RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 CRAMP1Q96RY5 1269 aa16.1■□□□□ 0.17
SS18-202ENST00000269138 PLA2G12BQ9BX93 195 aa16.1■□□□□ 0.17
SS18-202ENST00000269138 FOXO4P98177 505 aa16.09■□□□□ 0.17
SS18-202ENST00000269138 TTLL11Q8NHH1 800 aa16.09■□□□□ 0.17
SS18-202ENST00000269138 KAZALD1Q96I82 304 aa16.09■□□□□ 0.17
SS18-202ENST00000269138 SEC31BQ9NQW1 1179 aa16.09■□□□□ 0.17
SS18-202ENST00000269138 BRCA1P38398 1863 aaKnown RBP16.09■□□□□ 0.17
SS18-202ENST00000269138 LAMB2P55268 1798 aa16.09■□□□□ 0.17
SS18-202ENST00000269138 DLEC1Q9Y238 1755 aa16.09■□□□□ 0.17
SS18-202ENST00000269138 C21orf2O43822 256 aa16.09■□□□□ 0.17
SS18-202ENST00000269138 ALDH1B1P30837 517 aa16.09■□□□□ 0.17
SS18-202ENST00000269138 OLFM4Q6UX06 510 aa16.09■□□□□ 0.17
SS18-202ENST00000269138 DDX46Q7L014 1031 aaKnown RBP16.09■□□□□ 0.17
SS18-202ENST00000269138 FTSJ3Q8IY81 847 aaKnown RBP16.09■□□□□ 0.17
SS18-202ENST00000269138 MEIS3Q99687 375 aa16.09■□□□□ 0.17
SS18-202ENST00000269138 CCDC152Q4G0S7 254 aa16.08■□□□□ 0.16
SS18-202ENST00000269138 C7orf43Q8WVR3 580 aa16.08■□□□□ 0.16
SS18-202ENST00000269138 CELF1Q92879 486 aaKnown RBP16.08■□□□□ 0.16
SS18-202ENST00000269138 GREM2Q9H772 168 aa16.08■□□□□ 0.16
SS18-202ENST00000269138 COL4A1P02462 1669 aa16.07■□□□□ 0.16
SS18-202ENST00000269138 DCAF8L1A6NGE4 600 aa16.07■□□□□ 0.16
SS18-202ENST00000269138 CSF1RP07333 972 aa16.07■□□□□ 0.16
SS18-202ENST00000269138 GRAPQ13588 217 aa16.07■□□□□ 0.16
SS18-202ENST00000269138 C20orf194Q5TEA3 1177 aa16.07■□□□□ 0.16
SS18-202ENST00000269138 GRAPLQ8TC17 118 aaPredicted RBP16.07■□□□□ 0.16
SS18-202ENST00000269138 SLX4Q8IY92 1834 aa16.07■□□□□ 0.16
SS18-202ENST00000269138 FAM161AQ3B820 660 aa16.06■□□□□ 0.16
SS18-202ENST00000269138 LMBR1LQ6UX01 489 aa16.06■□□□□ 0.16
SS18-202ENST00000269138 ARHGAP27Q6ZUM4 889 aa16.06■□□□□ 0.16
SS18-202ENST00000269138 PPEF1O14829 653 aaPredicted RBP16.05■□□□□ 0.16
SS18-202ENST00000269138 GRIN3BO60391 1043 aa16.05■□□□□ 0.16
SS18-202ENST00000269138 UBTFL1P0CB47 393 aaPredicted RBP16.05■□□□□ 0.16
SS18-202ENST00000269138 ITPRIPQ8IWB1 547 aa16.05■□□□□ 0.16
SS18-202ENST00000269138 ANKRD44Q8N8A2 993 aa16.05■□□□□ 0.16
SS18-202ENST00000269138 BICC1Q9H694 974 aaKnown RBP16.05■□□□□ 0.16
SS18-202ENST00000269138 BBOX1O75936 387 aa16.04■□□□□ 0.16
SS18-202ENST00000269138 CHMP3Q9Y3E7 222 aa16.04■□□□□ 0.16
SS18-202ENST00000269138 GOLGB1Q14789 3259 aaKnown RBP16.04■□□□□ 0.16
SS18-202ENST00000269138 TAF1P21675 1872 aa16.04■□□□□ 0.16
SS18-202ENST00000269138 ITGA6P23229 1130 aa16.04■□□□□ 0.16
SS18-202ENST00000269138 RPS8P62241 208 aaKnown RBP16.04■□□□□ 0.16
SS18-202ENST00000269138 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.04■□□□□ 0.16
SS18-202ENST00000269138 LRRFIP2Q9Y608 721 aaKnown RBP16.04■□□□□ 0.16
SS18-202ENST00000269138 RTL9Q8NET4 1388 aa16.03■□□□□ 0.16
SS18-202ENST00000269138 MS4A1P11836 297 aa16.03■□□□□ 0.16
SS18-202ENST00000269138 RRP1P56182 461 aaKnown RBP16.03■□□□□ 0.16
SS18-202ENST00000269138 RABL6Q3YEC7 729 aaPredicted RBP16.03■□□□□ 0.16
SS18-202ENST00000269138 COG6Q9Y2V7 657 aa16.03■□□□□ 0.16
SS18-202ENST00000269138 ATP6V0A2Q9Y487 856 aa16.03■□□□□ 0.16
SS18-202ENST00000269138 CACNA1SQ13698 1873 aa16.02■□□□□ 0.16
SS18-202ENST00000269138 ZBTB7BO15156 539 aaPredicted RBP16.02■□□□□ 0.15
SS18-202ENST00000269138 GNAI3P08754 354 aa16.02■□□□□ 0.15
SS18-202ENST00000269138 NFKBIEO00221 500 aa16.01■□□□□ 0.15
SS18-202ENST00000269138 RASSF7Q02833 373 aa16.01■□□□□ 0.15
SS18-202ENST00000269138 PDE3AQ14432 1141 aa16.01■□□□□ 0.15
SS18-202ENST00000269138 CCDC93Q567U6 631 aa16.01■□□□□ 0.15
SS18-202ENST00000269138 ANKRD18AQ8IVF6 992 aa16.01■□□□□ 0.15
SS18-202ENST00000269138 SP8Q8IXZ3 490 aa16.01■□□□□ 0.15
SS18-202ENST00000269138 ZNF594Q96JF6 807 aaPredicted RBP16.01■□□□□ 0.15
SS18-202ENST00000269138 CDC5LQ99459 802 aaKnown RBP16.01■□□□□ 0.15
SS18-202ENST00000269138 ARFGEF1Q9Y6D6 1849 aa16.01■□□□□ 0.15
SS18-202ENST00000269138 ANKRD18BA2A2Z9 1011 aa16■□□□□ 0.15
SS18-202ENST00000269138 PRELPP51888 382 aa16■□□□□ 0.15
SS18-202ENST00000269138 IFIT5Q13325 482 aaKnown RBP16■□□□□ 0.15
SS18-202ENST00000269138 MVPQ14764 893 aaKnown RBP16■□□□□ 0.15
SS18-202ENST00000269138 SOGA3Q5TF21 947 aa15.99■□□□□ 0.15
SS18-202ENST00000269138 C1orf115Q9H7X2 142 aa15.99■□□□□ 0.15
SS18-202ENST00000269138 MYH3P11055 1940 aa15.99■□□□□ 0.15
SS18-202ENST00000269138 SNED1Q8TER0 1413 aa15.99■□□□□ 0.15
SS18-202ENST00000269138 GNAI2P04899 355 aa15.99■□□□□ 0.15
SS18-202ENST00000269138 CCDC57Q2TAC2 916 aa15.99■□□□□ 0.15
SS18-202ENST00000269138 CC2D2BQ6DHV5 1058 aa15.99■□□□□ 0.15
SS18-202ENST00000269138 TMC4Q7Z404 712 aa15.99■□□□□ 0.15
SS18-202ENST00000269138 RTKN2Q8IZC4 609 aa15.99■□□□□ 0.15
SS18-202ENST00000269138 IGHMBP2P38935 993 aaKnown RBP15.98■□□□□ 0.15
SS18-202ENST00000269138 GPSM2P81274 684 aa15.98■□□□□ 0.15
SS18-202ENST00000269138 KLHDC4Q8TBB5 520 aa15.98■□□□□ 0.15
SS18-202ENST00000269138 BSDC1Q9NW68 430 aaPredicted RBP15.98■□□□□ 0.15
SS18-202ENST00000269138 HDAC5Q9UQL6 1122 aa15.98■□□□□ 0.15
SS18-202ENST00000269138 SUPT16HQ9Y5B9 1047 aaKnown RBP15.98■□□□□ 0.15
SS18-202ENST00000269138 RFX5P48382 616 aaPredicted RBP15.97■□□□□ 0.15
SS18-202ENST00000269138 TAF7LQ5H9L4 462 aa15.97■□□□□ 0.15
SS18-202ENST00000269138 TMX4Q9H1E5 349 aaPredicted RBP15.97■□□□□ 0.15
SS18-202ENST00000269138 TAOK3Q9H2K8 898 aa15.97■□□□□ 0.15
SS18-202ENST00000269138 MINPP1Q9UNW1 487 aa15.97■□□□□ 0.15
SS18-202ENST00000269138 FKBP4Q02790 459 aaKnown RBP eCLIP15.96■□□□□ 0.15
SS18-202ENST00000269138 MPNDQ8N594 471 aa15.96■□□□□ 0.15
SS18-202ENST00000269138 MPHOSPH8Q99549 860 aa15.96■□□□□ 0.15
SS18-202ENST00000269138 PUS3Q9BZE2 481 aaKnown RBP15.96■□□□□ 0.15
SS18-202ENST00000269138 ZNF277Q9NRM2 450 aaPredicted RBP15.96■□□□□ 0.15
SS18-202ENST00000269138 DDX19BQ9UMR2 479 aa15.96■□□□□ 0.15
SS18-202ENST00000269138 NSFL1CQ9UNZ2 370 aaKnown RBP15.96■□□□□ 0.15
SS18-202ENST00000269138 UTRNP46939 3433 aa15.96■□□□□ 0.15
SS18-202ENST00000269138 LTBP3Q9NS15 1303 aa15.95■□□□□ 0.14
SS18-202ENST00000269138 WTIPA6NIX2 430 aaPredicted RBP15.95■□□□□ 0.14
SS18-202ENST00000269138 DPP8Q6V1X1 898 aaPredicted RBP15.95■□□□□ 0.14
SS18-202ENST00000269138 C9orf131Q5VYM1 1079 aa15.94■□□□□ 0.14
SS18-202ENST00000269138 LDHAL6AQ6ZMR3 332 aa15.94■□□□□ 0.14
SS18-202ENST00000269138 PSMD1Q99460 953 aa15.94■□□□□ 0.14
SS18-202ENST00000269138 ZBTB40Q9NUA8 1239 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms