RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 CEP83Q9Y592 693 aa10.31□□□□□ -0.76
VAPB-201ENST00000265619 ADAMTSL3P82987 1691 aa10.31□□□□□ -0.76
VAPB-201ENST00000265619 FAM135BQ49AJ0 1406 aa10.3□□□□□ -0.76
VAPB-201ENST00000265619 GNAI3P08754 354 aa10.3□□□□□ -0.76
VAPB-201ENST00000265619 CCDC172P0C7W6 258 aa10.3□□□□□ -0.76
VAPB-201ENST00000265619 MCM2P49736 904 aa10.3□□□□□ -0.76
VAPB-201ENST00000265619 SMC1AQ14683 1233 aaKnown RBP10.3□□□□□ -0.76
VAPB-201ENST00000265619 CHRNA2Q15822 529 aa10.3□□□□□ -0.76
VAPB-201ENST00000265619 TTC31Q49AM3 519 aaPredicted RBP10.3□□□□□ -0.76
VAPB-201ENST00000265619 TEX35Q5T0J7 233 aa10.3□□□□□ -0.76
VAPB-201ENST00000265619 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.3□□□□□ -0.76
VAPB-201ENST00000265619 AK2P54819 239 aa10.3□□□□□ -0.76
VAPB-201ENST00000265619 ST3GAL1Q11201 340 aa10.3□□□□□ -0.76
VAPB-201ENST00000265619 CWC27Q6UX04 472 aaKnown RBP10.3□□□□□ -0.76
VAPB-201ENST00000265619 ANKRD44Q8N8A2 993 aa10.3□□□□□ -0.76
VAPB-201ENST00000265619 PLCD4Q9BRC7 762 aa10.3□□□□□ -0.76
VAPB-201ENST00000265619 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.3□□□□□ -0.764e-13■□□□□ 9.8
VAPB-201ENST00000265619 IL13P35225 146 aa10.3□□□□□ -0.76
VAPB-201ENST00000265619 ZNF165P49910 485 aa10.3□□□□□ -0.76
VAPB-201ENST00000265619 RASEFQ8IZ41 740 aa10.3□□□□□ -0.76
VAPB-201ENST00000265619 RILPL2Q969X0 211 aa10.3□□□□□ -0.76
VAPB-201ENST00000265619 A0A1B0GUL7 405 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 TMED8Q6PL24 325 aaPredicted RBP10.29□□□□□ -0.76
VAPB-201ENST00000265619 TMCO3Q6UWJ1 677 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 CCDC83Q8IWF9 413 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 MEIS3Q99687 375 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 CXorf56Q9H5V9 222 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 TFIP11Q9UBB9 837 aaKnown RBP10.29□□□□□ -0.76
VAPB-201ENST00000265619 IL16Q14005 1332 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 PLEKHG3A1L390 1219 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 VPS37CA5D8V6 355 aaPredicted RBP10.29□□□□□ -0.76
VAPB-201ENST00000265619 EIF3CLB5ME19 914 aaKnown RBP10.29□□□□□ -0.76
VAPB-201ENST00000265619 NR1I2O75469 434 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 CHMLP26374 656 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 GJB2P29033 226 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 EIF3CQ99613 913 aaKnown RBP10.29□□□□□ -0.76
VAPB-201ENST00000265619 TNMDQ9H2S6 317 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 MAP2P11137 1827 aaKnown RBP10.29□□□□□ -0.76
VAPB-201ENST00000265619 RGPD8O14715 1765 aaPredicted RBP10.29□□□□□ -0.76
VAPB-201ENST00000265619 FCHSD2O94868 740 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 TPM4P67936 248 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 SNW1Q13573 536 aaKnown RBP10.29□□□□□ -0.76
VAPB-201ENST00000265619 KRT28Q7Z3Y7 464 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 GOLGA5Q8TBA6 731 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 ERCC4Q92889 916 aaPredicted RBP10.29□□□□□ -0.76
VAPB-201ENST00000265619 PPP1R13BQ96KQ4 1090 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 PDRG1Q9NUG6 133 aa10.29□□□□□ -0.76
VAPB-201ENST00000265619 USP6P35125 1406 aa10.28□□□□□ -0.76
VAPB-201ENST00000265619 MAP4K4O95819 1239 aaPredicted RBP10.28□□□□□ -0.76
VAPB-201ENST00000265619 PLEKHO1Q53GL0 409 aaPredicted RBP10.28□□□□□ -0.76
VAPB-201ENST00000265619 BRMS1Q9HCU9 246 aa10.28□□□□□ -0.76
VAPB-201ENST00000265619 TUBGCP6Q96RT7 1819 aa10.28□□□□□ -0.76
VAPB-201ENST00000265619 NFE2L2Q16236 605 aa10.28□□□□□ -0.76
VAPB-201ENST00000265619 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.28□□□□□ -0.76
VAPB-201ENST00000265619 FBXW7Q969H0 707 aa10.28□□□□□ -0.76
VAPB-201ENST00000265619 ZNF335Q9H4Z2 1342 aaPredicted RBP10.28□□□□□ -0.76
VAPB-201ENST00000265619 N4BP1O75113 896 aaKnown RBP10.27□□□□□ -0.76
VAPB-201ENST00000265619 IQCB1Q15051 598 aa10.27□□□□□ -0.76
VAPB-201ENST00000265619 TTC14Q96N46 770 aa10.27□□□□□ -0.76
VAPB-201ENST00000265619 MBIPQ9NS73 344 aa10.27□□□□□ -0.76
VAPB-201ENST00000265619 SUFUQ9UMX1 484 aa10.27□□□□□ -0.76
VAPB-201ENST00000265619 COL3A1P02461 1466 aaPredicted RBP10.27□□□□□ -0.77
VAPB-201ENST00000265619 CC2D1AQ6P1N0 951 aaPredicted RBP10.27□□□□□ -0.77
VAPB-201ENST00000265619 CTR9Q6PD62 1173 aa10.27□□□□□ -0.77
VAPB-201ENST00000265619 CDC37L1Q7L3B6 337 aa10.27□□□□□ -0.77
VAPB-201ENST00000265619 NECAB1Q8N987 351 aa10.27□□□□□ -0.77
VAPB-201ENST00000265619 ARHGAP45Q92619 1136 aa10.27□□□□□ -0.77
VAPB-201ENST00000265619 ZNF622Q969S3 477 aaKnown RBP eCLIP10.27□□□□□ -0.771e-11■□□□□ 9.6
VAPB-201ENST00000265619 EYA1Q99502 592 aa10.27□□□□□ -0.77
VAPB-201ENST00000265619 HTATSF1O43719 755 aaKnown RBP10.27□□□□□ -0.77
VAPB-201ENST00000265619 ACTN2P35609 894 aa10.27□□□□□ -0.77
VAPB-201ENST00000265619 MAGEA9P43362 315 aa10.27□□□□□ -0.77
VAPB-201ENST00000265619 NBPF11Q86T75 865 aa10.27□□□□□ -0.77
VAPB-201ENST00000265619 CARD6Q9BX69 1037 aa10.27□□□□□ -0.77
VAPB-201ENST00000265619 SMC3Q9UQE7 1217 aa10.27□□□□□ -0.77
VAPB-201ENST00000265619 DLC1Q96QB1 1528 aa10.27□□□□□ -0.77
VAPB-201ENST00000265619 CPSF1Q10570 1443 aaKnown RBP10.27□□□□□ -0.77
VAPB-201ENST00000265619 MSH6P52701 1360 aa10.27□□□□□ -0.77
VAPB-201ENST00000265619 TMEM94Q12767 1356 aa10.27□□□□□ -0.77
VAPB-201ENST00000265619 KAT6BQ8WYB5 2073 aa10.26□□□□□ -0.77
VAPB-201ENST00000265619 KDM4FA0A1W2PPD8 638 aa10.26□□□□□ -0.77
VAPB-201ENST00000265619 SKIDA1Q1XH10 827 aa10.26□□□□□ -0.77
VAPB-201ENST00000265619 PIAS4Q8N2W9 510 aaPredicted RBP10.26□□□□□ -0.77
VAPB-201ENST00000265619 NLRP2Q9NX02 1062 aa10.26□□□□□ -0.77
VAPB-201ENST00000265619 SETD1AO15047 1707 aaKnown RBP10.26□□□□□ -0.77
VAPB-201ENST00000265619 TADA3O75528 432 aa10.26□□□□□ -0.77
VAPB-201ENST00000265619 PTPN21Q16825 1174 aa10.26□□□□□ -0.77
VAPB-201ENST00000265619 AXDND1Q5T1B0 1012 aaPredicted RBP10.26□□□□□ -0.77
VAPB-201ENST00000265619 SNX14Q9Y5W7 946 aa10.26□□□□□ -0.77
VAPB-201ENST00000265619 CCDC189A1A4V9 331 aa10.25□□□□□ -0.77
VAPB-201ENST00000265619 GSCP56915 257 aaPredicted RBP10.25□□□□□ -0.77
VAPB-201ENST00000265619 TWISTNBQ3B726 338 aaPredicted RBP10.25□□□□□ -0.77
VAPB-201ENST00000265619 TTLL5Q6EMB2 1281 aa10.25□□□□□ -0.77
VAPB-201ENST00000265619 UBXN4Q92575 508 aa10.25□□□□□ -0.77
VAPB-201ENST00000265619 KAT2BQ92831 832 aa10.25□□□□□ -0.77
VAPB-201ENST00000265619 PGBD1Q96JS3 809 aa10.25□□□□□ -0.77
VAPB-201ENST00000265619 FUT8Q9BYC5 575 aa10.25□□□□□ -0.77
VAPB-201ENST00000265619 DNAI1Q9UI46 699 aa10.25□□□□□ -0.77
VAPB-201ENST00000265619 DIP2AQ14689 1571 aa10.25□□□□□ -0.77
VAPB-201ENST00000265619 ARMCX5Q6P1M9 558 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms