RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 ST5P78524 1137 aa13.18□□□□□ -0.3
VCL-202ENST00000372755 SELENOOQ9BVL4 669 aa13.18□□□□□ -0.3
VCL-202ENST00000372755 CNNM2Q9H8M5 875 aa13.18□□□□□ -0.3
VCL-202ENST00000372755 GTF2F1P35269 517 aaKnown RBP eCLIP13.18□□□□□ -0.38e-7■■■■■ 61.7
VCL-202ENST00000372755 TTC22Q5TAA0 569 aa13.18□□□□□ -0.3
VCL-202ENST00000372755 TRIM27P14373 513 aa13.18□□□□□ -0.3
VCL-202ENST00000372755 ZGPATQ8N5A5 531 aaKnown RBP13.18□□□□□ -0.3
VCL-202ENST00000372755 IQCGQ9H095 443 aaKnown RBP13.18□□□□□ -0.3
VCL-202ENST00000372755 HAND2P61296 217 aa13.18□□□□□ -0.3
VCL-202ENST00000372755 CCDC152Q4G0S7 254 aa13.18□□□□□ -0.3
VCL-202ENST00000372755 NAIPQ13075 1403 aa13.17□□□□□ -0.3
VCL-202ENST00000372755 STAT6P42226 847 aa13.17□□□□□ -0.3
VCL-202ENST00000372755 GNAQP50148 359 aa13.17□□□□□ -0.3
VCL-202ENST00000372755 CCDC77Q9BR77 488 aa13.17□□□□□ -0.3
VCL-202ENST00000372755 SNRKQ9NRH2 765 aa13.17□□□□□ -0.3
VCL-202ENST00000372755 ADAMTS2O95450 1211 aa13.17□□□□□ -0.3
VCL-202ENST00000372755 KCNG4Q8TDN1 519 aa13.17□□□□□ -0.3
VCL-202ENST00000372755 FBF1Q8TES7 1133 aa13.17□□□□□ -0.3
VCL-202ENST00000372755 PSMD1Q99460 953 aa13.17□□□□□ -0.3
VCL-202ENST00000372755 TSPY3P0CV98 308 aa13.17□□□□□ -0.3
VCL-202ENST00000372755 TSPY8P0CW00 308 aa13.17□□□□□ -0.3
VCL-202ENST00000372755 PRIMPOLQ96LW4 560 aa13.17□□□□□ -0.3
VCL-202ENST00000372755 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.17□□□□□ -0.3
VCL-202ENST00000372755 TRMT1LQ7Z2T5 733 aaKnown RBP13.17□□□□□ -0.3
VCL-202ENST00000372755 LARP6Q9BRS8 491 aaKnown RBP13.17□□□□□ -0.3
VCL-202ENST00000372755 DDX23Q9BUQ8 820 aaKnown RBP13.17□□□□□ -0.3
VCL-202ENST00000372755 STMN4Q9H169 189 aaPredicted RBP13.17□□□□□ -0.3
VCL-202ENST00000372755 GDPD2Q9HCC8 539 aa13.17□□□□□ -0.3
VCL-202ENST00000372755 TIAM1Q13009 1591 aa13.17□□□□□ -0.3
VCL-202ENST00000372755 SNRPA1P09661 255 aaKnown RBP13.16□□□□□ -0.3
VCL-202ENST00000372755 UBASH3AP57075 661 aa13.16□□□□□ -0.3
VCL-202ENST00000372755 ESR2Q92731 530 aa13.16□□□□□ -0.3
VCL-202ENST00000372755 MMRN2Q9H8L6 949 aa13.16□□□□□ -0.3
VCL-202ENST00000372755 KLF18A0A0U1RQI7 1052 aa13.16□□□□□ -0.3
VCL-202ENST00000372755 ZBTB43O43298 467 aa13.16□□□□□ -0.3
VCL-202ENST00000372755 ZSCAN22P10073 491 aaPredicted RBP13.16□□□□□ -0.3
VCL-202ENST00000372755 C20orf194Q5TEA3 1177 aa13.16□□□□□ -0.3
VCL-202ENST00000372755 CTAGE15A4D2H0 777 aa13.16□□□□□ -0.3
VCL-202ENST00000372755 PHACTR2O75167 634 aa13.16□□□□□ -0.3
VCL-202ENST00000372755 CTAGE8P0CG41 777 aa13.16□□□□□ -0.3
VCL-202ENST00000372755 IL16Q14005 1332 aa13.16□□□□□ -0.3
VCL-202ENST00000372755 UBE3BQ7Z3V4 1068 aa13.16□□□□□ -0.3
VCL-202ENST00000372755 CTAGE6Q86UF2 777 aa13.16□□□□□ -0.3
VCL-202ENST00000372755 CTAGE4Q8IX94 777 aa13.16□□□□□ -0.3
VCL-202ENST00000372755 KLHL40Q2TBA0 621 aa13.15□□□□□ -0.3
VCL-202ENST00000372755 NGLY1Q96IV0 654 aa13.15□□□□□ -0.3
VCL-202ENST00000372755 PRDM10Q9NQV6 1147 aa13.15□□□□□ -0.3
VCL-202ENST00000372755 IFIT1BQ5T764 474 aaKnown RBP13.15□□□□□ -0.3
VCL-202ENST00000372755 LMBR1Q8WVP7 490 aa13.15□□□□□ -0.3
VCL-202ENST00000372755 AMOTL2Q9Y2J4 779 aa13.15□□□□□ -0.3
VCL-202ENST00000372755 FAM135AQ9P2D6 1515 aa13.15□□□□□ -0.3
VCL-202ENST00000372755 RFC4P35249 363 aa13.15□□□□□ -0.3
VCL-202ENST00000372755 ISM2Q6H9L7 571 aa13.15□□□□□ -0.3
VCL-202ENST00000372755 HSPA4P34932 840 aa13.15□□□□□ -0.3
VCL-202ENST00000372755 RAB3IL1Q8TBN0 382 aa13.15□□□□□ -0.31
VCL-202ENST00000372755 HDAC9Q9UKV0 1011 aa13.15□□□□□ -0.31
VCL-202ENST00000372755 ATP5J2-PTCD1G3V325 749 aa13.14□□□□□ -0.31
VCL-202ENST00000372755 TUBB4AP04350 444 aa13.14□□□□□ -0.31
VCL-202ENST00000372755 GTPBP4Q9BZE4 634 aaKnown RBP13.14□□□□□ -0.31
VCL-202ENST00000372755 ATP2A1O14983 1001 aa13.14□□□□□ -0.31
VCL-202ENST00000372755 ZNF622Q969S3 477 aaKnown RBP eCLIP13.14□□□□□ -0.31
VCL-202ENST00000372755 ALG1Q9BT22 464 aa13.14□□□□□ -0.31
VCL-202ENST00000372755 STX8Q9UNK0 236 aa13.14□□□□□ -0.31
VCL-202ENST00000372755 KIF4AO95239 1232 aa13.14□□□□□ -0.31
VCL-202ENST00000372755 MRPS9P82933 396 aaKnown RBP13.14□□□□□ -0.31
VCL-202ENST00000372755 RTN1Q16799 776 aa13.14□□□□□ -0.31
VCL-202ENST00000372755 PSMA7O14818 248 aa13.14□□□□□ -0.31
VCL-202ENST00000372755 FOXO3O43524 673 aa13.14□□□□□ -0.31
VCL-202ENST00000372755 TACC1O75410 805 aa13.14□□□□□ -0.31
VCL-202ENST00000372755 BRF1Q92994 677 aa13.14□□□□□ -0.31
VCL-202ENST00000372755 IMPG2Q9BZV3 1241 aa13.14□□□□□ -0.31
VCL-202ENST00000372755 RAB11FIP4Q86YS3 637 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 MRPS27Q92552 414 aaKnown RBP13.13□□□□□ -0.31
VCL-202ENST00000372755 SNAPC4Q5SXM2 1469 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 PI4KAP2A4QPH2 592 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 DYNC1I1O14576 645 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 OPA1O60313 960 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 NBPF6Q5VWK0 638 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 LRSAM1Q6UWE0 723 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 KRT28Q7Z3Y7 464 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 NBPF5PQ86XG9 351 aaPredicted RBP13.13□□□□□ -0.31
VCL-202ENST00000372755 PI4KAP1Q8N8J0 262 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 NBPF4Q96M43 638 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 CYP7A1P22680 504 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 MXRA7P84157 204 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 ZNF354CQ86Y25 554 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 TTC14Q96N46 770 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 SLC4A4Q9Y6R1 1079 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 WDR97A6NE52 1622 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 AFMP43652 599 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 ZSCAN23Q3MJ62 389 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 RHPN1Q8TCX5 695 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 CFAP57Q96MR6 1250 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 MBIPQ9NS73 344 aa13.13□□□□□ -0.31
VCL-202ENST00000372755 RBM27Q9P2N5 1060 aaKnown RBP13.13□□□□□ -0.31
VCL-202ENST00000372755 ZSWIM4Q9H7M6 989 aa13.12□□□□□ -0.31
VCL-202ENST00000372755 B4DLN1 442 aa13.12□□□□□ -0.31
VCL-202ENST00000372755 MRPL12P52815 198 aaKnown RBP13.12□□□□□ -0.31
VCL-202ENST00000372755 ANKRD13DQ6ZTN6 518 aa13.12□□□□□ -0.31
VCL-202ENST00000372755 HEATR3Q7Z4Q2 680 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms