RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 PPIP5K2O43314 1243 aa26.76■■□□□ 1.87
SDC1-205ENST00000447124 DPP8Q6V1X1 898 aaPredicted RBP26.76■■□□□ 1.87
SDC1-205ENST00000447124 ZBTB38Q8NAP3 1195 aaPredicted RBP26.76■■□□□ 1.87
SDC1-205ENST00000447124 JARID2Q92833 1246 aaPredicted RBP26.76■■□□□ 1.87
SDC1-205ENST00000447124 METTL22Q9BUU2 404 aaPredicted RBP26.76■■□□□ 1.87
SDC1-205ENST00000447124 VPS33BQ9H267 617 aa26.76■■□□□ 1.87
SDC1-205ENST00000447124 GJA3Q9Y6H8 435 aa26.76■■□□□ 1.87
SDC1-205ENST00000447124 EPHX2P34913 555 aa26.75■■□□□ 1.87
SDC1-205ENST00000447124 TWISTNBQ3B726 338 aaPredicted RBP26.75■■□□□ 1.87
SDC1-205ENST00000447124 LDHDQ86WU2 507 aa26.75■■□□□ 1.87
SDC1-205ENST00000447124 CHMP4AQ9BY43 222 aa26.75■■□□□ 1.87
SDC1-205ENST00000447124 G2E3Q7L622 706 aa26.74■■□□□ 1.87
SDC1-205ENST00000447124 NIM1KQ8IY84 436 aa26.74■■□□□ 1.87
SDC1-205ENST00000447124 CCDC191Q8NCU4 936 aa26.74■■□□□ 1.87
SDC1-205ENST00000447124 SCN4AP35499 1836 aa26.74■■□□□ 1.87
SDC1-205ENST00000447124 DDX60Q8IY21 1712 aaKnown RBP26.73■■□□□ 1.87
SDC1-205ENST00000447124 EAPPQ56P03 285 aaPredicted RBP26.73■■□□□ 1.87
SDC1-205ENST00000447124 KSR2Q6VAB6 950 aa26.73■■□□□ 1.87
SDC1-205ENST00000447124 SUPT20HQ8NEM7 779 aa26.73■■□□□ 1.87
SDC1-205ENST00000447124 MAP3K2Q9Y2U5 619 aa26.73■■□□□ 1.87
SDC1-205ENST00000447124 PI4KAP2A4QPH2 592 aa26.72■■□□□ 1.87
SDC1-205ENST00000447124 DDX58O95786 925 aaKnown RBP26.72■■□□□ 1.87
SDC1-205ENST00000447124 WDR63Q8IWG1 891 aa26.72■■□□□ 1.87
SDC1-205ENST00000447124 PI4KAP1Q8N8J0 262 aa26.72■■□□□ 1.87
SDC1-205ENST00000447124 JMYQ8N9B5 988 aa26.72■■□□□ 1.87
SDC1-205ENST00000447124 ITGBL1O95965 494 aaPredicted RBP26.71■■□□□ 1.87
SDC1-205ENST00000447124 PCCAP05165 728 aaPredicted RBP26.71■■□□□ 1.87
SDC1-205ENST00000447124 IGKV5-2P06315 115 aa26.71■■□□□ 1.87
SDC1-205ENST00000447124 TMC4Q7Z404 712 aa26.71■■□□□ 1.87
SDC1-205ENST00000447124 CWC25Q9NXE8 425 aaPredicted RBP26.71■■□□□ 1.87
SDC1-205ENST00000447124 COL4A1P02462 1669 aa26.7■■□□□ 1.87
SDC1-205ENST00000447124 SLC4A2P04920 1241 aa26.7■■□□□ 1.86
SDC1-205ENST00000447124 EPS15P42566 896 aa26.7■■□□□ 1.86
SDC1-205ENST00000447124 SCNN1DP51172 638 aa26.7■■□□□ 1.86
SDC1-205ENST00000447124 CXCL9Q07325 125 aa26.7■■□□□ 1.86
SDC1-205ENST00000447124 KIAA2012Q0VF49 1180 aa26.7■■□□□ 1.86
SDC1-205ENST00000447124 FAM9BQ8IZU0 186 aa26.7■■□□□ 1.86
SDC1-205ENST00000447124 SPINK5Q9NQ38 1064 aaPredicted RBP26.7■■□□□ 1.86
SDC1-205ENST00000447124 SEC31BQ9NQW1 1179 aa26.7■■□□□ 1.86
SDC1-205ENST00000447124 ZNRF3Q9ULT6 936 aa26.7■■□□□ 1.86
SDC1-205ENST00000447124 CLEC11AQ9Y240 323 aa26.7■■□□□ 1.86
SDC1-205ENST00000447124 PASKQ96RG2 1323 aa26.69■■□□□ 1.86
SDC1-205ENST00000447124 FANCIQ9NVI1 1328 aa26.69■■□□□ 1.86
SDC1-205ENST00000447124 RPS8P62241 208 aaKnown RBP26.69■■□□□ 1.86
SDC1-205ENST00000447124 STK31Q9BXU1 1019 aa26.69■■□□□ 1.86
SDC1-205ENST00000447124 VAMP4O75379 141 aa26.68■■□□□ 1.86
SDC1-205ENST00000447124 PNMA8AQ86V59 439 aaPredicted RBP26.68■■□□□ 1.86
SDC1-205ENST00000447124 GPSM2P81274 684 aa26.67■■□□□ 1.86
SDC1-205ENST00000447124 NSFL1CQ9UNZ2 370 aaKnown RBP26.67■■□□□ 1.86
SDC1-205ENST00000447124 PDE8AO60658 829 aa26.66■■□□□ 1.86
SDC1-205ENST00000447124 MAP1SQ66K74 1059 aaPredicted RBP26.66■■□□□ 1.86
SDC1-205ENST00000447124 POLLQ9UGP5 575 aa26.66■■□□□ 1.86
SDC1-205ENST00000447124 LTBP1Q14766 1721 aa26.65■■□□□ 1.86
SDC1-205ENST00000447124 YDJCA8MPS7 323 aa26.65■■□□□ 1.86
SDC1-205ENST00000447124 EXOSC9Q06265 439 aaKnown RBP26.65■■□□□ 1.86
SDC1-205ENST00000447124 CCDC85AQ96PX6 553 aaPredicted RBP26.65■■□□□ 1.86
SDC1-205ENST00000447124 LMOD1P29536 600 aaPredicted RBP26.64■■□□□ 1.86
SDC1-205ENST00000447124 CWF19L2Q2TBE0 894 aaKnown RBP26.64■■□□□ 1.86
SDC1-205ENST00000447124 CNTROBQ8N137 903 aa26.64■■□□□ 1.86
SDC1-205ENST00000447124 CREBZFQ9NS37 354 aa26.64■■□□□ 1.86
SDC1-205ENST00000447124 DUOX1Q9NRD9 1551 aa26.63■■□□□ 1.85
SDC1-205ENST00000447124 RAD17O75943 681 aa26.63■■□□□ 1.85
SDC1-205ENST00000447124 HSP90B1P14625 803 aaKnown RBP26.63■■□□□ 1.85
SDC1-205ENST00000447124 ADAMTSL1Q8N6G6 1762 aa26.63■■□□□ 1.85
SDC1-205ENST00000447124 NEURL1BA8MQ27 555 aa26.62■■□□□ 1.85
SDC1-205ENST00000447124 WASHC4Q2M389 1173 aa26.62■■□□□ 1.85
SDC1-205ENST00000447124 CIAPIN1Q6FI81 312 aa26.62■■□□□ 1.85
SDC1-205ENST00000447124 GPRC5DQ9NZD1 345 aa26.62■■□□□ 1.85
SDC1-205ENST00000447124 CDHR2Q9BYE9 1310 aa26.62■■□□□ 1.85
SDC1-205ENST00000447124 C6orf229H3BNL8 230 aa26.61■■□□□ 1.85
SDC1-205ENST00000447124 RIMBP2O15034 1052 aa26.61■■□□□ 1.85
SDC1-205ENST00000447124 GMPSP49915 693 aaPredicted RBP26.61■■□□□ 1.85
SDC1-205ENST00000447124 FLIIQ13045 1269 aa26.61■■□□□ 1.85
SDC1-205ENST00000447124 CCDC152Q4G0S7 254 aa26.61■■□□□ 1.85
SDC1-205ENST00000447124 TBC1D16Q8TBP0 767 aa26.61■■□□□ 1.85
SDC1-205ENST00000447124 GPR101Q96P66 508 aaPredicted RBP26.61■■□□□ 1.85
SDC1-205ENST00000447124 H7C1W4 665 aa26.6■■□□□ 1.85
SDC1-205ENST00000447124 NEXNQ0ZGT2 675 aa26.6■■□□□ 1.85
SDC1-205ENST00000447124 LRRC37AA6NMS7 1700 aa26.59■■□□□ 1.85
SDC1-205ENST00000447124 USP50Q70EL3 339 aaPredicted RBP26.59■■□□□ 1.85
SDC1-205ENST00000447124 TTLL11Q8NHH1 800 aa26.59■■□□□ 1.85
SDC1-205ENST00000447124 TNIP1Q15025 636 aa26.58■■□□□ 1.85
SDC1-205ENST00000447124 DBNDD1Q9H9R9 158 aa26.58■■□□□ 1.85
SDC1-205ENST00000447124 KCNQ5Q9NR82 932 aa26.58■■□□□ 1.85
SDC1-205ENST00000447124 PODXL2Q9NZ53 605 aa26.58■■□□□ 1.85
SDC1-205ENST00000447124 MKRN1Q9UHC7 482 aaKnown RBP26.58■■□□□ 1.85
SDC1-205ENST00000447124 FMR1Q06787 632 aaKnown RBP eCLIP26.57■■□□□ 1.84
SDC1-205ENST00000447124 ADARB2Q9NS39 739 aaKnown RBP26.57■■□□□ 1.84
SDC1-205ENST00000447124 PCNTO95613 3336 aa26.57■■□□□ 1.84
SDC1-205ENST00000447124 SHTN1A0MZ66 631 aa26.56■■□□□ 1.84
SDC1-205ENST00000447124 TMEM88BA6NKF7 163 aa26.56■■□□□ 1.84
SDC1-205ENST00000447124 CTSWP56202 376 aa26.56■■□□□ 1.84
SDC1-205ENST00000447124 FKBP5Q13451 457 aaPredicted RBP26.56■■□□□ 1.84
SDC1-205ENST00000447124 GCKRQ14397 625 aa26.56■■□□□ 1.84
SDC1-205ENST00000447124 DOK7Q18PE1 504 aa26.56■■□□□ 1.84
SDC1-205ENST00000447124 DNAAF4Q8WXU2 420 aa26.56■■□□□ 1.84
SDC1-205ENST00000447124 CASP7P55210 303 aa26.55■■□□□ 1.84
SDC1-205ENST00000447124 EYA3Q99504 573 aa26.55■■□□□ 1.84
SDC1-205ENST00000447124 BCL2L13Q9BXK5 485 aa26.55■■□□□ 1.84
SDC1-205ENST00000447124 ZBTB12Q9Y330 459 aaPredicted RBP26.55■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms