RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 GRAPLQ8TC17 118 aaPredicted RBP16.3■□□□□ 0.2
PRPF40A-203ENST00000448428 NEURL1BA8MQ27 555 aa16.29■□□□□ 0.2
PRPF40A-203ENST00000448428 IARSP41252 1262 aaKnown RBP16.29■□□□□ 0.2
PRPF40A-203ENST00000448428 CDCA7LQ96GN5 454 aa16.29■□□□□ 0.2
PRPF40A-203ENST00000448428 HSP90B1P14625 803 aaKnown RBP16.28■□□□□ 0.2
PRPF40A-203ENST00000448428 DNAAF4Q8WXU2 420 aa16.28■□□□□ 0.2
PRPF40A-203ENST00000448428 CELF1Q92879 486 aaKnown RBP16.28■□□□□ 0.2
PRPF40A-203ENST00000448428 TMX4Q9H1E5 349 aaPredicted RBP16.28■□□□□ 0.2
PRPF40A-203ENST00000448428 PDE8AO60658 829 aa16.27■□□□□ 0.2
PRPF40A-203ENST00000448428 TOMM70O94826 608 aa16.27■□□□□ 0.2
PRPF40A-203ENST00000448428 COL4A1P02462 1669 aa16.27■□□□□ 0.19
PRPF40A-203ENST00000448428 CDHR2Q9BYE9 1310 aa16.26■□□□□ 0.19
PRPF40A-203ENST00000448428 POTECB2RU33 542 aa16.26■□□□□ 0.19
PRPF40A-203ENST00000448428 F6X3S4 739 aa16.26■□□□□ 0.19
PRPF40A-203ENST00000448428 H7C1W4 665 aa16.26■□□□□ 0.19
PRPF40A-203ENST00000448428 DDNO94850 711 aaPredicted RBP16.26■□□□□ 0.19
PRPF40A-203ENST00000448428 VEGFAP15692 232 aaPredicted RBP16.26■□□□□ 0.19
PRPF40A-203ENST00000448428 TRMT2AQ8IZ69 625 aaKnown RBP16.26■□□□□ 0.19
PRPF40A-203ENST00000448428 SEC31BQ9NQW1 1179 aa16.26■□□□□ 0.19
PRPF40A-203ENST00000448428 MYH3P11055 1940 aa16.25■□□□□ 0.19
PRPF40A-203ENST00000448428 WDR90Q96KV7 1748 aa16.25■□□□□ 0.19
PRPF40A-203ENST00000448428 RPS8P62241 208 aaKnown RBP16.25■□□□□ 0.19
PRPF40A-203ENST00000448428 GCKRQ14397 625 aa16.25■□□□□ 0.19
PRPF40A-203ENST00000448428 TMC4Q7Z404 712 aa16.25■□□□□ 0.19
PRPF40A-203ENST00000448428 C16orf71Q8IYS4 520 aaPredicted RBP16.25■□□□□ 0.19
PRPF40A-203ENST00000448428 MPNDQ8N594 471 aa16.25■□□□□ 0.19
PRPF40A-203ENST00000448428 LINS1Q8NG48 757 aa16.25■□□□□ 0.19
PRPF40A-203ENST00000448428 RTFDC1Q9BY42 306 aaPredicted RBP16.25■□□□□ 0.19
PRPF40A-203ENST00000448428 COL4A5P29400 1685 aa16.24■□□□□ 0.19
PRPF40A-203ENST00000448428 FZD9O00144 591 aa16.24■□□□□ 0.19
PRPF40A-203ENST00000448428 CCDC152Q4G0S7 254 aa16.24■□□□□ 0.19
PRPF40A-203ENST00000448428 DPP8Q6V1X1 898 aaPredicted RBP16.24■□□□□ 0.19
PRPF40A-203ENST00000448428 UBE3BQ7Z3V4 1068 aa16.24■□□□□ 0.19
PRPF40A-203ENST00000448428 JDP2Q8WYK2 163 aa16.24■□□□□ 0.19
PRPF40A-203ENST00000448428 CCDC85AQ96PX6 553 aaPredicted RBP16.24■□□□□ 0.19
PRPF40A-203ENST00000448428 LRRC37AA6NMS7 1700 aa16.24■□□□□ 0.19
PRPF40A-203ENST00000448428 ZNF541Q9H0D2 1346 aa16.23■□□□□ 0.19
PRPF40A-203ENST00000448428 BEND3Q5T5X7 828 aa16.23■□□□□ 0.19
PRPF40A-203ENST00000448428 LARGE2Q8N3Y3 721 aa16.23■□□□□ 0.19
PRPF40A-203ENST00000448428 MRPL50Q8N5N7 158 aaKnown RBP16.23■□□□□ 0.19
PRPF40A-203ENST00000448428 TTLL11Q8NHH1 800 aa16.23■□□□□ 0.19
PRPF40A-203ENST00000448428 VPS33BQ9H267 617 aa16.23■□□□□ 0.19
PRPF40A-203ENST00000448428 PPIP5K2O43314 1243 aa16.22■□□□□ 0.19
PRPF40A-203ENST00000448428 CASP7P55210 303 aa16.22■□□□□ 0.19
PRPF40A-203ENST00000448428 CTSWP56202 376 aa16.22■□□□□ 0.19
PRPF40A-203ENST00000448428 AOC3Q16853 763 aa16.22■□□□□ 0.19
PRPF40A-203ENST00000448428 SUPT20HQ8NEM7 779 aa16.22■□□□□ 0.19
PRPF40A-203ENST00000448428 RBM46Q8TBY0 533 aaKnown RBP16.22■□□□□ 0.19
PRPF40A-203ENST00000448428 GPSM2P81274 684 aa16.21■□□□□ 0.19
PRPF40A-203ENST00000448428 SSH1Q8WYL5 1049 aa16.21■□□□□ 0.19
PRPF40A-203ENST00000448428 NSFL1CQ9UNZ2 370 aaKnown RBP16.21■□□□□ 0.19
PRPF40A-203ENST00000448428 EIF6P56537 245 aaKnown RBP16.2■□□□□ 0.18
PRPF40A-203ENST00000448428 NIM1KQ8IY84 436 aa16.2■□□□□ 0.18
PRPF40A-203ENST00000448428 L3MBTL3Q96JM7 780 aaPredicted RBP16.2■□□□□ 0.18
PRPF40A-203ENST00000448428 PLA2G12BQ9BX93 195 aa16.2■□□□□ 0.18
PRPF40A-203ENST00000448428 GREM2Q9H772 168 aa16.2■□□□□ 0.18
PRPF40A-203ENST00000448428 SCN4AP35499 1836 aa16.19■□□□□ 0.18
PRPF40A-203ENST00000448428 DUOX1Q9NRD9 1551 aa16.19■□□□□ 0.18
PRPF40A-203ENST00000448428 HSPA6P17066 643 aa16.19■□□□□ 0.18
PRPF40A-203ENST00000448428 KIAA2012Q0VF49 1180 aa16.19■□□□□ 0.18
PRPF40A-203ENST00000448428 SLC4A10Q6U841 1118 aa16.19■□□□□ 0.18
PRPF40A-203ENST00000448428 POLLQ9UGP5 575 aa16.19■□□□□ 0.18
PRPF40A-203ENST00000448428 SPEF2Q9C093 1822 aa16.18■□□□□ 0.18
PRPF40A-203ENST00000448428 FSTL1Q12841 308 aa16.18■□□□□ 0.18
PRPF40A-203ENST00000448428 ALDH1L2Q3SY69 923 aa16.18■□□□□ 0.18
PRPF40A-203ENST00000448428 ANKRD18AQ8IVF6 992 aa16.18■□□□□ 0.18
PRPF40A-203ENST00000448428 GPC2Q8N158 579 aa16.18■□□□□ 0.18
PRPF40A-203ENST00000448428 BCL2L13Q9BXK5 485 aa16.18■□□□□ 0.18
PRPF40A-203ENST00000448428 ZNRF3Q9ULT6 936 aa16.18■□□□□ 0.18
PRPF40A-203ENST00000448428 LTBP1Q14766 1721 aa16.18■□□□□ 0.18
PRPF40A-203ENST00000448428 RTL9Q8NET4 1388 aa16.17■□□□□ 0.18
PRPF40A-203ENST00000448428 C6orf229H3BNL8 230 aa16.17■□□□□ 0.18
PRPF40A-203ENST00000448428 ALDH1L1O75891 902 aa16.17■□□□□ 0.18
PRPF40A-203ENST00000448428 CSF1RP07333 972 aa16.17■□□□□ 0.18
PRPF40A-203ENST00000448428 WASHC4Q2M389 1173 aa16.17■□□□□ 0.18
PRPF40A-203ENST00000448428 SMC1BQ8NDV3 1235 aa16.17■□□□□ 0.18
PRPF40A-203ENST00000448428 CDC5LQ99459 802 aaKnown RBP16.17■□□□□ 0.18
PRPF40A-203ENST00000448428 SRCIN1Q9C0H9 1055 aa16.17■□□□□ 0.18
PRPF40A-203ENST00000448428 GJA3Q9Y6H8 435 aa16.17■□□□□ 0.18
PRPF40A-203ENST00000448428 IQCA1LA6NCM1 817 aa16.16■□□□□ 0.18
PRPF40A-203ENST00000448428 GRM8O00222 908 aa16.16■□□□□ 0.18
PRPF40A-203ENST00000448428 RIMBP2O15034 1052 aa16.16■□□□□ 0.18
PRPF40A-203ENST00000448428 CT47B1P0C2W7 299 aaPredicted RBP16.16■□□□□ 0.18
PRPF40A-203ENST00000448428 FOXO4P98177 505 aa16.16■□□□□ 0.18
PRPF40A-203ENST00000448428 CXCL9Q07325 125 aa16.16■□□□□ 0.18
PRPF40A-203ENST00000448428 TBC1D16Q8TBP0 767 aa16.16■□□□□ 0.18
PRPF40A-203ENST00000448428 TAF1DQ9H5J8 278 aaPredicted RBP16.16■□□□□ 0.18
PRPF40A-203ENST00000448428 PODXL2Q9NZ53 605 aa16.16■□□□□ 0.18
PRPF40A-203ENST00000448428 C9orf78Q9NZ63 289 aaPredicted RBP16.16■□□□□ 0.18
PRPF40A-203ENST00000448428 ANKIB1Q9P2G1 1089 aa16.16■□□□□ 0.18
PRPF40A-203ENST00000448428 PTPRCP08575 1304 aa16.16■□□□□ 0.18
PRPF40A-203ENST00000448428 POTEIP0CG38 1075 aa16.15■□□□□ 0.18
PRPF40A-203ENST00000448428 POTEJP0CG39 1038 aa16.15■□□□□ 0.18
PRPF40A-203ENST00000448428 HNRNPUQ00839 825 aaKnown RBP eCLIP16.15■□□□□ 0.18
PRPF40A-203ENST00000448428 GPR101Q96P66 508 aaPredicted RBP16.15■□□□□ 0.18
PRPF40A-203ENST00000448428 SMC4Q9NTJ3 1288 aa16.15■□□□□ 0.18
PRPF40A-203ENST00000448428 BSDC1Q9NW68 430 aaPredicted RBP16.15■□□□□ 0.18
PRPF40A-203ENST00000448428 HACL1Q9UJ83 578 aa16.15■□□□□ 0.18
PRPF40A-203ENST00000448428 YDJCA8MPS7 323 aa16.14■□□□□ 0.17
PRPF40A-203ENST00000448428 ITGA6P23229 1130 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms