RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 MAP3K11Q16584 847 aa15.43■□□□□ 0.06
SNX1-201ENST00000261889 PHF8Q9UPP1 1060 aa15.43■□□□□ 0.06
SNX1-201ENST00000261889 CCT2P78371 535 aaKnown RBP15.43■□□□□ 0.06
SNX1-201ENST00000261889 SLC39A6Q13433 755 aa15.43■□□□□ 0.06
SNX1-201ENST00000261889 TPD52L1Q16890 204 aaPredicted RBP15.43■□□□□ 0.06
SNX1-201ENST00000261889 EAF2Q96CJ1 260 aaPredicted RBP15.43■□□□□ 0.06
SNX1-201ENST00000261889 TNNT1P13805 278 aa15.42■□□□□ 0.06
SNX1-201ENST00000261889 CACTINQ8WUQ7 758 aaKnown RBP15.42■□□□□ 0.06
SNX1-201ENST00000261889 ORAI2Q96SN7 254 aa15.42■□□□□ 0.06
SNX1-201ENST00000261889 BRINP3Q76B58 766 aa15.42■□□□□ 0.06
SNX1-201ENST00000261889 FAM184AQ8NB25 1140 aa15.42■□□□□ 0.06
SNX1-201ENST00000261889 PHLPP1O60346 1717 aa15.42■□□□□ 0.06
SNX1-201ENST00000261889 ERICH4A6NGS2 130 aa15.42■□□□□ 0.06
SNX1-201ENST00000261889 OTUD7BQ6GQQ9 843 aa15.42■□□□□ 0.06
SNX1-201ENST00000261889 NCOA5Q9HCD5 579 aaKnown RBP15.42■□□□□ 0.06
SNX1-201ENST00000261889 SOS2Q07890 1332 aaPredicted RBP15.42■□□□□ 0.06
SNX1-201ENST00000261889 LMO7Q8WWI1 1683 aa15.42■□□□□ 0.06
SNX1-201ENST00000261889 TMX1Q9H3N1 280 aa15.41■□□□□ 0.06
SNX1-201ENST00000261889 KRT85P78386 507 aa15.41■□□□□ 0.06
SNX1-201ENST00000261889 AEBP2Q6ZN18 517 aaPredicted RBP15.41■□□□□ 0.06
SNX1-201ENST00000261889 ZNF771Q7L3S4 317 aaPredicted RBP15.41■□□□□ 0.06
SNX1-201ENST00000261889 SMAP1Q8IYB5 467 aaPredicted RBP15.41■□□□□ 0.06
SNX1-201ENST00000261889 ZKSCAN1P17029 563 aaPredicted RBP15.41■□□□□ 0.06
SNX1-201ENST00000261889 ZNF165P49910 485 aa15.41■□□□□ 0.06
SNX1-201ENST00000261889 C11orf57Q6ZUT1 292 aaPredicted RBP15.41■□□□□ 0.06
SNX1-201ENST00000261889 BIN1O00499 593 aa15.4■□□□□ 0.06
SNX1-201ENST00000261889 HOXC9P31274 260 aa15.4■□□□□ 0.06
SNX1-201ENST00000261889 NCBP1Q09161 790 aaKnown RBP15.4■□□□□ 0.06
SNX1-201ENST00000261889 GORABQ5T7V8 394 aa15.4■□□□□ 0.06
SNX1-201ENST00000261889 NBPF6Q5VWK0 638 aa15.4■□□□□ 0.06
SNX1-201ENST00000261889 PGBD1Q96JS3 809 aa15.4■□□□□ 0.06
SNX1-201ENST00000261889 NBPF4Q96M43 638 aa15.4■□□□□ 0.06
SNX1-201ENST00000261889 GJB4Q9NTQ9 266 aa15.4■□□□□ 0.06
SNX1-201ENST00000261889 PODXL2Q9NZ53 605 aa15.4■□□□□ 0.06
SNX1-201ENST00000261889 CLIP2Q9UDT6 1046 aa15.4■□□□□ 0.06
SNX1-201ENST00000261889 TEFQ10587 303 aa15.4■□□□□ 0.06
SNX1-201ENST00000261889 BEND3Q5T5X7 828 aa15.4■□□□□ 0.06
SNX1-201ENST00000261889 SLAIN2Q9P270 581 aa15.4■□□□□ 0.06
SNX1-201ENST00000261889 CGNQ9P2M7 1197 aaKnown RBP15.4■□□□□ 0.06
SNX1-201ENST00000261889 SLC27A2O14975 620 aa15.39■□□□□ 0.05
SNX1-201ENST00000261889 HSP90AA4PQ58FG1 418 aa15.39■□□□□ 0.05
SNX1-201ENST00000261889 FAM200AQ8TCP9 573 aa15.39■□□□□ 0.05
SNX1-201ENST00000261889 PRIMPOLQ96LW4 560 aa15.39■□□□□ 0.05
SNX1-201ENST00000261889 BICC1Q9H694 974 aaKnown RBP15.39■□□□□ 0.05
SNX1-201ENST00000261889 ECHDC1Q9NTX5 307 aa15.39■□□□□ 0.05
SNX1-201ENST00000261889 CCDC171Q6TFL3 1326 aa15.39■□□□□ 0.05
SNX1-201ENST00000261889 ATF3P18847 181 aa15.39■□□□□ 0.05
SNX1-201ENST00000261889 HMGN5P82970 282 aaKnown RBP15.39■□□□□ 0.05
SNX1-201ENST00000261889 DMTNQ08495 405 aa15.39■□□□□ 0.05
SNX1-201ENST00000261889 BRF1Q92994 677 aa15.39■□□□□ 0.05
SNX1-201ENST00000261889 SUCLG2Q96I99 432 aa15.39■□□□□ 0.05
SNX1-201ENST00000261889 TNS3Q68CZ2 1445 aa15.39■□□□□ 0.05
SNX1-201ENST00000261889 BTBD11A6QL63 1104 aa15.39■□□□□ 0.05
SNX1-201ENST00000261889 HSP90AB3PQ58FF7 597 aa15.39■□□□□ 0.05
SNX1-201ENST00000261889 BLOC1S2Q6QNY1 142 aa15.39■□□□□ 0.05
SNX1-201ENST00000261889 DDX46Q7L014 1031 aaKnown RBP15.39■□□□□ 0.05
SNX1-201ENST00000261889 GLRX3O76003 335 aaKnown RBP15.38■□□□□ 0.05
SNX1-201ENST00000261889 H3BQV1 296 aa15.38■□□□□ 0.05
SNX1-201ENST00000261889 IFFO2Q5TF58 517 aa15.38■□□□□ 0.05
SNX1-201ENST00000261889 ATP6V1DQ9Y5K8 247 aa15.38■□□□□ 0.05
SNX1-201ENST00000261889 SRCAPQ6ZRS2 3230 aa15.38■□□□□ 0.05
SNX1-201ENST00000261889 SASH1O94885 1247 aa15.38■□□□□ 0.05
SNX1-201ENST00000261889 UVSSAQ2YD98 709 aa15.38■□□□□ 0.05
SNX1-201ENST00000261889 ZSCAN25Q6NSZ9 544 aa15.38■□□□□ 0.05
SNX1-201ENST00000261889 LEO1Q8WVC0 666 aaPredicted RBP15.38■□□□□ 0.05
SNX1-201ENST00000261889 SPTLC3Q9NUV7 552 aa15.38■□□□□ 0.05
SNX1-201ENST00000261889 ZNF530Q6P9A1 599 aaPredicted RBP15.37■□□□□ 0.05
SNX1-201ENST00000261889 LRRN4CLQ8ND94 238 aa15.37■□□□□ 0.05
SNX1-201ENST00000261889 GPHNQ9NQX3 736 aaPredicted RBP15.37■□□□□ 0.05
SNX1-201ENST00000261889 GOLGA8FQ08AF8 430 aa15.37■□□□□ 0.05
SNX1-201ENST00000261889 GOLGA8DPQ0D2H9 430 aa15.37■□□□□ 0.05
SNX1-201ENST00000261889 ATP5J2-PTCD1G3V325 749 aa15.36■□□□□ 0.05
SNX1-201ENST00000261889 PTCD1O75127 700 aaKnown RBP15.36■□□□□ 0.05
SNX1-201ENST00000261889 POLA2Q14181 598 aa15.36■□□□□ 0.05
SNX1-201ENST00000261889 TOB2Q14106 344 aaPredicted RBP15.36■□□□□ 0.05
SNX1-201ENST00000261889 NECTIN1Q15223 517 aa15.36■□□□□ 0.05
SNX1-201ENST00000261889 EPHA10Q5JZY3 1008 aa15.36■□□□□ 0.05
SNX1-201ENST00000261889 TMEM87AQ8NBN3 555 aa15.36■□□□□ 0.05
SNX1-201ENST00000261889 CCDC85AQ96PX6 553 aaPredicted RBP15.36■□□□□ 0.05
SNX1-201ENST00000261889 ZSWIM6Q9HCJ5 1215 aa15.36■□□□□ 0.05
SNX1-201ENST00000261889 FLT4P35916 1363 aa15.36■□□□□ 0.05
SNX1-201ENST00000261889 EIF4A1P60842 406 aaKnown RBP15.36■□□□□ 0.05
SNX1-201ENST00000261889 ESCO1Q5FWF5 840 aa15.35■□□□□ 0.05
SNX1-201ENST00000261889 IGSF1Q8N6C5 1336 aa15.35■□□□□ 0.05
SNX1-201ENST00000261889 FAM208AQ9UK61 1670 aaKnown RBP15.35■□□□□ 0.05
SNX1-201ENST00000261889 ZNF75DP51815 510 aa15.35■□□□□ 0.05
SNX1-201ENST00000261889 VPS53Q5VIR6 699 aa15.35■□□□□ 0.05
SNX1-201ENST00000261889 FAM177A1Q8N128 213 aaPredicted RBP15.35■□□□□ 0.05
SNX1-201ENST00000261889 ZNF215Q9UL58 517 aaPredicted RBP15.35■□□□□ 0.05
SNX1-201ENST00000261889 RGPD5Q99666 1765 aa15.35■□□□□ 0.05
SNX1-201ENST00000261889 G3BP1Q13283 466 aaKnown RBP eCLIP15.34■□□□□ 0.05
SNX1-201ENST00000261889 Q6ZUG5 572 aa15.34■□□□□ 0.05
SNX1-201ENST00000261889 VGLL3A8MV65 326 aa15.34■□□□□ 0.05
SNX1-201ENST00000261889 GOLGA6L6A8MZA4 724 aa15.34■□□□□ 0.05
SNX1-201ENST00000261889 ELF2Q15723 593 aa15.34■□□□□ 0.05
SNX1-201ENST00000261889 MAP3K5Q99683 1374 aa15.34■□□□□ 0.05
SNX1-201ENST00000261889 APOBRQ0VD83 1088 aa15.33■□□□□ 0.05
SNX1-201ENST00000261889 CCDC112Q8NEF3 446 aa15.33■□□□□ 0.05
SNX1-201ENST00000261889 RUFY2Q8WXA3 655 aa15.33■□□□□ 0.05
SNX1-201ENST00000261889 KAZALD1Q96I82 304 aa15.33■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 465.5 ms