RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 ABCC4O15439 1325 aa9.14□□□□□ -0.95
HDAC1-204ENST00000471488 HOXA10P31260 410 aaPredicted RBP9.14□□□□□ -0.95
HDAC1-204ENST00000471488 ZC3H15Q8WU90 426 aaKnown RBP9.14□□□□□ -0.95
HDAC1-204ENST00000471488 CCDC102AQ96A19 550 aa9.14□□□□□ -0.95
HDAC1-204ENST00000471488 HPS5Q9UPZ3 1129 aa9.14□□□□□ -0.95
HDAC1-204ENST00000471488 ATP6V0A2Q9Y487 856 aa9.14□□□□□ -0.95
HDAC1-204ENST00000471488 SNED1Q8TER0 1413 aa9.14□□□□□ -0.95
HDAC1-204ENST00000471488 ERVV-1B6SEH8 477 aa9.13□□□□□ -0.95
HDAC1-204ENST00000471488 G3V3G9 751 aa9.13□□□□□ -0.95
HDAC1-204ENST00000471488 HCLS1P14317 486 aaPredicted RBP9.13□□□□□ -0.95
HDAC1-204ENST00000471488 TAF7Q15545 349 aaPredicted RBP9.13□□□□□ -0.95
HDAC1-204ENST00000471488 DCAF8Q5TAQ9 597 aa9.13□□□□□ -0.95
HDAC1-204ENST00000471488 DDX46Q7L014 1031 aaKnown RBP9.13□□□□□ -0.95
HDAC1-204ENST00000471488 THUMPD2Q9BTF0 503 aaKnown RBP9.13□□□□□ -0.95
HDAC1-204ENST00000471488 UTP14AQ9BVJ6 771 aaKnown RBP9.13□□□□□ -0.95
HDAC1-204ENST00000471488 DBNDD1Q9H9R9 158 aa9.13□□□□□ -0.95
HDAC1-204ENST00000471488 SAGE1Q9NXZ1 904 aa9.13□□□□□ -0.95
HDAC1-204ENST00000471488 TIMELESSQ9UNS1 1208 aa9.13□□□□□ -0.95
HDAC1-204ENST00000471488 NUDCQ9Y266 331 aa9.13□□□□□ -0.95
HDAC1-204ENST00000471488 KIF7Q2M1P5 1343 aa9.12□□□□□ -0.95
HDAC1-204ENST00000471488 FAM155AB1AL88 458 aaPredicted RBP9.12□□□□□ -0.95
HDAC1-204ENST00000471488 C6orf229H3BNL8 230 aa9.12□□□□□ -0.95
HDAC1-204ENST00000471488 PSMD14O00487 310 aa9.12□□□□□ -0.95
HDAC1-204ENST00000471488 NTSR2O95665 410 aa9.12□□□□□ -0.95
HDAC1-204ENST00000471488 TBC1D8O95759 1140 aa9.12□□□□□ -0.95
HDAC1-204ENST00000471488 EGFRP00533 1210 aa9.12□□□□□ -0.95
HDAC1-204ENST00000471488 NEFMP07197 916 aa9.12□□□□□ -0.95
HDAC1-204ENST00000471488 EIF2S2P20042 333 aaKnown RBP9.12□□□□□ -0.95
HDAC1-204ENST00000471488 KIAA2012Q0VF49 1180 aa9.12□□□□□ -0.95
HDAC1-204ENST00000471488 MKRN3Q13064 507 aaKnown RBP9.12□□□□□ -0.95
HDAC1-204ENST00000471488 TTLL12Q14166 644 aaPredicted RBP9.12□□□□□ -0.95
HDAC1-204ENST00000471488 DOK7Q18PE1 504 aa9.12□□□□□ -0.95
HDAC1-204ENST00000471488 SULF1Q8IWU6 871 aa9.12□□□□□ -0.95
HDAC1-204ENST00000471488 CSRNP1Q96S65 589 aa9.12□□□□□ -0.95
HDAC1-204ENST00000471488 RSPH6AQ9H0K4 717 aa9.12□□□□□ -0.95
HDAC1-204ENST00000471488 NUP98P52948 1817 aa9.11□□□□□ -0.95
HDAC1-204ENST00000471488 YDJCA8MPS7 323 aa9.11□□□□□ -0.95
HDAC1-204ENST00000471488 AIMP1Q12904 312 aaKnown RBP9.11□□□□□ -0.95
HDAC1-204ENST00000471488 WASHC4Q2M389 1173 aa9.11□□□□□ -0.95
HDAC1-204ENST00000471488 NECTIN2Q92692 538 aa9.11□□□□□ -0.95
HDAC1-204ENST00000471488 VPS33BQ9H267 617 aa9.11□□□□□ -0.95
HDAC1-204ENST00000471488 GGA3Q9NZ52 723 aa9.11□□□□□ -0.95
HDAC1-204ENST00000471488 PGAP2Q9UHJ9 254 aa9.11□□□□□ -0.95
HDAC1-204ENST00000471488 NSFL1CQ9UNZ2 370 aaKnown RBP9.11□□□□□ -0.95
HDAC1-204ENST00000471488 SCAF8Q9UPN6 1271 aaKnown RBP9.11□□□□□ -0.95
HDAC1-204ENST00000471488 RIC1Q4ADV7 1423 aa9.11□□□□□ -0.95
HDAC1-204ENST00000471488 CDHR2Q9BYE9 1310 aa9.1□□□□□ -0.95
HDAC1-204ENST00000471488 COL3A1P02461 1466 aaPredicted RBP9.1□□□□□ -0.95
HDAC1-204ENST00000471488 AKAP11Q9UKA4 1901 aa9.1□□□□□ -0.95
HDAC1-204ENST00000471488 RGL2O15211 777 aa9.1□□□□□ -0.95
HDAC1-204ENST00000471488 BBOX1O75936 387 aa9.1□□□□□ -0.95
HDAC1-204ENST00000471488 ANXA1P04083 346 aa9.1□□□□□ -0.95
HDAC1-204ENST00000471488 SLC10A3P09131 477 aa9.1□□□□□ -0.95
HDAC1-204ENST00000471488 KIF4BQ2VIQ3 1234 aa9.1□□□□□ -0.95
HDAC1-204ENST00000471488 PARP10Q53GL7 1025 aa9.1□□□□□ -0.95
HDAC1-204ENST00000471488 GIGYF2Q6Y7W6 1299 aaKnown RBP9.1□□□□□ -0.95
HDAC1-204ENST00000471488 SP8Q8IXZ3 490 aa9.1□□□□□ -0.95
HDAC1-204ENST00000471488 ZNF34Q8IZ26 560 aa9.1□□□□□ -0.95
HDAC1-204ENST00000471488 GCC1Q96CN9 775 aa9.1□□□□□ -0.95
HDAC1-204ENST00000471488 CDCA5Q96FF9 252 aa9.1□□□□□ -0.95
HDAC1-204ENST00000471488 TRMT112Q9UI30 125 aaKnown RBP9.1□□□□□ -0.95
HDAC1-204ENST00000471488 ASTN2O75129 1339 aaPredicted RBP9.09□□□□□ -0.95
HDAC1-204ENST00000471488 RTL5Q5HYW3 569 aaPredicted RBP9.09□□□□□ -0.95
HDAC1-204ENST00000471488 MOB2Q70IA6 237 aa9.09□□□□□ -0.95
HDAC1-204ENST00000471488 ZNF296Q8WUU4 475 aaPredicted RBP9.09□□□□□ -0.95
HDAC1-204ENST00000471488 RTFDC1Q9BY42 306 aaPredicted RBP9.09□□□□□ -0.95
HDAC1-204ENST00000471488 KCNQ5Q9NR82 932 aa9.09□□□□□ -0.95
HDAC1-204ENST00000471488 LAMB4A4D0S4 1761 aa9.09□□□□□ -0.95
HDAC1-204ENST00000471488 ECE2O60344 883 aa9.08□□□□□ -0.96
HDAC1-204ENST00000471488 TRIM26Q12899 539 aaPredicted RBP9.08□□□□□ -0.96
HDAC1-204ENST00000471488 GRAPQ13588 217 aa9.08□□□□□ -0.96
HDAC1-204ENST00000471488 PKN2Q16513 984 aaKnown RBP9.08□□□□□ -0.96
HDAC1-204ENST00000471488 ANGEL2Q5VTE6 544 aaKnown RBP9.08□□□□□ -0.96
HDAC1-204ENST00000471488 RASAL3Q86YV0 1011 aa9.08□□□□□ -0.96
HDAC1-204ENST00000471488 GRAPLQ8TC17 118 aaPredicted RBP9.08□□□□□ -0.96
HDAC1-204ENST00000471488 PNISRQ8TF01 805 aaKnown RBP9.08□□□□□ -0.96
HDAC1-204ENST00000471488 FBXW7Q969H0 707 aa9.08□□□□□ -0.96
HDAC1-204ENST00000471488 IBTKQ9P2D0 1353 aaPredicted RBP9.08□□□□□ -0.96
HDAC1-204ENST00000471488 UBE2Q2LH0YL09 131 aa9.07□□□□□ -0.96
HDAC1-204ENST00000471488 EIF4A1P60842 406 aaKnown RBP9.07□□□□□ -0.96
HDAC1-204ENST00000471488 PRKG1Q13976 671 aa9.07□□□□□ -0.96
HDAC1-204ENST00000471488 SCARF1Q14162 830 aa9.07□□□□□ -0.96
HDAC1-204ENST00000471488 HABP4Q5JVS0 413 aaKnown RBP9.07□□□□□ -0.96
HDAC1-204ENST00000471488 PRAMEF18Q5VWM3 479 aa9.07□□□□□ -0.96
HDAC1-204ENST00000471488 DPF2Q92785 391 aa9.07□□□□□ -0.96
HDAC1-204ENST00000471488 PER1O15534 1290 aaPredicted RBP9.06□□□□□ -0.96
HDAC1-204ENST00000471488 RPS12P25398 132 aaKnown RBP9.06□□□□□ -0.96
HDAC1-204ENST00000471488 GPSM2P81274 684 aa9.06□□□□□ -0.96
HDAC1-204ENST00000471488 EYA3Q99504 573 aa9.06□□□□□ -0.96
HDAC1-204ENST00000471488 ZC3H12CQ9C0D7 883 aaKnown RBP9.06□□□□□ -0.96
HDAC1-204ENST00000471488 TSPYL4Q9UJ04 414 aa9.06□□□□□ -0.96
HDAC1-204ENST00000471488 POLR2AP24928 1970 aaKnown RBP9.06□□□□□ -0.96
HDAC1-204ENST00000471488 SH3TC1Q8TE82 1336 aa9.05□□□□□ -0.96
HDAC1-204ENST00000471488 TAF1P21675 1872 aa9.05□□□□□ -0.96
HDAC1-204ENST00000471488 GPR25O00155 361 aa9.05□□□□□ -0.96
HDAC1-204ENST00000471488 HTATSF1O43719 755 aaKnown RBP9.05□□□□□ -0.96
HDAC1-204ENST00000471488 PROSER3Q2NL68 480 aa9.05□□□□□ -0.96
HDAC1-204ENST00000471488 SLC10A5Q5PT55 438 aa9.05□□□□□ -0.96
HDAC1-204ENST00000471488 FBXO46Q6PJ61 603 aaPredicted RBP9.05□□□□□ -0.96
HDAC1-204ENST00000471488 COPS6Q7L5N1 327 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms