RNA–Protein interactions for RNA: ENST00000357475.8

SSBP3-202, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene SSBP3, Length 1,533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-202ENST00000357475 FAM161AQ3B820 660 aa31.75■■■□□ 2.67
SSBP3-202ENST00000357475 NLRP3Q96P20 1036 aa31.75■■■□□ 2.67
SSBP3-202ENST00000357475 CHMP3Q9Y3E7 222 aa31.75■■■□□ 2.67
SSBP3-202ENST00000357475 HDAC5Q9UQL6 1122 aa31.75■■■□□ 2.67
SSBP3-202ENST00000357475 SRCAPQ6ZRS2 3230 aa31.74■■■□□ 2.67
SSBP3-202ENST00000357475 KIAA1551Q9HCM1 1747 aa31.74■■■□□ 2.67
SSBP3-202ENST00000357475 ATP8B2P98198 1209 aa31.73■■■□□ 2.67
SSBP3-202ENST00000357475 SF3B3Q15393 1217 aaKnown RBP31.73■■■□□ 2.67
SSBP3-202ENST00000357475 SPEF2Q9C093 1822 aa31.72■■■□□ 2.67
SSBP3-202ENST00000357475 MTX1Q13505 466 aa31.72■■■□□ 2.67
SSBP3-202ENST00000357475 SEC31BQ9NQW1 1179 aa31.72■■■□□ 2.67
SSBP3-202ENST00000357475 KLRG2A4D1S0 409 aaPredicted RBP31.71■■■□□ 2.67
SSBP3-202ENST00000357475 SRGAP3O43295 1099 aa31.71■■■□□ 2.67
SSBP3-202ENST00000357475 HSP90B1P14625 803 aaKnown RBP31.71■■■□□ 2.67
SSBP3-202ENST00000357475 AAMPQ13685 434 aa31.71■■■□□ 2.67
SSBP3-202ENST00000357475 CRY2Q49AN0 593 aa31.7■■■□□ 2.67
SSBP3-202ENST00000357475 KLHDC4Q8TBB5 520 aa31.7■■■□□ 2.67
SSBP3-202ENST00000357475 CCDC152Q4G0S7 254 aa31.7■■■□□ 2.66
SSBP3-202ENST00000357475 RPAP2Q8IXW5 612 aaPredicted RBP31.7■■■□□ 2.66
SSBP3-202ENST00000357475 CHRNA5P30532 468 aa31.69■■■□□ 2.66
SSBP3-202ENST00000357475 RFX5P48382 616 aaPredicted RBP31.69■■■□□ 2.66
SSBP3-202ENST00000357475 CACNA1SQ13698 1873 aa31.68■■■□□ 2.66
SSBP3-202ENST00000357475 ITGA6P23229 1130 aa31.68■■■□□ 2.66
SSBP3-202ENST00000357475 PDE6BP35913 854 aa31.68■■■□□ 2.66
SSBP3-202ENST00000357475 POLA2Q14181 598 aa31.68■■■□□ 2.66
SSBP3-202ENST00000357475 KLHL34Q8N239 644 aa31.68■■■□□ 2.66
SSBP3-202ENST00000357475 ZNF594Q96JF6 807 aaPredicted RBP31.68■■■□□ 2.66
SSBP3-202ENST00000357475 DLEC1Q9Y238 1755 aa31.67■■■□□ 2.66
SSBP3-202ENST00000357475 SSH3Q8TE77 659 aa31.67■■■□□ 2.66
SSBP3-202ENST00000357475 PPP1R1BQ9UD71 204 aaPredicted RBP31.67■■■□□ 2.66
SSBP3-202ENST00000357475 PA2G4Q9UQ80 394 aaKnown RBP31.67■■■□□ 2.66
SSBP3-202ENST00000357475 SRGNP10124 158 aa31.66■■■□□ 2.66
SSBP3-202ENST00000357475 C2CD5Q86YS7 1000 aa31.66■■■□□ 2.66
SSBP3-202ENST00000357475 RTL9Q8NET4 1388 aa31.66■■■□□ 2.66
SSBP3-202ENST00000357475 IGHDP01880 384 aa31.65■■■□□ 2.66
SSBP3-202ENST00000357475 IFIT5Q13325 482 aaKnown RBP31.65■■■□□ 2.66
SSBP3-202ENST00000357475 GTF3C3Q9Y5Q9 886 aa31.65■■■□□ 2.66
SSBP3-202ENST00000357475 PTPN12Q05209 780 aaKnown RBP31.64■■■□□ 2.66
SSBP3-202ENST00000357475 CCDC57Q2TAC2 916 aa31.64■■■□□ 2.66
SSBP3-202ENST00000357475 SLC51AQ86UW1 340 aa31.64■■■□□ 2.66
SSBP3-202ENST00000357475 RPGRQ92834 1020 aaKnown RBP31.64■■■□□ 2.66
SSBP3-202ENST00000357475 CELF1Q92879 486 aaKnown RBP31.64■■■□□ 2.66
SSBP3-202ENST00000357475 GOLGB1Q14789 3259 aaKnown RBP31.62■■■□□ 2.65
SSBP3-202ENST00000357475 A0A0G2JLW4 131 aa31.62■■■□□ 2.65
SSBP3-202ENST00000357475 ANKRD18BA2A2Z9 1011 aa31.62■■■□□ 2.65
SSBP3-202ENST00000357475 ERICH6BQ5W0A0 696 aa31.62■■■□□ 2.65
SSBP3-202ENST00000357475 LRP5O75197 1615 aa31.62■■■□□ 2.65
SSBP3-202ENST00000357475 DPEP1P16444 411 aa31.61■■■□□ 2.65
SSBP3-202ENST00000357475 HOXA10P31260 410 aaPredicted RBP31.61■■■□□ 2.65
SSBP3-202ENST00000357475 H0YIN7 160 aa31.6■■■□□ 2.65
SSBP3-202ENST00000357475 KCNA3P22001 575 aa31.6■■■□□ 2.65
SSBP3-202ENST00000357475 DDX46Q7L014 1031 aaKnown RBP31.6■■■□□ 2.65
SSBP3-202ENST00000357475 SIL1Q9H173 461 aa31.6■■■□□ 2.65
SSBP3-202ENST00000357475 HDAC1Q13547 482 aaPredicted RBP31.59■■■□□ 2.65
SSBP3-202ENST00000357475 B4GALNT3Q6L9W6 998 aa31.59■■■□□ 2.65
SSBP3-202ENST00000357475 PUS3Q9BZE2 481 aaKnown RBP31.59■■■□□ 2.65
SSBP3-202ENST00000357475 CD2APQ9Y5K6 639 aa31.59■■■□□ 2.65
SSBP3-202ENST00000357475 BRCA1P38398 1863 aaKnown RBP31.59■■■□□ 2.65
SSBP3-202ENST00000357475 NPR1P16066 1061 aa31.59■■■□□ 2.65
SSBP3-202ENST00000357475 NLGN2Q8NFZ4 835 aa31.59■■■□□ 2.65
SSBP3-202ENST00000357475 ZNF622Q969S3 477 aaKnown RBP eCLIP31.59■■■□□ 2.65
SSBP3-202ENST00000357475 MASTLQ96GX5 879 aa31.59■■■□□ 2.65
SSBP3-202ENST00000357475 RBM17Q96I25 401 aaKnown RBP31.59■■■□□ 2.65
SSBP3-202ENST00000357475 HMMRO75330 724 aa31.58■■■□□ 2.65
SSBP3-202ENST00000357475 FHDC1Q9C0D6 1143 aaPredicted RBP31.58■■■□□ 2.65
SSBP3-202ENST00000357475 COPRSQ9NQ92 184 aa31.58■■■□□ 2.65
SSBP3-202ENST00000357475 SLX4Q8IY92 1834 aa31.58■■■□□ 2.65
SSBP3-202ENST00000357475 GRAPQ13588 217 aa31.57■■■□□ 2.64
SSBP3-202ENST00000357475 LRRC24Q50LG9 513 aa31.57■■■□□ 2.64
SSBP3-202ENST00000357475 GRAPLQ8TC17 118 aaPredicted RBP31.57■■■□□ 2.64
SSBP3-202ENST00000357475 PPP4R2Q9NY27 417 aa31.57■■■□□ 2.64
SSBP3-202ENST00000357475 EXOC6BQ9Y2D4 811 aa31.57■■■□□ 2.64
SSBP3-202ENST00000357475 TAF7LQ5H9L4 462 aa31.56■■■□□ 2.64
SSBP3-202ENST00000357475 CRAMP1Q96RY5 1269 aa31.56■■■□□ 2.64
SSBP3-202ENST00000357475 TGFB2P61812 414 aa31.55■■■□□ 2.64
SSBP3-202ENST00000357475 STYK1Q6J9G0 422 aa31.55■■■□□ 2.64
SSBP3-202ENST00000357475 ANKRD18AQ8IVF6 992 aa31.55■■■□□ 2.64
SSBP3-202ENST00000357475 CDC5LQ99459 802 aaKnown RBP31.55■■■□□ 2.64
SSBP3-202ENST00000357475 WWC3Q9ULE0 1092 aa31.55■■■□□ 2.64
SSBP3-202ENST00000357475 A0A1B0GUL6 1792 aa31.55■■■□□ 2.64
SSBP3-202ENST00000357475 SURF6O75683 361 aaKnown RBP31.54■■■□□ 2.64
SSBP3-202ENST00000357475 RPS8P62241 208 aaKnown RBP31.54■■■□□ 2.64
SSBP3-202ENST00000357475 RWDD1Q9H446 243 aaPredicted RBP31.54■■■□□ 2.64
SSBP3-202ENST00000357475 CCDC136Q96JN2 1154 aa31.54■■■□□ 2.64
SSBP3-202ENST00000357475 ATG9AQ7Z3C6 839 aa31.53■■■□□ 2.64
SSBP3-202ENST00000357475 DCTPP1Q9H773 170 aa31.53■■■□□ 2.64
SSBP3-202ENST00000357475 PDZRN3Q9UPQ7 1066 aa31.53■■■□□ 2.64
SSBP3-202ENST00000357475 NOP58Q9Y2X3 529 aaKnown RBP31.53■■■□□ 2.64
SSBP3-202ENST00000357475 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP31.53■■■□□ 2.64
SSBP3-202ENST00000357475 LDHAL6AQ6ZMR3 332 aa31.52■■■□□ 2.64
SSBP3-202ENST00000357475 IGHMBP2P38935 993 aaKnown RBP31.51■■■□□ 2.63
SSBP3-202ENST00000357475 EYA2O00167 538 aa31.5■■■□□ 2.63
SSBP3-202ENST00000357475 APBB1O00213 710 aa31.5■■■□□ 2.63
SSBP3-202ENST00000357475 MPHOSPH8Q99549 860 aa31.5■■■□□ 2.63
SSBP3-202ENST00000357475 RIPOR2Q9Y4F9 1068 aa31.5■■■□□ 2.63
SSBP3-202ENST00000357475 LRRC37AA6NMS7 1700 aa31.5■■■□□ 2.63
SSBP3-202ENST00000357475 PRPF40BQ6NWY9 871 aaKnown RBP31.49■■■□□ 2.63
SSBP3-202ENST00000357475 OLFM4Q6UX06 510 aa31.49■■■□□ 2.63
SSBP3-202ENST00000357475 CNNM1Q9NRU3 951 aa31.49■■■□□ 2.63
SSBP3-202ENST00000357475 KDM2BQ8NHM5 1336 aa31.49■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms