RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 CWC22Q9HCG8 908 aaKnown RBP16.41■□□□□ 0.22
CLK3-203ENST00000454830 BCL9O00512 1426 aa16.41■□□□□ 0.22
CLK3-203ENST00000454830 TTC39AQ5SRH9 613 aa16.41■□□□□ 0.22
CLK3-203ENST00000454830 TCEANC2Q96MN5 208 aa16.41■□□□□ 0.22
CLK3-203ENST00000454830 LOC102724428A0A0B4J2F2 783 aa16.41■□□□□ 0.22
CLK3-203ENST00000454830 PCCAP05165 728 aaPredicted RBP16.41■□□□□ 0.22
CLK3-203ENST00000454830 SIK1P57059 783 aa16.41■□□□□ 0.22
CLK3-203ENST00000454830 ATG9AQ7Z3C6 839 aa16.41■□□□□ 0.22
CLK3-203ENST00000454830 NLRP10Q86W26 655 aa16.41■□□□□ 0.22
CLK3-203ENST00000454830 SEC62Q99442 399 aaKnown RBP16.4■□□□□ 0.22
CLK3-203ENST00000454830 AK9Q5TCS8 1911 aa16.4■□□□□ 0.22
CLK3-203ENST00000454830 TNS2Q63HR2 1409 aa16.4■□□□□ 0.22
CLK3-203ENST00000454830 CCDC158Q5M9N0 1113 aa16.4■□□□□ 0.22
CLK3-203ENST00000454830 FAM182BQ5T319 152 aa16.4■□□□□ 0.22
CLK3-203ENST00000454830 MEX3CQ5U5Q3 659 aaKnown RBP16.4■□□□□ 0.22
CLK3-203ENST00000454830 RNF20Q5VTR2 975 aa16.4■□□□□ 0.22
CLK3-203ENST00000454830 CYP46A1Q9Y6A2 500 aa16.4■□□□□ 0.22
CLK3-203ENST00000454830 FGD1P98174 961 aa16.4■□□□□ 0.22
CLK3-203ENST00000454830 CCDC87Q9NVE4 849 aa16.4■□□□□ 0.22
CLK3-203ENST00000454830 HCLS1P14317 486 aaPredicted RBP16.39■□□□□ 0.22
CLK3-203ENST00000454830 ITGA6P23229 1130 aa16.39■□□□□ 0.22
CLK3-203ENST00000454830 DDIT3P35638 169 aa16.39■□□□□ 0.22
CLK3-203ENST00000454830 CRKLP46109 303 aaKnown RBP16.39■□□□□ 0.22
CLK3-203ENST00000454830 PDRG1Q9NUG6 133 aa16.39■□□□□ 0.22
CLK3-203ENST00000454830 AK2P54819 239 aa16.39■□□□□ 0.21
CLK3-203ENST00000454830 ADCK5Q3MIX3 580 aa16.39■□□□□ 0.21
CLK3-203ENST00000454830 ZNF589Q86UQ0 364 aaPredicted RBP16.39■□□□□ 0.21
CLK3-203ENST00000454830 GREM2Q9H772 168 aa16.39■□□□□ 0.21
CLK3-203ENST00000454830 ARFGEF2Q9Y6D5 1785 aa16.39■□□□□ 0.21
CLK3-203ENST00000454830 ANKRD18BA2A2Z9 1011 aa16.39■□□□□ 0.21
CLK3-203ENST00000454830 SLFNL1Q499Z3 407 aa16.39■□□□□ 0.21
CLK3-203ENST00000454830 CREB3L3Q68CJ9 461 aa16.39■□□□□ 0.21
CLK3-203ENST00000454830 BICDL1Q6ZP65 573 aa16.39■□□□□ 0.21
CLK3-203ENST00000454830 THRAP3Q9Y2W1 955 aaKnown RBP16.39■□□□□ 0.21
CLK3-203ENST00000454830 COL14A1Q05707 1796 aaKnown RBP16.39■□□□□ 0.21
CLK3-203ENST00000454830 PAG1Q9NWQ8 432 aa16.38■□□□□ 0.21
CLK3-203ENST00000454830 DDX49Q9Y6V7 483 aaKnown RBP16.38■□□□□ 0.21
CLK3-203ENST00000454830 BAG4O95429 457 aaKnown RBP16.38■□□□□ 0.21
CLK3-203ENST00000454830 WASHC4Q2M389 1173 aa16.38■□□□□ 0.21
CLK3-203ENST00000454830 IL6STP40189 918 aaPredicted RBP16.38■□□□□ 0.21
CLK3-203ENST00000454830 HELBQ8NG08 1087 aaPredicted RBP16.38■□□□□ 0.21
CLK3-203ENST00000454830 CHAMP1Q96JM3 812 aa16.38■□□□□ 0.21
CLK3-203ENST00000454830 SPATA31A5Q5VU36 1347 aa16.38■□□□□ 0.21
CLK3-203ENST00000454830 SPATA31A7Q8IWB4 1347 aa16.38■□□□□ 0.21
CLK3-203ENST00000454830 GTF2E1P29083 439 aaPredicted RBP16.37■□□□□ 0.21
CLK3-203ENST00000454830 DISP2A7MBM2 1401 aa16.37■□□□□ 0.21
CLK3-203ENST00000454830 ADORA1P30542 326 aa16.37■□□□□ 0.21
CLK3-203ENST00000454830 NAP1L2Q9ULW6 460 aaPredicted RBP16.37■□□□□ 0.21
CLK3-203ENST00000454830 AKAP2Q9Y2D5 859 aa16.37■□□□□ 0.21
CLK3-203ENST00000454830 HAUS7Q99871 368 aa16.37■□□□□ 0.21
CLK3-203ENST00000454830 NIP7Q9Y221 180 aaKnown RBP eCLIP16.36■□□□□ 0.21
CLK3-203ENST00000454830 TRIM28Q13263 835 aaKnown RBP16.36■□□□□ 0.21
CLK3-203ENST00000454830 CCDC83Q8IWF9 413 aa16.36■□□□□ 0.21
CLK3-203ENST00000454830 CTSWP56202 376 aa16.36■□□□□ 0.21
CLK3-203ENST00000454830 BLOC1S2Q6QNY1 142 aa16.36■□□□□ 0.21
CLK3-203ENST00000454830 XAGE2Q96GT9 111 aa16.36■□□□□ 0.21
CLK3-203ENST00000454830 LIMCH1Q9UPQ0 1083 aa16.36■□□□□ 0.21
CLK3-203ENST00000454830 LAMB4A4D0S4 1761 aa16.35■□□□□ 0.21
CLK3-203ENST00000454830 ATP2B3Q16720 1220 aa16.35■□□□□ 0.21
CLK3-203ENST00000454830 SMC3Q9UQE7 1217 aa16.35■□□□□ 0.21
CLK3-203ENST00000454830 SLC27A2O14975 620 aa16.35■□□□□ 0.21
CLK3-203ENST00000454830 NPHP1O15259 732 aa16.35■□□□□ 0.21
CLK3-203ENST00000454830 PSMA5P28066 241 aa16.35■□□□□ 0.21
CLK3-203ENST00000454830 TTLL11Q8NHH1 800 aa16.35■□□□□ 0.21
CLK3-203ENST00000454830 PHLPP1O60346 1717 aa16.35■□□□□ 0.21
CLK3-203ENST00000454830 PRPF40AO75400 957 aaKnown RBP16.35■□□□□ 0.21
CLK3-203ENST00000454830 ITPK1Q13572 414 aa16.35■□□□□ 0.21
CLK3-203ENST00000454830 SMIM5Q71RC9 77 aa16.35■□□□□ 0.21
CLK3-203ENST00000454830 KBTBD3Q8NAB2 608 aa16.35■□□□□ 0.21
CLK3-203ENST00000454830 PALLDQ8WX93 1383 aa16.35■□□□□ 0.21
CLK3-203ENST00000454830 TOGARAM1Q9Y4F4 1720 aa16.34■□□□□ 0.21
CLK3-203ENST00000454830 EPB41L2O43491 1005 aaKnown RBP16.34■□□□□ 0.21
CLK3-203ENST00000454830 MCMDC2Q4G0Z9 681 aa16.34■□□□□ 0.21
CLK3-203ENST00000454830 MPHOSPH8Q99549 860 aa16.34■□□□□ 0.21
CLK3-203ENST00000454830 HSP90B1P14625 803 aaKnown RBP16.34■□□□□ 0.21
CLK3-203ENST00000454830 STK3Q13188 491 aa16.34■□□□□ 0.21
CLK3-203ENST00000454830 MAP4K1Q92918 833 aa16.34■□□□□ 0.21
CLK3-203ENST00000454830 USP21Q9UK80 565 aa16.34■□□□□ 0.21
CLK3-203ENST00000454830 AHDC1Q5TGY3 1603 aaPredicted RBP16.33■□□□□ 0.21
CLK3-203ENST00000454830 GOLGA6L3A6NEY3 463 aa16.33■□□□□ 0.21
CLK3-203ENST00000454830 PDE8AO60658 829 aa16.33■□□□□ 0.21
CLK3-203ENST00000454830 NECAB1Q8N987 351 aa16.33■□□□□ 0.21
CLK3-203ENST00000454830 CIAO1O76071 339 aa16.33■□□□□ 0.2
CLK3-203ENST00000454830 SMARCC1Q92922 1105 aaPredicted RBP16.33■□□□□ 0.2
CLK3-203ENST00000454830 NECTIN1Q15223 517 aa16.33■□□□□ 0.2
CLK3-203ENST00000454830 PI16Q6UXB8 463 aa16.33■□□□□ 0.2
CLK3-203ENST00000454830 RUFY3Q7L099 469 aa16.33■□□□□ 0.2
CLK3-203ENST00000454830 UTP14AQ9BVJ6 771 aaKnown RBP16.33■□□□□ 0.2
CLK3-203ENST00000454830 SHANK3Q9BYB0 1731 aa16.33■□□□□ 0.2
CLK3-203ENST00000454830 COL15A1P39059 1388 aa16.33■□□□□ 0.2
CLK3-203ENST00000454830 GLI3P10071 1580 aa16.33■□□□□ 0.2
CLK3-203ENST00000454830 SH3TC1Q8TE82 1336 aa16.32■□□□□ 0.2
CLK3-203ENST00000454830 SUSD4Q5VX71 490 aa16.32■□□□□ 0.2
CLK3-203ENST00000454830 TAF5LO75529 589 aa16.32■□□□□ 0.2
CLK3-203ENST00000454830 EIF5P55010 431 aaKnown RBP16.32■□□□□ 0.2
CLK3-203ENST00000454830 SKOR2Q2VWA4 1001 aaPredicted RBP16.32■□□□□ 0.2
CLK3-203ENST00000454830 INTS5Q6P9B9 1019 aaKnown RBP16.32■□□□□ 0.2
CLK3-203ENST00000454830 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.32■□□□□ 0.2
CLK3-203ENST00000454830 TAF6LQ9Y6J9 622 aa16.32■□□□□ 0.2
CLK3-203ENST00000454830 UBN2Q6ZU65 1347 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms