RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 MASTLQ96GX5 879 aa13.27□□□□□ -0.29
SMC1A-206ENST00000470241 CCDC85AQ96PX6 553 aaPredicted RBP13.27□□□□□ -0.29
SMC1A-206ENST00000470241 BICC1Q9H694 974 aaKnown RBP13.27□□□□□ -0.29
SMC1A-206ENST00000470241 DDX19BQ9UMR2 479 aa13.27□□□□□ -0.29
SMC1A-206ENST00000470241 LRRFIP2Q9Y608 721 aaKnown RBP13.27□□□□□ -0.29
SMC1A-206ENST00000470241 DDX60Q8IY21 1712 aaKnown RBP13.27□□□□□ -0.29
SMC1A-206ENST00000470241 KIAA1551Q9HCM1 1747 aa13.27□□□□□ -0.29
SMC1A-206ENST00000470241 RABL6Q3YEC7 729 aaPredicted RBP13.26□□□□□ -0.29
SMC1A-206ENST00000470241 CCDC152Q4G0S7 254 aa13.26□□□□□ -0.29
SMC1A-206ENST00000470241 LMBR1LQ6UX01 489 aa13.26□□□□□ -0.29
SMC1A-206ENST00000470241 RPGRQ92834 1020 aaKnown RBP13.26□□□□□ -0.29
SMC1A-206ENST00000470241 ZNF622Q969S3 477 aaKnown RBP eCLIP13.26□□□□□ -0.293e-7■□□□□ 11
SMC1A-206ENST00000470241 RBM17Q96I25 401 aaKnown RBP13.26□□□□□ -0.29
SMC1A-206ENST00000470241 GREM2Q9H772 168 aa13.26□□□□□ -0.29
SMC1A-206ENST00000470241 COL11A2P13942 1736 aaPredicted RBP13.25□□□□□ -0.29
SMC1A-206ENST00000470241 RTL9Q8NET4 1388 aa13.25□□□□□ -0.29
SMC1A-206ENST00000470241 GNAI2P04899 355 aa13.25□□□□□ -0.29
SMC1A-206ENST00000470241 FAM161AQ3B820 660 aa13.25□□□□□ -0.29
SMC1A-206ENST00000470241 CRAMP1Q96RY5 1269 aa13.25□□□□□ -0.29
SMC1A-206ENST00000470241 CRBNQ96SW2 442 aa13.25□□□□□ -0.29
SMC1A-206ENST00000470241 SEC31BQ9NQW1 1179 aa13.25□□□□□ -0.29
SMC1A-206ENST00000470241 PIM2Q9P1W9 311 aa13.25□□□□□ -0.29
SMC1A-206ENST00000470241 LAMB2P55268 1798 aa13.25□□□□□ -0.29
SMC1A-206ENST00000470241 DDX46Q7L014 1031 aaKnown RBP13.24□□□□□ -0.29
SMC1A-206ENST00000470241 TTLL6Q8N841 843 aa13.24□□□□□ -0.29
SMC1A-206ENST00000470241 CELF1Q92879 486 aaKnown RBP13.24□□□□□ -0.29
SMC1A-206ENST00000470241 CNKSR1Q969H4 720 aa13.24□□□□□ -0.29
SMC1A-206ENST00000470241 C1orf115Q9H7X2 142 aa13.24□□□□□ -0.29
SMC1A-206ENST00000470241 ZBTB40Q9NUA8 1239 aa13.24□□□□□ -0.29
SMC1A-206ENST00000470241 WWC3Q9ULE0 1092 aa13.24□□□□□ -0.29
SMC1A-206ENST00000470241 HDAC5Q9UQL6 1122 aa13.24□□□□□ -0.29
SMC1A-206ENST00000470241 ITGA6P23229 1130 aa13.23□□□□□ -0.29
SMC1A-206ENST00000470241 ALDH1B1P30837 517 aa13.23□□□□□ -0.29
SMC1A-206ENST00000470241 GRAPQ13588 217 aa13.23□□□□□ -0.29
SMC1A-206ENST00000470241 GRAPLQ8TC17 118 aaPredicted RBP13.23□□□□□ -0.29
SMC1A-206ENST00000470241 CHMP3Q9Y3E7 222 aa13.23□□□□□ -0.29
SMC1A-206ENST00000470241 COL4A1P02462 1669 aa13.22□□□□□ -0.29
SMC1A-206ENST00000470241 SRCAPQ6ZRS2 3230 aa13.22□□□□□ -0.29
SMC1A-206ENST00000470241 MTX1Q13505 466 aa13.22□□□□□ -0.29
SMC1A-206ENST00000470241 DALRD3Q5D0E6 543 aaKnown RBP13.22□□□□□ -0.29
SMC1A-206ENST00000470241 PRPF40BQ6NWY9 871 aaKnown RBP13.22□□□□□ -0.29
SMC1A-206ENST00000470241 CHMP4BQ9H444 224 aaKnown RBP13.22□□□□□ -0.29
SMC1A-206ENST00000470241 ANKRD18BA2A2Z9 1011 aa13.21□□□□□ -0.29
SMC1A-206ENST00000470241 BBOX1O75936 387 aa13.21□□□□□ -0.29
SMC1A-206ENST00000470241 RFX5P48382 616 aaPredicted RBP13.21□□□□□ -0.29
SMC1A-206ENST00000470241 RPS8P62241 208 aaKnown RBP13.21□□□□□ -0.29
SMC1A-206ENST00000470241 IRX6P78412 446 aaPredicted RBP13.21□□□□□ -0.29
SMC1A-206ENST00000470241 IFIT5Q13325 482 aaKnown RBP13.21□□□□□ -0.29
SMC1A-206ENST00000470241 SLC51AQ86UW1 340 aa13.21□□□□□ -0.29
SMC1A-206ENST00000470241 C7orf43Q8WVR3 580 aa13.21□□□□□ -0.29
SMC1A-206ENST00000470241 DLEC1Q9Y238 1755 aa13.2□□□□□ -0.3
SMC1A-206ENST00000470241 PPEF1O14829 653 aaPredicted RBP13.2□□□□□ -0.3
SMC1A-206ENST00000470241 CCDC57Q2TAC2 916 aa13.2□□□□□ -0.3
SMC1A-206ENST00000470241 CEP85Q6P2H3 762 aa13.2□□□□□ -0.3
SMC1A-206ENST00000470241 EXOC6Q8TAG9 804 aa13.2□□□□□ -0.3
SMC1A-206ENST00000470241 ZNF594Q96JF6 807 aaPredicted RBP13.2□□□□□ -0.3
SMC1A-206ENST00000470241 CDC5LQ99459 802 aaKnown RBP13.2□□□□□ -0.3
SMC1A-206ENST00000470241 BCS1LQ9Y276 419 aa13.2□□□□□ -0.3
SMC1A-206ENST00000470241 PNMA6EA0A0J9YXQ4 647 aa13.19□□□□□ -0.3
SMC1A-206ENST00000470241 SRGAP3O43295 1099 aa13.19□□□□□ -0.3
SMC1A-206ENST00000470241 YBX3P16989 372 aaKnown RBP eCLIP13.19□□□□□ -0.37e-7■■□□□ 12.9
SMC1A-206ENST00000470241 ATP8B2P98198 1209 aa13.19□□□□□ -0.3
SMC1A-206ENST00000470241 OLFM4Q6UX06 510 aa13.19□□□□□ -0.3
SMC1A-206ENST00000470241 ANKRD18AQ8IVF6 992 aa13.19□□□□□ -0.3
SMC1A-206ENST00000470241 KLHDC4Q8TBB5 520 aa13.19□□□□□ -0.3
SMC1A-206ENST00000470241 ZNF219Q9P2Y4 722 aaPredicted RBP13.19□□□□□ -0.3
SMC1A-206ENST00000470241 ATP6V0A2Q9Y487 856 aa13.19□□□□□ -0.3
SMC1A-206ENST00000470241 C21orf2O43822 256 aa13.18□□□□□ -0.3
SMC1A-206ENST00000470241 IGHMBP2P38935 993 aaKnown RBP13.18□□□□□ -0.3
SMC1A-206ENST00000470241 PTPN12Q05209 780 aaKnown RBP13.18□□□□□ -0.3
SMC1A-206ENST00000470241 SP8Q8IXZ3 490 aa13.18□□□□□ -0.3
SMC1A-206ENST00000470241 BRCA1P38398 1863 aaKnown RBP13.17□□□□□ -0.3
SMC1A-206ENST00000470241 POLA2Q14181 598 aa13.17□□□□□ -0.3
SMC1A-206ENST00000470241 TAF7LQ5H9L4 462 aa13.17□□□□□ -0.3
SMC1A-206ENST00000470241 TMC4Q7Z404 712 aa13.17□□□□□ -0.3
SMC1A-206ENST00000470241 SIRT2Q8IXJ6 389 aa13.17□□□□□ -0.3
SMC1A-206ENST00000470241 RPAP2Q8IXW5 612 aaPredicted RBP13.17□□□□□ -0.3
SMC1A-206ENST00000470241 PELP1Q8IZL8 1130 aaKnown RBP13.17□□□□□ -0.3
SMC1A-206ENST00000470241 SSH3Q8TE77 659 aa13.17□□□□□ -0.3
SMC1A-206ENST00000470241 BSDC1Q9NW68 430 aaPredicted RBP13.17□□□□□ -0.3
SMC1A-206ENST00000470241 SLX4Q8IY92 1834 aa13.16□□□□□ -0.3
SMC1A-206ENST00000470241 SNED1Q8TER0 1413 aa13.16□□□□□ -0.3
SMC1A-206ENST00000470241 GPR162Q16538 588 aa13.16□□□□□ -0.3
SMC1A-206ENST00000470241 MPHOSPH8Q99549 860 aa13.16□□□□□ -0.3
SMC1A-206ENST00000470241 PUS3Q9BZE2 481 aaKnown RBP13.16□□□□□ -0.3
SMC1A-206ENST00000470241 COPRSQ9NQ92 184 aa13.16□□□□□ -0.3
SMC1A-206ENST00000470241 PA2G4Q9UQ80 394 aaKnown RBP13.16□□□□□ -0.3
SMC1A-206ENST00000470241 PCDHB15Q9Y5E8 787 aa13.16□□□□□ -0.3
SMC1A-206ENST00000470241 MYH3P11055 1940 aa13.15□□□□□ -0.3
SMC1A-206ENST00000470241 LRRC24Q50LG9 513 aa13.15□□□□□ -0.3
SMC1A-206ENST00000470241 CCDC93Q567U6 631 aa13.15□□□□□ -0.3
SMC1A-206ENST00000470241 SOGA3Q5TF21 947 aa13.15□□□□□ -0.3
SMC1A-206ENST00000470241 CC2D2BQ6DHV5 1058 aa13.15□□□□□ -0.3
SMC1A-206ENST00000470241 LDHAL6AQ6ZMR3 332 aa13.15□□□□□ -0.3
SMC1A-206ENST00000470241 MINPP1Q9UNW1 487 aa13.15□□□□□ -0.3
SMC1A-206ENST00000470241 RIPOR2Q9Y4F9 1068 aa13.15□□□□□ -0.3
SMC1A-206ENST00000470241 EYA2O00167 538 aa13.14□□□□□ -0.31
SMC1A-206ENST00000470241 GPSM2P81274 684 aa13.14□□□□□ -0.31
SMC1A-206ENST00000470241 AAMPQ13685 434 aa13.14□□□□□ -0.31
SMC1A-206ENST00000470241 CNNM1Q9NRU3 951 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms