RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 SH3GL3Q99963 347 aa7.01□□□□□ -1.29
VCAN-203ENST00000343200 PABPN1LA6NDY0 278 aaKnown RBP7.01□□□□□ -1.29
VCAN-203ENST00000343200 GIGYF1O75420 1035 aaPredicted RBP7.01□□□□□ -1.29
VCAN-203ENST00000343200 VPS41P49754 854 aa7.01□□□□□ -1.29
VCAN-203ENST00000343200 CETN1Q12798 172 aa7.01□□□□□ -1.29
VCAN-203ENST00000343200 PDE3AQ14432 1141 aa7.01□□□□□ -1.29
VCAN-203ENST00000343200 KIAA1524Q8TCG1 905 aa7.01□□□□□ -1.29
VCAN-203ENST00000343200 ARHGEF2Q92974 986 aaKnown RBP7.01□□□□□ -1.29
VCAN-203ENST00000343200 PYM1Q9BRP8 204 aaKnown RBP7.01□□□□□ -1.29
VCAN-203ENST00000343200 DRC3Q9H069 523 aa7.01□□□□□ -1.29
VCAN-203ENST00000343200 KDM5AP29375 1690 aaKnown RBP7□□□□□ -1.29
VCAN-203ENST00000343200 CCDC152Q4G0S7 254 aa7□□□□□ -1.29
VCAN-203ENST00000343200 CCDC68Q9H2F9 335 aa7□□□□□ -1.29
VCAN-203ENST00000343200 NKIRAS1Q9NYS0 192 aa7□□□□□ -1.29
VCAN-203ENST00000343200 ARHGEF17Q96PE2 2063 aaPredicted RBP7□□□□□ -1.29
VCAN-203ENST00000343200 HIP1RO75146 1068 aa7□□□□□ -1.29
VCAN-203ENST00000343200 MYRIPQ8NFW9 859 aa7□□□□□ -1.29
VCAN-203ENST00000343200 PRPF4BQ13523 1007 aaKnown RBP7□□□□□ -1.29
VCAN-203ENST00000343200 GTF2E1P29083 439 aaPredicted RBP7□□□□□ -1.29
VCAN-203ENST00000343200 LRSAM1Q6UWE0 723 aa7□□□□□ -1.29
VCAN-203ENST00000343200 SHROOM3Q8TF72 1996 aa7□□□□□ -1.29
VCAN-203ENST00000343200 TNPO1Q92973 898 aaKnown RBP7□□□□□ -1.29
VCAN-203ENST00000343200 PAIP2BQ9ULR5 123 aaKnown RBP7□□□□□ -1.29
VCAN-203ENST00000343200 TBC1D2BQ9UPU7 963 aa7□□□□□ -1.29
VCAN-203ENST00000343200 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7□□□□□ -1.29
VCAN-203ENST00000343200 WASHC2AQ641Q2 1341 aa7□□□□□ -1.29
VCAN-203ENST00000343200 SELENOSQ9BQE4 189 aa7□□□□□ -1.29
VCAN-203ENST00000343200 CREB3O43889 395 aa7□□□□□ -1.29
VCAN-203ENST00000343200 MATR3P43243 847 aaKnown RBP eCLIP7□□□□□ -1.29
VCAN-203ENST00000343200 TUBB2AQ13885 445 aa7□□□□□ -1.29
VCAN-203ENST00000343200 EFCAB13Q8IY85 973 aa7□□□□□ -1.29
VCAN-203ENST00000343200 TUBB2BQ9BVA1 445 aa7□□□□□ -1.29
VCAN-203ENST00000343200 ARID1AO14497 2285 aa7□□□□□ -1.29
VCAN-203ENST00000343200 CCDC69A6NI79 296 aa7□□□□□ -1.29
VCAN-203ENST00000343200 PLCB1Q9NQ66 1216 aa7□□□□□ -1.29
VCAN-203ENST00000343200 SSX2IPQ9Y2D8 614 aa7□□□□□ -1.29
VCAN-203ENST00000343200 WIZO95785 1651 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 PHLDB3Q6NSJ2 640 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 STAG1Q8WVM7 1258 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 N4BP2L2Q92802 583 aaPredicted RBP6.99□□□□□ -1.29
VCAN-203ENST00000343200 RUNDC1Q96C34 613 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 WASHC2CQ9Y4E1 1318 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 DNA2P51530 1060 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 YY1AP1Q9H869 796 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 KRT86O43790 486 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 UBTFL1P0CB47 393 aaPredicted RBP6.99□□□□□ -1.29
VCAN-203ENST00000343200 ARMC9Q7Z3E5 817 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 VIMP08670 466 aaKnown RBP6.99□□□□□ -1.29
VCAN-203ENST00000343200 ZNF165P49910 485 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 PPP1R21Q6ZMI0 780 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 GIMAP4Q9NUV9 329 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 RAP1GDS1P52306 607 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 JAKMIP1Q96N16 626 aaKnown RBP6.99□□□□□ -1.29
VCAN-203ENST00000343200 C1orf141Q5JVX7 400 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 GOLGA6BA6NDN3 693 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 HPDP32754 393 aaPredicted RBP6.99□□□□□ -1.29
VCAN-203ENST00000343200 FAM160A1Q05DH4 1040 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 DTNBP1Q96EV8 351 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 PPP1R9AQ9ULJ8 1098 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 ZNF131P52739 623 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 FKBP5Q13451 457 aaPredicted RBP6.99□□□□□ -1.29
VCAN-203ENST00000343200 KANK3Q6NY19 840 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 SCINQ9Y6U3 715 aa6.99□□□□□ -1.29
VCAN-203ENST00000343200 POTEB3A0JP26 581 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 SYF2O95926 243 aaKnown RBP6.98□□□□□ -1.29
VCAN-203ENST00000343200 POTEBQ6S5H4 581 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 ENAHQ8N8S7 591 aaPredicted RBP6.98□□□□□ -1.29
VCAN-203ENST00000343200 IWS1Q96ST2 819 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 MTRF1LQ9UGC7 380 aaKnown RBP6.98□□□□□ -1.29
VCAN-203ENST00000343200 DAAM1Q9Y4D1 1078 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 RIPOR2Q9Y4F9 1068 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 MSH5O43196 834 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 HDAC1Q13547 482 aaPredicted RBP6.98□□□□□ -1.29
VCAN-203ENST00000343200 DUSP27Q5VZP5 1158 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 SYTL4Q96C24 671 aaPredicted RBP6.98□□□□□ -1.29
VCAN-203ENST00000343200 NRBF2Q96F24 287 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 ZSWIM4Q9H7M6 989 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 ELP1O95163 1332 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 I3L4J1 428 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 PHACTR2O75167 634 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 LMNB2Q03252 620 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 NUP155O75694 1391 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 CHMP4BP1P59074 171 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 WASHC4Q2M389 1173 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 LCA5Q86VQ0 697 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 ERO1AQ96HE7 468 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 TDRD12Q587J7 1177 aaKnown RBP6.98□□□□□ -1.29
VCAN-203ENST00000343200 RPAP2Q8IXW5 612 aaPredicted RBP6.98□□□□□ -1.29
VCAN-203ENST00000343200 RABEP2Q9H5N1 569 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 SYT1P21579 422 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 SAFB2Q14151 953 aaKnown RBP eCLIP6.98□□□□□ -1.29
VCAN-203ENST00000343200 TBC1D5Q92609 795 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 MED4Q9NPJ6 270 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 PDRG1Q9NUG6 133 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 CTTNBP2Q8WZ74 1663 aa6.98□□□□□ -1.29
VCAN-203ENST00000343200 INPP1P49441 399 aa6.97□□□□□ -1.29
VCAN-203ENST00000343200 SKOR1P84550 965 aa6.97□□□□□ -1.29
VCAN-203ENST00000343200 SEPT2Q15019 361 aa6.97□□□□□ -1.29
VCAN-203ENST00000343200 TTC5Q8N0Z6 440 aa6.97□□□□□ -1.29
VCAN-203ENST00000343200 GPR161Q8N6U8 529 aaKnown RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms