RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 RPGRQ92834 1020 aaKnown RBP19.73■□□□□ 0.75
VAPA-201ENST00000340541 FAM89AQ96GI7 184 aa19.73■□□□□ 0.75
VAPA-201ENST00000340541 NLRP3Q96P20 1036 aa19.73■□□□□ 0.75
VAPA-201ENST00000340541 CRAMP1Q96RY5 1269 aa19.73■□□□□ 0.75
VAPA-201ENST00000340541 SNED1Q8TER0 1413 aa19.72■□□□□ 0.75
VAPA-201ENST00000340541 JDP2Q8WYK2 163 aa19.72■□□□□ 0.75
VAPA-201ENST00000340541 IGKV5-2P06315 115 aa19.71■□□□□ 0.75
VAPA-201ENST00000340541 OLFM4Q6UX06 510 aa19.71■□□□□ 0.75
VAPA-201ENST00000340541 PNMA8AQ86V59 439 aaPredicted RBP19.71■□□□□ 0.75
VAPA-201ENST00000340541 GPC2Q8N158 579 aa19.71■□□□□ 0.75
VAPA-201ENST00000340541 CCDC191Q8NCU4 936 aa19.71■□□□□ 0.75
VAPA-201ENST00000340541 RBM17Q96I25 401 aaKnown RBP19.71■□□□□ 0.75
VAPA-201ENST00000340541 HACL1Q9UJ83 578 aa19.71■□□□□ 0.75
VAPA-201ENST00000340541 POTEIP0CG38 1075 aa19.7■□□□□ 0.74
VAPA-201ENST00000340541 POTEJP0CG39 1038 aa19.7■□□□□ 0.74
VAPA-201ENST00000340541 PCNTO95613 3336 aa19.69■□□□□ 0.74
VAPA-201ENST00000340541 RTL5Q5HYW3 569 aaPredicted RBP19.69■□□□□ 0.74
VAPA-201ENST00000340541 COL13A1Q5TAT6 717 aaPredicted RBP19.69■□□□□ 0.74
VAPA-201ENST00000340541 SLC51AQ86UW1 340 aa19.69■□□□□ 0.74
VAPA-201ENST00000340541 ZBTB38Q8NAP3 1195 aaPredicted RBP19.69■□□□□ 0.74
VAPA-201ENST00000340541 VPS33BQ9H267 617 aa19.69■□□□□ 0.74
VAPA-201ENST00000340541 CWC25Q9NXE8 425 aaPredicted RBP19.69■□□□□ 0.74
VAPA-201ENST00000340541 PASKQ96RG2 1323 aa19.69■□□□□ 0.74
VAPA-201ENST00000340541 ZNF541Q9H0D2 1346 aa19.69■□□□□ 0.74
VAPA-201ENST00000340541 PCCAP05165 728 aaPredicted RBP19.68■□□□□ 0.74
VAPA-201ENST00000340541 FKBP5Q13451 457 aaPredicted RBP19.68■□□□□ 0.74
VAPA-201ENST00000340541 TAF1P21675 1872 aa19.68■□□□□ 0.74
VAPA-201ENST00000340541 ABCC4O15439 1325 aa19.68■□□□□ 0.74
VAPA-201ENST00000340541 IRS4O14654 1257 aaPredicted RBP19.67■□□□□ 0.74
VAPA-201ENST00000340541 ITGBL1O95965 494 aaPredicted RBP19.67■□□□□ 0.74
VAPA-201ENST00000340541 EPHX2P34913 555 aa19.67■□□□□ 0.74
VAPA-201ENST00000340541 SF3B3Q15393 1217 aaKnown RBP19.67■□□□□ 0.74
VAPA-201ENST00000340541 CWF19L2Q2TBE0 894 aaKnown RBP19.67■□□□□ 0.74
VAPA-201ENST00000340541 TMX4Q9H1E5 349 aaPredicted RBP19.67■□□□□ 0.74
VAPA-201ENST00000340541 COL4A1P02462 1669 aa19.66■□□□□ 0.74
VAPA-201ENST00000340541 NEURL1BA8MQ27 555 aa19.66■□□□□ 0.74
VAPA-201ENST00000340541 HSPA1AP0DMV8 641 aaKnown RBP19.66■□□□□ 0.74
VAPA-201ENST00000340541 HSPA1BP0DMV9 641 aaKnown RBP19.66■□□□□ 0.74
VAPA-201ENST00000340541 EIF6P56537 245 aaKnown RBP19.66■□□□□ 0.74
VAPA-201ENST00000340541 PIAS4Q8N2W9 510 aaPredicted RBP19.66■□□□□ 0.74
VAPA-201ENST00000340541 DNAAF4Q8WXU2 420 aa19.66■□□□□ 0.74
VAPA-201ENST00000340541 JARID2Q92833 1246 aaPredicted RBP19.66■□□□□ 0.74
VAPA-201ENST00000340541 PPEF1O14829 653 aaPredicted RBP19.65■□□□□ 0.74
VAPA-201ENST00000340541 NEXNQ0ZGT2 675 aa19.65■□□□□ 0.74
VAPA-201ENST00000340541 TMEM88BA6NKF7 163 aa19.64■□□□□ 0.73
VAPA-201ENST00000340541 F6X3S4 739 aa19.64■□□□□ 0.73
VAPA-201ENST00000340541 EAPPQ56P03 285 aaPredicted RBP19.64■□□□□ 0.73
VAPA-201ENST00000340541 MRPL50Q8N5N7 158 aaKnown RBP19.64■□□□□ 0.73
VAPA-201ENST00000340541 CLEC11AQ9Y240 323 aa19.64■□□□□ 0.73
VAPA-201ENST00000340541 CDHR2Q9BYE9 1310 aa19.64■□□□□ 0.73
VAPA-201ENST00000340541 CNTNAP1P78357 1384 aa19.63■□□□□ 0.73
VAPA-201ENST00000340541 BBOX1O75936 387 aa19.63■□□□□ 0.73
VAPA-201ENST00000340541 LARGE2Q8N3Y3 721 aa19.63■□□□□ 0.73
VAPA-201ENST00000340541 LINS1Q8NG48 757 aa19.63■□□□□ 0.73
VAPA-201ENST00000340541 SSH1Q8WYL5 1049 aa19.63■□□□□ 0.73
VAPA-201ENST00000340541 ATP6V0A2Q9Y487 856 aa19.63■□□□□ 0.73
VAPA-201ENST00000340541 H7C1W4 665 aa19.62■□□□□ 0.73
VAPA-201ENST00000340541 GRAPQ13588 217 aa19.62■□□□□ 0.73
VAPA-201ENST00000340541 GCKRQ14397 625 aa19.62■□□□□ 0.73
VAPA-201ENST00000340541 DDX46Q7L014 1031 aaKnown RBP19.62■□□□□ 0.73
VAPA-201ENST00000340541 CNTROBQ8N137 903 aa19.62■□□□□ 0.73
VAPA-201ENST00000340541 SUPT20HQ8NEM7 779 aa19.62■□□□□ 0.73
VAPA-201ENST00000340541 GRAPLQ8TC17 118 aaPredicted RBP19.62■□□□□ 0.73
VAPA-201ENST00000340541 MKRN1Q9UHC7 482 aaKnown RBP19.62■□□□□ 0.73
VAPA-201ENST00000340541 ADAMTSL1Q8N6G6 1762 aa19.62■□□□□ 0.73
VAPA-201ENST00000340541 LRRC37AA6NMS7 1700 aa19.62■□□□□ 0.73
VAPA-201ENST00000340541 LMOD1P29536 600 aaPredicted RBP19.61■□□□□ 0.73
VAPA-201ENST00000340541 CASP7P55210 303 aa19.61■□□□□ 0.73
VAPA-201ENST00000340541 HNRNPUQ00839 825 aaKnown RBP eCLIP19.61■□□□□ 0.73
VAPA-201ENST00000340541 BEND3Q5T5X7 828 aa19.61■□□□□ 0.73
VAPA-201ENST00000340541 TNS4Q8IZW8 715 aa19.61■□□□□ 0.73
VAPA-201ENST00000340541 RTFDC1Q9BY42 306 aaPredicted RBP19.61■□□□□ 0.73
VAPA-201ENST00000340541 MYH3P11055 1940 aa19.61■□□□□ 0.73
VAPA-201ENST00000340541 PDE8AO60658 829 aa19.6■□□□□ 0.73
VAPA-201ENST00000340541 SP8Q8IXZ3 490 aa19.6■□□□□ 0.73
VAPA-201ENST00000340541 CELF1Q92879 486 aaKnown RBP19.6■□□□□ 0.73
VAPA-201ENST00000340541 CT47B1P0C2W7 299 aaPredicted RBP19.59■□□□□ 0.73
VAPA-201ENST00000340541 HSP90B1P14625 803 aaKnown RBP19.59■□□□□ 0.73
VAPA-201ENST00000340541 ALDH1L2Q3SY69 923 aa19.59■□□□□ 0.73
VAPA-201ENST00000340541 UBE3BQ7Z3V4 1068 aa19.59■□□□□ 0.73
VAPA-201ENST00000340541 NIM1KQ8IY84 436 aa19.59■□□□□ 0.73
VAPA-201ENST00000340541 GJA3Q9Y6H8 435 aa19.59■□□□□ 0.73
VAPA-201ENST00000340541 USP50Q70EL3 339 aaPredicted RBP19.58■□□□□ 0.72
VAPA-201ENST00000340541 TMC4Q7Z404 712 aa19.58■□□□□ 0.72
VAPA-201ENST00000340541 BCL2L13Q9BXK5 485 aa19.58■□□□□ 0.72
VAPA-201ENST00000340541 COL4A5P29400 1685 aa19.58■□□□□ 0.72
VAPA-201ENST00000340541 PPIP5K2O43314 1243 aa19.57■□□□□ 0.72
VAPA-201ENST00000340541 MAP1SQ66K74 1059 aaPredicted RBP19.57■□□□□ 0.72
VAPA-201ENST00000340541 SEC31BQ9NQW1 1179 aa19.57■□□□□ 0.72
VAPA-201ENST00000340541 DUOX1Q9NRD9 1551 aa19.57■□□□□ 0.72
VAPA-201ENST00000340541 PTPRCP08575 1304 aa19.56■□□□□ 0.72
VAPA-201ENST00000340541 RASSF10A6NK89 507 aa19.56■□□□□ 0.72
VAPA-201ENST00000340541 SCNN1DP51172 638 aa19.56■□□□□ 0.72
VAPA-201ENST00000340541 CTSWP56202 376 aa19.56■□□□□ 0.72
VAPA-201ENST00000340541 CCDC152Q4G0S7 254 aa19.56■□□□□ 0.72
VAPA-201ENST00000340541 TTLL11Q8NHH1 800 aa19.56■□□□□ 0.72
VAPA-201ENST00000340541 PLA2G12BQ9BX93 195 aa19.56■□□□□ 0.72
VAPA-201ENST00000340541 ZNRF3Q9ULT6 936 aa19.56■□□□□ 0.72
VAPA-201ENST00000340541 LTBP1Q14766 1721 aa19.56■□□□□ 0.72
VAPA-201ENST00000340541 EPS15P42566 896 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 123.2 ms