RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 NCBP3Q53F19 620 aaKnown RBP18.57■□□□□ 0.56
SNRNP40-203ENST00000463988 RIC3Q7Z5B4 369 aa18.57■□□□□ 0.56
SNRNP40-203ENST00000463988 C8orf58Q8NAV2 365 aa18.57■□□□□ 0.56
SNRNP40-203ENST00000463988 ZNRF3Q9ULT6 936 aa18.57■□□□□ 0.56
SNRNP40-203ENST00000463988 CLEC11AQ9Y240 323 aa18.57■□□□□ 0.56
SNRNP40-203ENST00000463988 HSP90B1P14625 803 aaKnown RBP18.56■□□□□ 0.56
SNRNP40-203ENST00000463988 KIAA2012Q0VF49 1180 aa18.56■□□□□ 0.56
SNRNP40-203ENST00000463988 CCDC184Q52MB2 194 aa18.56■□□□□ 0.56
SNRNP40-203ENST00000463988 CCDC30Q5VVM6 783 aa18.56■□□□□ 0.56
SNRNP40-203ENST00000463988 PHAXQ9H814 394 aaKnown RBP18.56■□□□□ 0.56
SNRNP40-203ENST00000463988 PCNTO95613 3336 aa18.56■□□□□ 0.56
SNRNP40-203ENST00000463988 DDX60Q8IY21 1712 aaKnown RBP18.55■□□□□ 0.56
SNRNP40-203ENST00000463988 SCNN1DP51172 638 aa18.55■□□□□ 0.56
SNRNP40-203ENST00000463988 ZBTB38Q8NAP3 1195 aaPredicted RBP18.55■□□□□ 0.56
SNRNP40-203ENST00000463988 IRS4O14654 1257 aaPredicted RBP18.54■□□□□ 0.56
SNRNP40-203ENST00000463988 CNTROBQ8N137 903 aa18.54■□□□□ 0.56
SNRNP40-203ENST00000463988 CCDC191Q8NCU4 936 aa18.54■□□□□ 0.56
SNRNP40-203ENST00000463988 TMEM88BA6NKF7 163 aa18.53■□□□□ 0.56
SNRNP40-203ENST00000463988 DDX58O95786 925 aaKnown RBP18.53■□□□□ 0.56
SNRNP40-203ENST00000463988 EPS15P42566 896 aa18.53■□□□□ 0.56
SNRNP40-203ENST00000463988 CXCL9Q07325 125 aa18.53■□□□□ 0.56
SNRNP40-203ENST00000463988 USP50Q70EL3 339 aaPredicted RBP18.53■□□□□ 0.56
SNRNP40-203ENST00000463988 WWC1Q8IX03 1113 aa18.53■□□□□ 0.56
SNRNP40-203ENST00000463988 ZNF428Q96B54 188 aa18.53■□□□□ 0.56
SNRNP40-203ENST00000463988 IL16Q14005 1332 aa18.52■□□□□ 0.56
SNRNP40-203ENST00000463988 LRRC37AA6NMS7 1700 aa18.52■□□□□ 0.56
SNRNP40-203ENST00000463988 MAP1SQ66K74 1059 aaPredicted RBP18.52■□□□□ 0.56
SNRNP40-203ENST00000463988 TSPYL6Q8N831 410 aa18.52■□□□□ 0.56
SNRNP40-203ENST00000463988 CELF1Q92879 486 aaKnown RBP18.52■□□□□ 0.56
SNRNP40-203ENST00000463988 CNTNAP1P78357 1384 aa18.52■□□□□ 0.55
SNRNP40-203ENST00000463988 LTBP1Q14766 1721 aa18.52■□□□□ 0.55
SNRNP40-203ENST00000463988 CDHR2Q9BYE9 1310 aa18.51■□□□□ 0.55
SNRNP40-203ENST00000463988 PCCAP05165 728 aaPredicted RBP18.51■□□□□ 0.55
SNRNP40-203ENST00000463988 TNIP1Q15025 636 aa18.51■□□□□ 0.55
SNRNP40-203ENST00000463988 MYD88Q99836 296 aa18.51■□□□□ 0.55
SNRNP40-203ENST00000463988 METTL22Q9BUU2 404 aaPredicted RBP18.51■□□□□ 0.55
SNRNP40-203ENST00000463988 GPRC5DQ9NZD1 345 aa18.51■□□□□ 0.55
SNRNP40-203ENST00000463988 MKRN1Q9UHC7 482 aaKnown RBP18.51■□□□□ 0.55
SNRNP40-203ENST00000463988 TAF1P21675 1872 aa18.51■□□□□ 0.55
SNRNP40-203ENST00000463988 ZNF316A6NFI3 1004 aaPredicted RBP18.5■□□□□ 0.55
SNRNP40-203ENST00000463988 RPS8P62241 208 aaKnown RBP18.5■□□□□ 0.55
SNRNP40-203ENST00000463988 RTL5Q5HYW3 569 aaPredicted RBP18.5■□□□□ 0.55
SNRNP40-203ENST00000463988 CIAPIN1Q6FI81 312 aa18.5■□□□□ 0.55
SNRNP40-203ENST00000463988 TSR2Q969E8 191 aaKnown RBP18.5■□□□□ 0.55
SNRNP40-203ENST00000463988 ADARB2Q9NS39 739 aaKnown RBP18.5■□□□□ 0.55
SNRNP40-203ENST00000463988 CWC25Q9NXE8 425 aaPredicted RBP18.5■□□□□ 0.55
SNRNP40-203ENST00000463988 DUOX1Q9NRD9 1551 aa18.5■□□□□ 0.55
SNRNP40-203ENST00000463988 ANP32CO43423 234 aa18.49■□□□□ 0.55
SNRNP40-203ENST00000463988 HSPA1AP0DMV8 641 aaKnown RBP18.49■□□□□ 0.55
SNRNP40-203ENST00000463988 HSPA1BP0DMV9 641 aaKnown RBP18.49■□□□□ 0.55
SNRNP40-203ENST00000463988 KSR2Q6VAB6 950 aa18.49■□□□□ 0.55
SNRNP40-203ENST00000463988 STK31Q9BXU1 1019 aa18.49■□□□□ 0.55
SNRNP40-203ENST00000463988 MRS2Q9HD23 443 aa18.49■□□□□ 0.55
SNRNP40-203ENST00000463988 NSFL1CQ9UNZ2 370 aaKnown RBP18.49■□□□□ 0.55
SNRNP40-203ENST00000463988 GMPSP49915 693 aaPredicted RBP18.48■□□□□ 0.55
SNRNP40-203ENST00000463988 WASHC4Q2M389 1173 aa18.48■□□□□ 0.55
SNRNP40-203ENST00000463988 PDE8AO60658 829 aa18.47■□□□□ 0.55
SNRNP40-203ENST00000463988 GPSM2P81274 684 aa18.47■□□□□ 0.55
SNRNP40-203ENST00000463988 TWISTNBQ3B726 338 aaPredicted RBP18.47■□□□□ 0.55
SNRNP40-203ENST00000463988 CCDC152Q4G0S7 254 aa18.47■□□□□ 0.55
SNRNP40-203ENST00000463988 EYA3Q99504 573 aa18.47■□□□□ 0.55
SNRNP40-203ENST00000463988 MAP3K2Q9Y2U5 619 aa18.47■□□□□ 0.55
SNRNP40-203ENST00000463988 PI4KAP2A4QPH2 592 aa18.46■□□□□ 0.55
SNRNP40-203ENST00000463988 RASSF10A6NK89 507 aa18.46■□□□□ 0.55
SNRNP40-203ENST00000463988 YDJCA8MPS7 323 aa18.46■□□□□ 0.55
SNRNP40-203ENST00000463988 RAD17O75943 681 aa18.46■□□□□ 0.55
SNRNP40-203ENST00000463988 COL13A1Q5TAT6 717 aaPredicted RBP18.46■□□□□ 0.55
SNRNP40-203ENST00000463988 PI4KAP1Q8N8J0 262 aa18.46■□□□□ 0.55
SNRNP40-203ENST00000463988 PODXL2Q9NZ53 605 aa18.46■□□□□ 0.55
SNRNP40-203ENST00000463988 POLLQ9UGP5 575 aa18.46■□□□□ 0.55
SNRNP40-203ENST00000463988 C6orf229H3BNL8 230 aa18.45■□□□□ 0.54
SNRNP40-203ENST00000463988 VEGFBP49765 207 aa18.45■□□□□ 0.54
SNRNP40-203ENST00000463988 NEXNQ0ZGT2 675 aa18.45■□□□□ 0.54
SNRNP40-203ENST00000463988 ZC3H15Q8WU90 426 aaKnown RBP18.45■□□□□ 0.54
SNRNP40-203ENST00000463988 BCL2L13Q9BXK5 485 aa18.45■□□□□ 0.54
SNRNP40-203ENST00000463988 SEC31BQ9NQW1 1179 aa18.45■□□□□ 0.54
SNRNP40-203ENST00000463988 PGAP2Q9UHJ9 254 aa18.45■□□□□ 0.54
SNRNP40-203ENST00000463988 COL4A1P02462 1669 aa18.44■□□□□ 0.54
SNRNP40-203ENST00000463988 IGKV5-2P06315 115 aa18.44■□□□□ 0.54
SNRNP40-203ENST00000463988 WDR63Q8IWG1 891 aa18.44■□□□□ 0.54
SNRNP40-203ENST00000463988 TBC1D16Q8TBP0 767 aa18.44■□□□□ 0.54
SNRNP40-203ENST00000463988 DPF2Q92785 391 aa18.44■□□□□ 0.54
SNRNP40-203ENST00000463988 SLC4A2P04920 1241 aa18.43■□□□□ 0.54
SNRNP40-203ENST00000463988 DEFB115Q30KQ5 88 aa18.43■□□□□ 0.54
SNRNP40-203ENST00000463988 CNOT7Q9UIV1 285 aaKnown RBP18.43■□□□□ 0.54
SNRNP40-203ENST00000463988 H7C1D1 291 aa18.42■□□□□ 0.54
SNRNP40-203ENST00000463988 RIMBP2O15034 1052 aa18.42■□□□□ 0.54
SNRNP40-203ENST00000463988 DBNDD1Q9H9R9 158 aa18.42■□□□□ 0.54
SNRNP40-203ENST00000463988 FANCIQ9NVI1 1328 aa18.42■□□□□ 0.54
SNRNP40-203ENST00000463988 PSMD14O00487 310 aa18.41■□□□□ 0.54
SNRNP40-203ENST00000463988 RPS12P25398 132 aaKnown RBP18.41■□□□□ 0.54
SNRNP40-203ENST00000463988 CTSWP56202 376 aa18.41■□□□□ 0.54
SNRNP40-203ENST00000463988 G2E3Q7L622 706 aa18.41■□□□□ 0.54
SNRNP40-203ENST00000463988 ANKRD18AQ8IVF6 992 aa18.41■□□□□ 0.54
SNRNP40-203ENST00000463988 JARID2Q92833 1246 aaPredicted RBP18.41■□□□□ 0.54
SNRNP40-203ENST00000463988 ZC3H12CQ9C0D7 883 aaKnown RBP18.41■□□□□ 0.54
SNRNP40-203ENST00000463988 ANKIB1Q9P2G1 1089 aa18.41■□□□□ 0.54
SNRNP40-203ENST00000463988 GGA1Q9UJY5 639 aa18.41■□□□□ 0.54
SNRNP40-203ENST00000463988 ABT1Q9ULW3 272 aaKnown RBP18.41■□□□□ 0.54
SNRNP40-203ENST00000463988 NEURL1BA8MQ27 555 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms