RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 JCADQ9P266 1359 aa24.97■■□□□ 1.59
UPF3A-202ENST00000375299 SASH1O94885 1247 aa24.97■■□□□ 1.59
UPF3A-202ENST00000375299 EAF2Q96CJ1 260 aaPredicted RBP24.97■■□□□ 1.59
UPF3A-202ENST00000375299 LMO7Q8WWI1 1683 aa24.97■■□□□ 1.59
UPF3A-202ENST00000375299 FSD1Q9BTV5 496 aa24.96■■□□□ 1.59
UPF3A-202ENST00000375299 HMG20BQ9P0W2 317 aa24.96■■□□□ 1.59
UPF3A-202ENST00000375299 TAF6LQ9Y6J9 622 aa24.96■■□□□ 1.59
UPF3A-202ENST00000375299 GIGYF1O75420 1035 aaPredicted RBP24.96■■□□□ 1.59
UPF3A-202ENST00000375299 CAVIN2O95810 425 aa24.96■■□□□ 1.59
UPF3A-202ENST00000375299 STK3Q13188 491 aa24.96■■□□□ 1.59
UPF3A-202ENST00000375299 CACTINQ8WUQ7 758 aaKnown RBP24.96■■□□□ 1.59
UPF3A-202ENST00000375299 CCDC8Q9H0W5 538 aaPredicted RBP24.96■■□□□ 1.59
UPF3A-202ENST00000375299 OGFRQ9NZT2 677 aa24.96■■□□□ 1.59
UPF3A-202ENST00000375299 NBPF6Q5VWK0 638 aa24.95■■□□□ 1.59
UPF3A-202ENST00000375299 NBPF4Q96M43 638 aa24.95■■□□□ 1.59
UPF3A-202ENST00000375299 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.95■■□□□ 1.59
UPF3A-202ENST00000375299 NFAT5O94916 1531 aa24.95■■□□□ 1.58
UPF3A-202ENST00000375299 BTBD11A6QL63 1104 aa24.95■■□□□ 1.58
UPF3A-202ENST00000375299 TSGA10IPQ3SY00 556 aa24.95■■□□□ 1.58
UPF3A-202ENST00000375299 RESTQ13127 1097 aa24.94■■□□□ 1.58
UPF3A-202ENST00000375299 G3BP1Q13283 466 aaKnown RBP eCLIP24.94■■□□□ 1.58
UPF3A-202ENST00000375299 TPD52L1Q16890 204 aaPredicted RBP24.94■■□□□ 1.58
UPF3A-202ENST00000375299 CCDC144BQ3MJ40 725 aa24.94■■□□□ 1.58
UPF3A-202ENST00000375299 KSR2Q6VAB6 950 aa24.94■■□□□ 1.58
UPF3A-202ENST00000375299 CCDC144CPQ8IYA2 1237 aa24.94■■□□□ 1.58
UPF3A-202ENST00000375299 CCDC112Q8NEF3 446 aa24.94■■□□□ 1.58
UPF3A-202ENST00000375299 TEFQ10587 303 aa24.94■■□□□ 1.58
UPF3A-202ENST00000375299 CWF19L2Q2TBE0 894 aaKnown RBP24.94■■□□□ 1.58
UPF3A-202ENST00000375299 CGNQ9P2M7 1197 aaKnown RBP24.94■■□□□ 1.58
UPF3A-202ENST00000375299 CTNNA3Q9UI47 895 aa24.94■■□□□ 1.58
UPF3A-202ENST00000375299 BOLA2Q9H3K6 86 aa24.93■■□□□ 1.58
UPF3A-202ENST00000375299 TLR7Q9NYK1 1049 aaKnown RBP24.93■■□□□ 1.58
UPF3A-202ENST00000375299 GTF3C6Q969F1 213 aa24.93■■□□□ 1.58
UPF3A-202ENST00000375299 SARM1Q6SZW1 724 aa24.92■■□□□ 1.58
UPF3A-202ENST00000375299 SUCLG2Q96I99 432 aa24.92■■□□□ 1.58
UPF3A-202ENST00000375299 JAK2O60674 1132 aa24.91■■□□□ 1.58
UPF3A-202ENST00000375299 ZNF589Q86UQ0 364 aaPredicted RBP24.91■■□□□ 1.58
UPF3A-202ENST00000375299 MYH15Q9Y2K3 1946 aa24.91■■□□□ 1.58
UPF3A-202ENST00000375299 BRF1Q92994 677 aa24.91■■□□□ 1.58
UPF3A-202ENST00000375299 IQCB1Q15051 598 aa24.9■■□□□ 1.58
UPF3A-202ENST00000375299 KAZALD1Q96I82 304 aa24.9■■□□□ 1.58
UPF3A-202ENST00000375299 GOLGA6L19H0YKK7 550 aa24.9■■□□□ 1.58
UPF3A-202ENST00000375299 GRM8O00222 908 aa24.9■■□□□ 1.58
UPF3A-202ENST00000375299 KRT32Q14532 448 aa24.9■■□□□ 1.58
UPF3A-202ENST00000375299 PROSER3Q2NL68 480 aa24.9■■□□□ 1.58
UPF3A-202ENST00000375299 BICC1Q9H694 974 aaKnown RBP24.9■■□□□ 1.58
UPF3A-202ENST00000375299 UTYO14607 1347 aa24.89■■□□□ 1.58
UPF3A-202ENST00000375299 AKAP4Q5JQC9 854 aa24.89■■□□□ 1.58
UPF3A-202ENST00000375299 CEP135Q66GS9 1140 aa24.89■■□□□ 1.58
UPF3A-202ENST00000375299 LRRC8AQ8IWT6 810 aa24.89■■□□□ 1.58
UPF3A-202ENST00000375299 RBM33Q96EV2 1170 aaKnown RBP24.89■■□□□ 1.58
UPF3A-202ENST00000375299 ZSCAN16Q9H4T2 348 aaPredicted RBP24.89■■□□□ 1.58
UPF3A-202ENST00000375299 MRFAP1L1Q96HT8 127 aa24.89■■□□□ 1.57
UPF3A-202ENST00000375299 CFAP45Q9UL16 551 aa24.89■■□□□ 1.57
UPF3A-202ENST00000375299 SETD1BQ9UPS6 1966 aaKnown RBP24.88■■□□□ 1.57
UPF3A-202ENST00000375299 NEMFO60524 1076 aa24.88■■□□□ 1.57
UPF3A-202ENST00000375299 TAF5LO75529 589 aa24.88■■□□□ 1.57
UPF3A-202ENST00000375299 USPL1Q5W0Q7 1092 aa24.88■■□□□ 1.57
UPF3A-202ENST00000375299 LINS1Q8NG48 757 aa24.88■■□□□ 1.57
UPF3A-202ENST00000375299 H3BQV1 296 aa24.88■■□□□ 1.57
UPF3A-202ENST00000375299 NAA30Q147X3 362 aaPredicted RBP24.88■■□□□ 1.57
UPF3A-202ENST00000375299 IFFO2Q5TF58 517 aa24.88■■□□□ 1.57
UPF3A-202ENST00000375299 MRC1P22897 1456 aa24.87■■□□□ 1.57
UPF3A-202ENST00000375299 RGPD2P0DJD1 1756 aa24.87■■□□□ 1.57
UPF3A-202ENST00000375299 RBM6P78332 1123 aaKnown RBP24.87■■□□□ 1.57
UPF3A-202ENST00000375299 DDX41Q9UJV9 622 aaKnown RBP24.87■■□□□ 1.57
UPF3A-202ENST00000375299 PSME1Q06323 249 aa24.87■■□□□ 1.57
UPF3A-202ENST00000375299 ZNF530Q6P9A1 599 aaPredicted RBP24.87■■□□□ 1.57
UPF3A-202ENST00000375299 C11orf57Q6ZUT1 292 aaPredicted RBP24.87■■□□□ 1.57
UPF3A-202ENST00000375299 KCNH5Q8NCM2 988 aa24.87■■□□□ 1.57
UPF3A-202ENST00000375299 CTAGE5O15320 804 aa24.86■■□□□ 1.57
UPF3A-202ENST00000375299 STX1AQ16623 288 aa24.86■■□□□ 1.57
UPF3A-202ENST00000375299 NEK1Q96PY6 1258 aa24.86■■□□□ 1.57
UPF3A-202ENST00000375299 MPRIPQ6WCQ1 1025 aa24.86■■□□□ 1.57
UPF3A-202ENST00000375299 DDX11Q96FC9 970 aa24.86■■□□□ 1.57
UPF3A-202ENST00000375299 ESCO1Q5FWF5 840 aa24.85■■□□□ 1.57
UPF3A-202ENST00000375299 SIL1Q9H173 461 aa24.85■■□□□ 1.57
UPF3A-202ENST00000375299 PHRF1Q9P1Y6 1649 aaKnown RBP24.85■■□□□ 1.57
UPF3A-202ENST00000375299 Q6ZUG5 572 aa24.85■■□□□ 1.57
UPF3A-202ENST00000375299 ANKLE2Q86XL3 938 aa24.85■■□□□ 1.57
UPF3A-202ENST00000375299 ZNF592Q92610 1267 aa24.85■■□□□ 1.57
UPF3A-202ENST00000375299 LRRC59Q96AG4 307 aaKnown RBP24.85■■□□□ 1.57
UPF3A-202ENST00000375299 HSP90B1P14625 803 aaKnown RBP24.84■■□□□ 1.57
UPF3A-202ENST00000375299 GABPB1Q06547 395 aaPredicted RBP24.84■■□□□ 1.57
UPF3A-202ENST00000375299 COL15A1P39059 1388 aa24.84■■□□□ 1.57
UPF3A-202ENST00000375299 HEG1Q9ULI3 1381 aa24.84■■□□□ 1.57
UPF3A-202ENST00000375299 NYAP1Q6ZVC0 841 aa24.83■■□□□ 1.57
UPF3A-202ENST00000375299 USP27XA6NNY8 438 aa24.83■■□□□ 1.57
UPF3A-202ENST00000375299 RNMTO43148 476 aaKnown RBP24.83■■□□□ 1.57
UPF3A-202ENST00000375299 ARID5BQ14865 1188 aa24.83■■□□□ 1.57
UPF3A-202ENST00000375299 NCAPD2Q15021 1401 aa24.83■■□□□ 1.57
UPF3A-202ENST00000375299 PLEKHO1Q53GL0 409 aaPredicted RBP24.82■■□□□ 1.56
UPF3A-202ENST00000375299 SMARCC2Q8TAQ2 1214 aa24.82■■□□□ 1.56
UPF3A-202ENST00000375299 MORC2Q9Y6X9 1032 aaPredicted RBP24.82■■□□□ 1.56
UPF3A-202ENST00000375299 IGSF3O75054 1194 aa24.82■■□□□ 1.56
UPF3A-202ENST00000375299 PTPN14Q15678 1187 aa24.82■■□□□ 1.56
UPF3A-202ENST00000375299 CCAR1Q8IX12 1150 aaKnown RBP24.82■■□□□ 1.56
UPF3A-202ENST00000375299 DDX58O95786 925 aaKnown RBP24.81■■□□□ 1.56
UPF3A-202ENST00000375299 ADD1P35611 737 aaKnown RBP24.81■■□□□ 1.56
UPF3A-202ENST00000375299 KIF18AQ8NI77 898 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms