RNA–Protein interactions for RNA: ENST00000430669.6

PTCH1-208, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,232 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-208ENST00000430669 REREQ9P2R6 1566 aa13.46□□□□□ -0.25
PTCH1-208ENST00000430669 ATP5J2-PTCD1G3V325 749 aa13.46□□□□□ -0.25
PTCH1-208ENST00000430669 HSP90AA2PQ14568 343 aaPredicted RBP13.46□□□□□ -0.25
PTCH1-208ENST00000430669 ZNF592Q92610 1267 aa13.46□□□□□ -0.25
PTCH1-208ENST00000430669 CCDC191Q8NCU4 936 aa13.46□□□□□ -0.25
PTCH1-208ENST00000430669 TNPO1Q92973 898 aaKnown RBP13.46□□□□□ -0.25
PTCH1-208ENST00000430669 SETDB2Q96T68 719 aa13.46□□□□□ -0.25
PTCH1-208ENST00000430669 MKNK2Q9HBH9 465 aa13.46□□□□□ -0.25
PTCH1-208ENST00000430669 KNDC1Q76NI1 1749 aa13.46□□□□□ -0.25
PTCH1-208ENST00000430669 INTS4Q96HW7 963 aaKnown RBP13.46□□□□□ -0.25
PTCH1-208ENST00000430669 KDRP35968 1356 aa13.46□□□□□ -0.25
PTCH1-208ENST00000430669 GOLGA8BA8MQT2 603 aa13.46□□□□□ -0.25
PTCH1-208ENST00000430669 UTP14AQ9BVJ6 771 aaKnown RBP13.46□□□□□ -0.25
PTCH1-208ENST00000430669 SSH2Q76I76 1423 aa13.46□□□□□ -0.26
PTCH1-208ENST00000430669 MFSD6Q6ZSS7 791 aa13.46□□□□□ -0.26
PTCH1-208ENST00000430669 CCDC85AQ96PX6 553 aaPredicted RBP13.46□□□□□ -0.26
PTCH1-208ENST00000430669 ACBD3Q9H3P7 528 aa13.46□□□□□ -0.26
PTCH1-208ENST00000430669 BICDL1Q6ZP65 573 aa13.45□□□□□ -0.26
PTCH1-208ENST00000430669 RNF214Q8ND24 703 aa13.45□□□□□ -0.26
PTCH1-208ENST00000430669 ZNHIT6Q9NWK9 470 aaKnown RBP13.45□□□□□ -0.26
PTCH1-208ENST00000430669 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.45□□□□□ -0.26
PTCH1-208ENST00000430669 PTPRMP28827 1452 aa13.45□□□□□ -0.26
PTCH1-208ENST00000430669 RBM5P52756 815 aaKnown RBP eCLIP13.45□□□□□ -0.26
PTCH1-208ENST00000430669 PAG1Q9NWQ8 432 aa13.45□□□□□ -0.26
PTCH1-208ENST00000430669 RAB34Q9BZG1 259 aa13.45□□□□□ -0.26
PTCH1-208ENST00000430669 CPSF1Q10570 1443 aaKnown RBP13.45□□□□□ -0.26
PTCH1-208ENST00000430669 GPTP24298 496 aa13.45□□□□□ -0.26
PTCH1-208ENST00000430669 ATP2B3Q16720 1220 aa13.45□□□□□ -0.26
PTCH1-208ENST00000430669 BICC1Q9H694 974 aaKnown RBP13.45□□□□□ -0.26
PTCH1-208ENST00000430669 DDX19AQ9NUU7 478 aaKnown RBP13.45□□□□□ -0.26
PTCH1-208ENST00000430669 CEP170BQ9Y4F5 1589 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-208ENST00000430669 SPINK5Q9NQ38 1064 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-208ENST00000430669 SERPINC1P01008 464 aa13.44□□□□□ -0.26
PTCH1-208ENST00000430669 BMP2KQ9NSY1 1161 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-208ENST00000430669 ANKRD18AQ8IVF6 992 aa13.44□□□□□ -0.26
PTCH1-208ENST00000430669 CRNKL1Q9BZJ0 848 aaKnown RBP13.44□□□□□ -0.26
PTCH1-208ENST00000430669 ANO10Q9NW15 660 aa13.44□□□□□ -0.26
PTCH1-208ENST00000430669 ZNF521Q96K83 1311 aa13.44□□□□□ -0.26
PTCH1-208ENST00000430669 POLR3DP05423 398 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-208ENST00000430669 NBPF6Q5VWK0 638 aa13.44□□□□□ -0.26
PTCH1-208ENST00000430669 NBPF5PQ86XG9 351 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-208ENST00000430669 NBPF4Q96M43 638 aa13.44□□□□□ -0.26
PTCH1-208ENST00000430669 UPF3BQ9BZI7 483 aaKnown RBP13.44□□□□□ -0.26
PTCH1-208ENST00000430669 TEX35Q5T0J7 233 aa13.44□□□□□ -0.26
PTCH1-208ENST00000430669 CERS3Q8IU89 383 aa13.43□□□□□ -0.26
PTCH1-208ENST00000430669 MYO6Q9UM54 1294 aa13.43□□□□□ -0.26
PTCH1-208ENST00000430669 GJB2P29033 226 aa13.43□□□□□ -0.26
PTCH1-208ENST00000430669 KANK3Q6NY19 840 aa13.43□□□□□ -0.26
PTCH1-208ENST00000430669 MINDY4BA8MYZ0 360 aa13.43□□□□□ -0.26
PTCH1-208ENST00000430669 ZNF444Q8N0Y2 327 aaPredicted RBP13.43□□□□□ -0.26
PTCH1-208ENST00000430669 PRM3Q9NNZ6 103 aa13.43□□□□□ -0.26
PTCH1-208ENST00000430669 PDILTQ8N807 584 aa13.43□□□□□ -0.26
PTCH1-208ENST00000430669 ERBB4Q15303 1308 aa13.43□□□□□ -0.26
PTCH1-208ENST00000430669 IFIT3O14879 490 aaKnown RBP13.43□□□□□ -0.26
PTCH1-208ENST00000430669 ATP2B2Q01814 1243 aa13.43□□□□□ -0.26
PTCH1-208ENST00000430669 PPFIBP1Q86W92 1011 aa13.43□□□□□ -0.26
PTCH1-208ENST00000430669 CCAR2Q8N163 923 aaKnown RBP13.43□□□□□ -0.26
PTCH1-208ENST00000430669 SLC39A6Q13433 755 aa13.42□□□□□ -0.26
PTCH1-208ENST00000430669 PARP10Q53GL7 1025 aa13.42□□□□□ -0.26
PTCH1-208ENST00000430669 MNS1Q8NEH6 495 aa13.42□□□□□ -0.26
PTCH1-208ENST00000430669 HELLSQ9NRZ9 838 aa13.42□□□□□ -0.26
PTCH1-208ENST00000430669 AKAP12Q02952 1782 aa13.42□□□□□ -0.26
PTCH1-208ENST00000430669 DZIP3Q86Y13 1208 aaKnown RBP13.42□□□□□ -0.26
PTCH1-208ENST00000430669 RBM25P49756 843 aaKnown RBP13.42□□□□□ -0.26
PTCH1-208ENST00000430669 KLHL40Q2TBA0 621 aa13.42□□□□□ -0.26
PTCH1-208ENST00000430669 BMP15O95972 392 aa13.42□□□□□ -0.26
PTCH1-208ENST00000430669 KRT18P05783 430 aaKnown RBP13.42□□□□□ -0.26
PTCH1-208ENST00000430669 TMEM67Q5HYA8 995 aa13.42□□□□□ -0.26
PTCH1-208ENST00000430669 ANKRD2Q9GZV1 360 aa13.42□□□□□ -0.26
PTCH1-208ENST00000430669 NRKQ7Z2Y5 1582 aa13.41□□□□□ -0.26
PTCH1-208ENST00000430669 IGSF1Q8N6C5 1336 aa13.41□□□□□ -0.26
PTCH1-208ENST00000430669 METAP2P50579 478 aaKnown RBP eCLIP13.41□□□□□ -0.26
PTCH1-208ENST00000430669 NLRP3Q96P20 1036 aa13.41□□□□□ -0.26
PTCH1-208ENST00000430669 SLAIN2Q9P270 581 aa13.41□□□□□ -0.26
PTCH1-208ENST00000430669 SYCE3A1L190 88 aa13.41□□□□□ -0.26
PTCH1-208ENST00000430669 UBR1Q8IWV7 1749 aa13.41□□□□□ -0.26
PTCH1-208ENST00000430669 KIF2AO00139 706 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-208ENST00000430669 ATL3Q6DD88 541 aa13.41□□□□□ -0.26
PTCH1-208ENST00000430669 TMX3Q96JJ7 454 aa13.41□□□□□ -0.26
PTCH1-208ENST00000430669 BAG4O95429 457 aaKnown RBP13.41□□□□□ -0.26
PTCH1-208ENST00000430669 FGFR1OPO95684 399 aaKnown RBP13.41□□□□□ -0.26
PTCH1-208ENST00000430669 ZSCAN22P10073 491 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-208ENST00000430669 EHMT1Q9H9B1 1298 aa13.41□□□□□ -0.26
PTCH1-208ENST00000430669 LMBR1LQ6UX01 489 aa13.4□□□□□ -0.26
PTCH1-208ENST00000430669 ZNF804AQ7Z570 1209 aa13.4□□□□□ -0.26
PTCH1-208ENST00000430669 DDX11Q96FC9 970 aa13.4□□□□□ -0.26
PTCH1-208ENST00000430669 ORAI2Q96SN7 254 aa13.4□□□□□ -0.26
PTCH1-208ENST00000430669 MTMR7Q9Y216 660 aa13.4□□□□□ -0.26
PTCH1-208ENST00000430669 RBM27Q9P2N5 1060 aaKnown RBP13.4□□□□□ -0.26
PTCH1-208ENST00000430669 RBM8AQ9Y5S9 174 aaKnown RBP13.4□□□□□ -0.26
PTCH1-208ENST00000430669 KIF1AQ12756 1690 aa13.4□□□□□ -0.26
PTCH1-208ENST00000430669 OFD1O75665 1012 aa13.4□□□□□ -0.26
PTCH1-208ENST00000430669 BTG4Q9NY30 223 aa13.4□□□□□ -0.26
PTCH1-208ENST00000430669 RTL9Q8NET4 1388 aa13.4□□□□□ -0.26
PTCH1-208ENST00000430669 ZSCAN29Q8IWY8 852 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-208ENST00000430669 CCDC171Q6TFL3 1326 aa13.4□□□□□ -0.26
PTCH1-208ENST00000430669 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-208ENST00000430669 SSFA2P28290 1259 aa13.4□□□□□ -0.26
PTCH1-208ENST00000430669 AFDNP55196 1824 aaKnown RBP13.4□□□□□ -0.27
PTCH1-208ENST00000430669 ATP2B1P20020 1258 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms