENST00000478095 ARFGEF1Q9Y6D6 1849 aa12.93□□□□□ -0.34
HDAC6-222ENST00000478095 CSF1RP07333 972 aa12.93□□□□□ -0.34
HDAC6-222ENST00000478095 INTS3Q68E01 1043 aaKnown RBP12.93□□□□□ -0.34
HDAC6-222ENST00000478095 CC2D2BQ6DHV5 1058 aa12.93□□□□□ -0.34
HDAC6-222ENST00000478095 DPP8Q6V1X1 898 aaPredicted RBP12.93□□□□□ -0.34
HDAC6-222ENST00000478095 SP8Q8IXZ3 490 aa12.93□□□□□ -0.34
HDAC6-222ENST00000478095 PLCD3Q8N3E9 789 aa12.93□□□□□ -0.34
HDAC6-222ENST00000478095 ZNF526Q8TF50 670 aaPredicted RBP12.93□□□□□ -0.34
HDAC6-222ENST00000478095 CDC5LQ99459 802 aaKnown RBP12.93□□□□□ -0.34
HDAC6-222ENST00000478095 LAMB2P55268 1798 aa12.93□□□□□ -0.34
HDAC6-222ENST00000478095 CACNA1FO60840 1977 aa12.92□□□□□ -0.34
HDAC6-222ENST00000478095 UBTFL1P0CB47 393 aaPredicted RBP12.92□□□□□ -0.34
HDAC6-222ENST00000478095 RLBP1P12271 317 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms