RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 IFNKQ9P0W0 207 aa12.75□□□□□ -0.37
HPS4-202ENST00000398145 KANK3Q6NY19 840 aa12.75□□□□□ -0.37
HPS4-202ENST00000398145 CBX8Q9HC52 389 aa12.75□□□□□ -0.37
HPS4-202ENST00000398145 PA2G4Q9UQ80 394 aaKnown RBP12.75□□□□□ -0.37
HPS4-202ENST00000398145 AOX1Q06278 1338 aa12.75□□□□□ -0.37
HPS4-202ENST00000398145 RTL1A6NKG5 1358 aa12.75□□□□□ -0.37
HPS4-202ENST00000398145 KLF18A0A0U1RQI7 1052 aa12.75□□□□□ -0.37
HPS4-202ENST00000398145 HSPA4P34932 840 aa12.75□□□□□ -0.37
HPS4-202ENST00000398145 ZNF75DP51815 510 aa12.75□□□□□ -0.37
HPS4-202ENST00000398145 NCOA7Q8NI08 942 aa12.75□□□□□ -0.37
HPS4-202ENST00000398145 PHAXQ9H814 394 aaKnown RBP12.75□□□□□ -0.37
HPS4-202ENST00000398145 PPIP5K1Q6PFW1 1433 aa12.75□□□□□ -0.37
HPS4-202ENST00000398145 RIMS2Q9UQ26 1411 aa12.75□□□□□ -0.37
HPS4-202ENST00000398145 SPTLC2O15270 562 aa12.74□□□□□ -0.37
HPS4-202ENST00000398145 CALRP27797 417 aaKnown RBP12.74□□□□□ -0.37
HPS4-202ENST00000398145 KIF24Q5T7B8 1368 aa12.74□□□□□ -0.37
HPS4-202ENST00000398145 IFIT3O14879 490 aaKnown RBP12.74□□□□□ -0.37
HPS4-202ENST00000398145 IL13P35225 146 aa12.74□□□□□ -0.37
HPS4-202ENST00000398145 SSRP1Q08945 709 aaKnown RBP12.74□□□□□ -0.37
HPS4-202ENST00000398145 MICU3Q86XE3 530 aa12.74□□□□□ -0.37
HPS4-202ENST00000398145 FOXO3O43524 673 aa12.74□□□□□ -0.37
HPS4-202ENST00000398145 LRP2BPQ9P2M1 347 aa12.74□□□□□ -0.37
HPS4-202ENST00000398145 NPATQ14207 1427 aa12.74□□□□□ -0.37
HPS4-202ENST00000398145 IVLP07476 585 aa12.74□□□□□ -0.37
HPS4-202ENST00000398145 KSR2Q6VAB6 950 aa12.74□□□□□ -0.37
HPS4-202ENST00000398145 CLSTN2Q9H4D0 955 aa12.74□□□□□ -0.37
HPS4-202ENST00000398145 PAFAH1B1P43034 410 aa12.73□□□□□ -0.37
HPS4-202ENST00000398145 METAP2P50579 478 aaKnown RBP eCLIP12.73□□□□□ -0.37
HPS4-202ENST00000398145 ATL3Q6DD88 541 aa12.73□□□□□ -0.37
HPS4-202ENST00000398145 RAB11FIP4Q86YS3 637 aa12.73□□□□□ -0.37
HPS4-202ENST00000398145 FAM160A1Q05DH4 1040 aa12.73□□□□□ -0.37
HPS4-202ENST00000398145 LINS1Q8NG48 757 aa12.73□□□□□ -0.37
HPS4-202ENST00000398145 CHAMP1Q96JM3 812 aa12.73□□□□□ -0.37
HPS4-202ENST00000398145 SNRKQ9NRH2 765 aa12.73□□□□□ -0.37
HPS4-202ENST00000398145 KDM5DQ9BY66 1539 aa12.73□□□□□ -0.37
HPS4-202ENST00000398145 ZC3H6P61129 1189 aaKnown RBP12.73□□□□□ -0.37
HPS4-202ENST00000398145 HSP90AA4PQ58FG1 418 aa12.73□□□□□ -0.37
HPS4-202ENST00000398145 SBNO2Q9Y2G9 1366 aa12.73□□□□□ -0.37
HPS4-202ENST00000398145 KRT18P05783 430 aaKnown RBP12.72□□□□□ -0.37
HPS4-202ENST00000398145 CTR9Q6PD62 1173 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 GTF3C6Q969F1 213 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 WDR7Q9Y4E6 1490 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 PNMA6EA0A0J9YXQ4 647 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 PTPDC1A2A3K4 754 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 GOLGA1Q92805 767 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 RBM33Q96EV2 1170 aaKnown RBP12.72□□□□□ -0.37
HPS4-202ENST00000398145 AMOTL2Q9Y2J4 779 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 GOLGA6L7A0A1B0GV03 622 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 CTAGE15A4D2H0 777 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 CTAGE8P0CG41 777 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 MARCKSP29966 332 aaPredicted RBP12.72□□□□□ -0.37
HPS4-202ENST00000398145 CTAGE6Q86UF2 777 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 CTAGE4Q8IX94 777 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 LEO1Q8WVC0 666 aaPredicted RBP12.72□□□□□ -0.37
HPS4-202ENST00000398145 TAF4BQ92750 862 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 MBD5Q9P267 1494 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 MAST1Q9Y2H9 1570 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 N4BP3O15049 544 aa12.72□□□□□ -0.37
HPS4-202ENST00000398145 USO1O60763 962 aaKnown RBP12.72□□□□□ -0.37
HPS4-202ENST00000398145 IFIT5Q13325 482 aaKnown RBP12.72□□□□□ -0.37
HPS4-202ENST00000398145 DHX32Q7L7V1 743 aaKnown RBP12.72□□□□□ -0.37
HPS4-202ENST00000398145 CCDC175P0C221 793 aa12.71□□□□□ -0.37
HPS4-202ENST00000398145 CAPN2P17655 700 aa12.71□□□□□ -0.37
HPS4-202ENST00000398145 ALG1Q9BT22 464 aa12.71□□□□□ -0.37
HPS4-202ENST00000398145 TTC21AQ8NDW8 1320 aa12.71□□□□□ -0.37
HPS4-202ENST00000398145 ATP5J2-PTCD1G3V325 749 aa12.71□□□□□ -0.37
HPS4-202ENST00000398145 PTCD1O75127 700 aaKnown RBP12.71□□□□□ -0.37
HPS4-202ENST00000398145 FKBP15Q5T1M5 1219 aa12.71□□□□□ -0.37
HPS4-202ENST00000398145 PALD1Q9ULE6 856 aa12.71□□□□□ -0.37
HPS4-202ENST00000398145 ERBB4Q15303 1308 aa12.71□□□□□ -0.38
HPS4-202ENST00000398145 TMEM67Q5HYA8 995 aa12.71□□□□□ -0.38
HPS4-202ENST00000398145 SOGA3Q5TF21 947 aa12.71□□□□□ -0.38
HPS4-202ENST00000398145 ANKRD13DQ6ZTN6 518 aa12.71□□□□□ -0.38
HPS4-202ENST00000398145 BMP2KQ9NSY1 1161 aaPredicted RBP12.71□□□□□ -0.38
HPS4-202ENST00000398145 ELF2Q15723 593 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 PROSER2Q86WR7 435 aaPredicted RBP12.7□□□□□ -0.38
HPS4-202ENST00000398145 CCDC144CPQ8IYA2 1237 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 PHF8Q9UPP1 1060 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 MINDY4BA8MYZ0 360 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 RPS6KB1P23443 525 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 TUBB4BP68371 445 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 MAP3K12Q12852 859 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 CEP112Q8N8E3 955 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 ANKRD24Q8TF21 1146 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 UTP14AQ9BVJ6 771 aaKnown RBP12.7□□□□□ -0.38
HPS4-202ENST00000398145 ABCF2Q9UG63 623 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 ABCC1P33527 1531 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 ADGBQ8N7X0 1667 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 ZFYP08048 801 aaPredicted RBP12.7□□□□□ -0.38
HPS4-202ENST00000398145 LIG1P18858 919 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 APOBRQ0VD83 1088 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 TOM1L2Q6ZVM7 507 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 ZFP91Q96JP5 570 aaPredicted RBP12.7□□□□□ -0.38
HPS4-202ENST00000398145 SLC26A6Q9BXS9 759 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 TM6SF1Q9BZW5 370 aa12.7□□□□□ -0.38
HPS4-202ENST00000398145 RNF41Q9H4P4 317 aaPredicted RBP12.7□□□□□ -0.38
HPS4-202ENST00000398145 EVCP57679 992 aa12.69□□□□□ -0.38
HPS4-202ENST00000398145 JARID2Q92833 1246 aaPredicted RBP12.69□□□□□ -0.38
HPS4-202ENST00000398145 CCDC43Q96MW1 224 aaKnown RBP12.69□□□□□ -0.38
HPS4-202ENST00000398145 CTAGE1Q96RT6 745 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms