RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 TSPYL4Q9UJ04 414 aa13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 NOP2P46087 812 aaKnown RBP13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 ILDR1Q86SU0 546 aaPredicted RBP13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 AGLP35573 1532 aa13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 KDRP35968 1356 aa13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 WASLO00401 505 aaPredicted RBP13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 TBC1D8O95759 1140 aa13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 FILIP1Q7Z7B0 1213 aa13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 COG3Q96JB2 828 aa13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 OSBPL5Q9H0X9 879 aaPredicted RBP13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 GIGYF1O75420 1035 aaPredicted RBP13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 SURF6O75683 361 aaKnown RBP13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 SYT10Q6XYQ8 523 aa13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 ZSCAN31Q96LW9 406 aaPredicted RBP13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 ORC3Q9UBD5 711 aaPredicted RBP13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 CYP46A1Q9Y6A2 500 aa13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 SLC27A2O14975 620 aa13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 RBM8AQ9Y5S9 174 aaKnown RBP13.75□□□□□ -0.21
SMARCA1-201ENST00000371121 METP08581 1390 aa13.74□□□□□ -0.21
SMARCA1-201ENST00000371121 RAB11FIP3O75154 756 aa13.74□□□□□ -0.21
SMARCA1-201ENST00000371121 GYS2P54840 703 aa13.74□□□□□ -0.21
SMARCA1-201ENST00000371121 MUM1L1Q5H9M0 696 aa13.74□□□□□ -0.21
SMARCA1-201ENST00000371121 ZFP91Q96JP5 570 aaPredicted RBP13.74□□□□□ -0.21
SMARCA1-201ENST00000371121 SCAND2PQ9GZW5 306 aaPredicted RBP13.74□□□□□ -0.21
SMARCA1-201ENST00000371121 SLC52A1Q9NWF4 448 aa13.74□□□□□ -0.21
SMARCA1-201ENST00000371121 CHGBP05060 677 aa13.73□□□□□ -0.21
SMARCA1-201ENST00000371121 CNTROBQ8N137 903 aa13.73□□□□□ -0.21
SMARCA1-201ENST00000371121 STAG3Q9UJ98 1225 aa13.73□□□□□ -0.21
SMARCA1-201ENST00000371121 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.73□□□□□ -0.212e-6■□□□□ 9.7
SMARCA1-201ENST00000371121 A0A0D9SFI3 127 aa13.73□□□□□ -0.21
SMARCA1-201ENST00000371121 RAPGEF3O95398 923 aa13.73□□□□□ -0.21
SMARCA1-201ENST00000371121 BMS1Q14692 1282 aaKnown RBP13.73□□□□□ -0.21
SMARCA1-201ENST00000371121 ARHGAP29Q52LW3 1261 aa13.73□□□□□ -0.21
SMARCA1-201ENST00000371121 NUDT16Q96DE0 195 aaKnown RBP13.73□□□□□ -0.21
SMARCA1-201ENST00000371121 KDM3BQ7LBC6 1761 aa13.73□□□□□ -0.21
SMARCA1-201ENST00000371121 HAP1P54257 671 aaPredicted RBP13.72□□□□□ -0.21
SMARCA1-201ENST00000371121 MED1Q15648 1581 aaPredicted RBP13.72□□□□□ -0.21
SMARCA1-201ENST00000371121 MED23Q9ULK4 1368 aa13.72□□□□□ -0.21
SMARCA1-201ENST00000371121 NBPF6Q5VWK0 638 aa13.72□□□□□ -0.21
SMARCA1-201ENST00000371121 ZNF589Q86UQ0 364 aaPredicted RBP13.72□□□□□ -0.21
SMARCA1-201ENST00000371121 NBPF4Q96M43 638 aa13.72□□□□□ -0.21
SMARCA1-201ENST00000371121 ALDH8A1Q9H2A2 487 aaPredicted RBP13.72□□□□□ -0.21
SMARCA1-201ENST00000371121 A2ML1A8K2U0 1454 aa13.72□□□□□ -0.21
SMARCA1-201ENST00000371121 SRGAP3O43295 1099 aa13.71□□□□□ -0.21
SMARCA1-201ENST00000371121 TADA3O75528 432 aa13.71□□□□□ -0.21
SMARCA1-201ENST00000371121 STK3Q13188 491 aa13.71□□□□□ -0.21
SMARCA1-201ENST00000371121 CREBRFQ8IUR6 639 aa13.71□□□□□ -0.21
SMARCA1-201ENST00000371121 PARP3Q9Y6F1 533 aa13.71□□□□□ -0.21
SMARCA1-201ENST00000371121 USP31Q70CQ4 1352 aa13.71□□□□□ -0.21
SMARCA1-201ENST00000371121 NEMFO60524 1076 aa13.71□□□□□ -0.21
SMARCA1-201ENST00000371121 UBTFL1P0CB47 393 aaPredicted RBP13.71□□□□□ -0.21
SMARCA1-201ENST00000371121 RPS6KB1P23443 525 aa13.71□□□□□ -0.21
SMARCA1-201ENST00000371121 NCAPHQ15003 741 aa13.71□□□□□ -0.21
SMARCA1-201ENST00000371121 CTDNEP1O95476 244 aa13.71□□□□□ -0.22
SMARCA1-201ENST00000371121 POLR3GO15318 223 aaPredicted RBP13.7□□□□□ -0.22
SMARCA1-201ENST00000371121 CDK11BP21127 795 aaKnown RBP13.7□□□□□ -0.22
SMARCA1-201ENST00000371121 NMIQ13287 307 aaPredicted RBP13.7□□□□□ -0.22
SMARCA1-201ENST00000371121 AOPEPQ8N6M6 819 aa13.7□□□□□ -0.22
SMARCA1-201ENST00000371121 TLR7Q9NYK1 1049 aaKnown RBP13.7□□□□□ -0.22
SMARCA1-201ENST00000371121 H3BQF6 201 aa13.7□□□□□ -0.22
SMARCA1-201ENST00000371121 TTC41PQ6P2S7 1318 aa13.7□□□□□ -0.22
SMARCA1-201ENST00000371121 IL17REQ8NFR9 667 aa13.7□□□□□ -0.22
SMARCA1-201ENST00000371121 BRF1Q92994 677 aa13.7□□□□□ -0.22
SMARCA1-201ENST00000371121 PPP6R1Q9UPN7 881 aa13.7□□□□□ -0.22
SMARCA1-201ENST00000371121 DDX60Q8IY21 1712 aaKnown RBP13.69□□□□□ -0.22
SMARCA1-201ENST00000371121 MLECQ14165 292 aa13.69□□□□□ -0.22
SMARCA1-201ENST00000371121 BEND3Q5T5X7 828 aa13.69□□□□□ -0.22
SMARCA1-201ENST00000371121 KRBA2Q6ZNG9 492 aa13.69□□□□□ -0.22
SMARCA1-201ENST00000371121 TMEM139Q8IV31 216 aa13.69□□□□□ -0.22
SMARCA1-201ENST00000371121 XPO4Q9C0E2 1151 aaKnown RBP13.69□□□□□ -0.22
SMARCA1-201ENST00000371121 DPCR1Q3MIW9 517 aa13.69□□□□□ -0.22
SMARCA1-201ENST00000371121 TMX1Q9H3N1 280 aa13.69□□□□□ -0.22
SMARCA1-201ENST00000371121 CEBPZQ03701 1054 aaKnown RBP13.68□□□□□ -0.22
SMARCA1-201ENST00000371121 STX1AQ16623 288 aa13.68□□□□□ -0.22
SMARCA1-201ENST00000371121 BICD2Q8TD16 824 aa13.68□□□□□ -0.22
SMARCA1-201ENST00000371121 RCOR1Q9UKL0 485 aa13.68□□□□□ -0.22
SMARCA1-201ENST00000371121 PA2G4Q9UQ80 394 aaKnown RBP13.68□□□□□ -0.22
SMARCA1-201ENST00000371121 PIK3C2AO00443 1686 aa13.68□□□□□ -0.22
SMARCA1-201ENST00000371121 PSDA5PKW4 1024 aaPredicted RBP13.68□□□□□ -0.22
SMARCA1-201ENST00000371121 PTPN21Q16825 1174 aa13.68□□□□□ -0.22
SMARCA1-201ENST00000371121 CC2D1AQ6P1N0 951 aaPredicted RBP13.68□□□□□ -0.22
SMARCA1-201ENST00000371121 FOXR1Q6PIV2 292 aa13.68□□□□□ -0.22
SMARCA1-201ENST00000371121 RGPD8O14715 1765 aaPredicted RBP13.67□□□□□ -0.22
SMARCA1-201ENST00000371121 MYO1CO00159 1063 aa13.67□□□□□ -0.22
SMARCA1-201ENST00000371121 KAZALD1Q96I82 304 aa13.67□□□□□ -0.22
SMARCA1-201ENST00000371121 USP28Q96RU2 1077 aa13.67□□□□□ -0.22
SMARCA1-201ENST00000371121 SEC62Q99442 399 aaKnown RBP13.67□□□□□ -0.22
SMARCA1-201ENST00000371121 FUT8Q9BYC5 575 aa13.67□□□□□ -0.22
SMARCA1-201ENST00000371121 RSPH14Q9UHP6 348 aa13.67□□□□□ -0.22
SMARCA1-201ENST00000371121 GOLGA8FQ08AF8 430 aa13.67□□□□□ -0.22
SMARCA1-201ENST00000371121 GOLGA8DPQ0D2H9 430 aa13.67□□□□□ -0.22
SMARCA1-201ENST00000371121 SCRN1Q12765 414 aa13.67□□□□□ -0.22
SMARCA1-201ENST00000371121 CCAR1Q8IX12 1150 aaKnown RBP13.67□□□□□ -0.22
SMARCA1-201ENST00000371121 FMR1NBQ8N0W7 255 aaPredicted RBP13.67□□□□□ -0.22
SMARCA1-201ENST00000371121 CHMP4CQ96CF2 233 aa13.67□□□□□ -0.22
SMARCA1-201ENST00000371121 GLRX3O76003 335 aaKnown RBP13.67□□□□□ -0.22
SMARCA1-201ENST00000371121 CAVIN2O95810 425 aa13.67□□□□□ -0.22
SMARCA1-201ENST00000371121 OAS2P29728 719 aaKnown RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms