RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.14■■■□□ 2.1
SMARCB1-201ENST00000263121 SSFA2P28290 1259 aa28.14■■■□□ 2.1
SMARCB1-201ENST00000263121 ATG9AQ7Z3C6 839 aa28.14■■■□□ 2.1
SMARCB1-201ENST00000263121 CIAO1O76071 339 aa28.13■■■□□ 2.09
SMARCB1-201ENST00000263121 HSP90B1P14625 803 aaKnown RBP28.13■■■□□ 2.09
SMARCB1-201ENST00000263121 IFIT5Q13325 482 aaKnown RBP28.13■■■□□ 2.09
SMARCB1-201ENST00000263121 TSHZ3Q63HK5 1081 aa28.13■■■□□ 2.09
SMARCB1-201ENST00000263121 ZNF594Q96JF6 807 aaPredicted RBP28.13■■■□□ 2.09
SMARCB1-201ENST00000263121 GREM2Q9H772 168 aa28.13■■■□□ 2.09
SMARCB1-201ENST00000263121 FBXO3Q9UK99 471 aa28.13■■■□□ 2.09
SMARCB1-201ENST00000263121 EYA2O00167 538 aa28.12■■■□□ 2.09
SMARCB1-201ENST00000263121 EAF2Q96CJ1 260 aaPredicted RBP28.12■■■□□ 2.09
SMARCB1-201ENST00000263121 HCLS1P14317 486 aaPredicted RBP28.11■■■□□ 2.09
SMARCB1-201ENST00000263121 IL15P40933 162 aaPredicted RBP28.11■■■□□ 2.09
SMARCB1-201ENST00000263121 AACSQ86V21 672 aa28.11■■■□□ 2.09
SMARCB1-201ENST00000263121 CCDC85AQ96PX6 553 aaPredicted RBP28.11■■■□□ 2.09
SMARCB1-201ENST00000263121 TTC41PQ6P2S7 1318 aa28.1■■■□□ 2.09
SMARCB1-201ENST00000263121 SEC24BO95487 1268 aa28.1■■■□□ 2.09
SMARCB1-201ENST00000263121 SDSP20132 328 aa28.1■■■□□ 2.09
SMARCB1-201ENST00000263121 TFCP2Q12800 502 aa28.1■■■□□ 2.09
SMARCB1-201ENST00000263121 BICDL1Q6ZP65 573 aa28.1■■■□□ 2.09
SMARCB1-201ENST00000263121 SETDB2Q96T68 719 aa28.1■■■□□ 2.09
SMARCB1-201ENST00000263121 IFIT2P09913 472 aaKnown RBP28.1■■■□□ 2.09
SMARCB1-201ENST00000263121 ITGA6P23229 1130 aa28.1■■■□□ 2.09
SMARCB1-201ENST00000263121 PI4K2BQ8TCG2 481 aa28.1■■■□□ 2.09
SMARCB1-201ENST00000263121 LRP5O75197 1615 aa28.09■■■□□ 2.09
SMARCB1-201ENST00000263121 LRRC24Q50LG9 513 aa28.09■■■□□ 2.09
SMARCB1-201ENST00000263121 ANKRD18BA2A2Z9 1011 aa28.08■■■□□ 2.09
SMARCB1-201ENST00000263121 NYXQ9GZU5 481 aa28.08■■■□□ 2.09
SMARCB1-201ENST00000263121 RTL9Q8NET4 1388 aa28.08■■■□□ 2.09
SMARCB1-201ENST00000263121 CDC45O75419 566 aa28.07■■■□□ 2.08
SMARCB1-201ENST00000263121 ERFEQ4G0M1 354 aa28.07■■■□□ 2.08
SMARCB1-201ENST00000263121 TNNI3KQ59H18 835 aa28.07■■■□□ 2.08
SMARCB1-201ENST00000263121 AKT1S1Q96B36 256 aa28.07■■■□□ 2.08
SMARCB1-201ENST00000263121 PUS3Q9BZE2 481 aaKnown RBP28.07■■■□□ 2.08
SMARCB1-201ENST00000263121 FPGT-TNNI3KV9GXZ4 949 aa28.07■■■□□ 2.08
SMARCB1-201ENST00000263121 ZNF827Q17R98 1081 aa28.06■■■□□ 2.08
SMARCB1-201ENST00000263121 TAF7LQ5H9L4 462 aa28.06■■■□□ 2.08
SMARCB1-201ENST00000263121 SLC10A5Q5PT55 438 aa28.06■■■□□ 2.08
SMARCB1-201ENST00000263121 GPATCH3Q96I76 525 aa28.06■■■□□ 2.08
SMARCB1-201ENST00000263121 GPR108Q9NPR9 543 aa28.06■■■□□ 2.08
SMARCB1-201ENST00000263121 ECHDC1Q9NTX5 307 aa28.06■■■□□ 2.08
SMARCB1-201ENST00000263121 TBC1D9Q6ZT07 1266 aa28.05■■■□□ 2.08
SMARCB1-201ENST00000263121 CCDC8Q9H0W5 538 aaPredicted RBP28.05■■■□□ 2.08
SMARCB1-201ENST00000263121 CASZ1Q86V15 1759 aa28.04■■■□□ 2.08
SMARCB1-201ENST00000263121 ABCC12Q96J65 1359 aa28.04■■■□□ 2.08
SMARCB1-201ENST00000263121 GYS1P13807 737 aa28.04■■■□□ 2.08
SMARCB1-201ENST00000263121 TLR7Q9NYK1 1049 aaKnown RBP28.04■■■□□ 2.08
SMARCB1-201ENST00000263121 CARMIL3Q8ND23 1372 aa28.04■■■□□ 2.08
SMARCB1-201ENST00000263121 CCDC152Q4G0S7 254 aa28.03■■■□□ 2.08
SMARCB1-201ENST00000263121 NBPF5PQ86XG9 351 aaPredicted RBP28.03■■■□□ 2.08
SMARCB1-201ENST00000263121 GLRX3O76003 335 aaKnown RBP28.03■■■□□ 2.08
SMARCB1-201ENST00000263121 NFIXQ14938 502 aa28.03■■■□□ 2.08
SMARCB1-201ENST00000263121 ERC2O15083 957 aa28.02■■■□□ 2.08
SMARCB1-201ENST00000263121 RIPOR2Q9Y4F9 1068 aa28.02■■■□□ 2.08
SMARCB1-201ENST00000263121 ZNF609O15014 1411 aa28.02■■■□□ 2.08
SMARCB1-201ENST00000263121 RIC1Q4ADV7 1423 aa28.02■■■□□ 2.08
SMARCB1-201ENST00000263121 SF3B3Q15393 1217 aaKnown RBP28.01■■■□□ 2.07
SMARCB1-201ENST00000263121 TPTE2Q6XPS3 522 aa28.01■■■□□ 2.07
SMARCB1-201ENST00000263121 DBNLQ9UJU6 430 aaKnown RBP28.01■■■□□ 2.07
SMARCB1-201ENST00000263121 LDHAL6AQ6ZMR3 332 aa28■■■□□ 2.07
SMARCB1-201ENST00000263121 TFCP2L1Q9NZI6 479 aa28■■■□□ 2.07
SMARCB1-201ENST00000263121 GTF2E1P29083 439 aaPredicted RBP28■■■□□ 2.07
SMARCB1-201ENST00000263121 CEP126Q9P2H0 1117 aa28■■■□□ 2.07
SMARCB1-201ENST00000263121 C3orf67Q6ZVT6 689 aa27.99■■■□□ 2.07
SMARCB1-201ENST00000263121 CAMKK2Q96RR4 588 aa27.99■■■□□ 2.07
SMARCB1-201ENST00000263121 SEC31BQ9NQW1 1179 aa27.98■■■□□ 2.07
SMARCB1-201ENST00000263121 TRIM6-TRIM34B2RNG4 842 aa27.97■■■□□ 2.07
SMARCB1-201ENST00000263121 TM4SF1P30408 202 aa27.97■■■□□ 2.07
SMARCB1-201ENST00000263121 DBNDD2Q9BQY9 259 aa27.97■■■□□ 2.07
SMARCB1-201ENST00000263121 UPF2Q9HAU5 1272 aaKnown RBP27.97■■■□□ 2.07
SMARCB1-201ENST00000263121 CNNM1Q9NRU3 951 aa27.97■■■□□ 2.07
SMARCB1-201ENST00000263121 MFAP1P55081 439 aaKnown RBP27.96■■■□□ 2.07
SMARCB1-201ENST00000263121 FLAD1Q8NFF5 587 aa27.96■■■□□ 2.07
SMARCB1-201ENST00000263121 RILPL2Q969X0 211 aa27.96■■■□□ 2.07
SMARCB1-201ENST00000263121 AK9Q5TCS8 1911 aa27.96■■■□□ 2.07
SMARCB1-201ENST00000263121 EN1Q05925 392 aaPredicted RBP27.95■■■□□ 2.07
SMARCB1-201ENST00000263121 EZH2Q15910 746 aaKnown RBP27.95■■■□□ 2.07
SMARCB1-201ENST00000263121 COL23A1Q86Y22 540 aaPredicted RBP27.95■■■□□ 2.07
SMARCB1-201ENST00000263121 AKAP2Q9Y2D5 859 aa27.95■■■□□ 2.07
SMARCB1-201ENST00000263121 COL4A1P02462 1669 aa27.95■■■□□ 2.06
SMARCB1-201ENST00000263121 TNRC6CQ9HCJ0 1690 aaKnown RBP27.95■■■□□ 2.06
SMARCB1-201ENST00000263121 METTL24Q5JXM2 366 aa27.94■■■□□ 2.06
SMARCB1-201ENST00000263121 CASC1Q6TDU7 716 aa27.94■■■□□ 2.06
SMARCB1-201ENST00000263121 VGLL2Q8N8G2 317 aa27.94■■■□□ 2.06
SMARCB1-201ENST00000263121 A0A1B0GUL7 405 aa27.94■■■□□ 2.06
SMARCB1-201ENST00000263121 ATP5JP18859 108 aa27.94■■■□□ 2.06
SMARCB1-201ENST00000263121 TIMM10P62072 90 aa27.94■■■□□ 2.06
SMARCB1-201ENST00000263121 CNTROBQ8N137 903 aa27.94■■■□□ 2.06
SMARCB1-201ENST00000263121 NLRP3Q96P20 1036 aa27.94■■■□□ 2.06
SMARCB1-201ENST00000263121 SPEF2Q9C093 1822 aa27.94■■■□□ 2.06
SMARCB1-201ENST00000263121 MAP4K4O95819 1239 aaPredicted RBP27.93■■■□□ 2.06
SMARCB1-201ENST00000263121 TBC1D32Q96NH3 1257 aa27.93■■■□□ 2.06
SMARCB1-201ENST00000263121 CDC5LQ99459 802 aaKnown RBP27.93■■■□□ 2.06
SMARCB1-201ENST00000263121 MROH5Q6ZUA9 1318 aa27.92■■■□□ 2.06
SMARCB1-201ENST00000263121 EIF5BO60841 1220 aaKnown RBP27.92■■■□□ 2.06
SMARCB1-201ENST00000263121 ANP32AP39687 249 aaKnown RBP27.92■■■□□ 2.06
SMARCB1-201ENST00000263121 CNBD1Q8NA66 436 aa27.92■■■□□ 2.06
SMARCB1-201ENST00000263121 NEUROD6Q96NK8 337 aa27.92■■■□□ 2.06
SMARCB1-201ENST00000263121 PNPLA7Q6ZV29 1317 aa27.91■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms