RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 CCDC103Q8IW40 242 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 OR9I1Q8NGQ6 314 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 LRRC8CQ8TDW0 803 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 SMAP2Q8WU79 429 aaPredicted RBP16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 VPS33AQ96AX1 596 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 TRMT61AQ96FX7 289 aaKnown RBP16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 SPATA9Q9BWV2 254 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 HEATR1Q9H583 2144 aaKnown RBP16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 BCL2L10Q9HD36 194 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 TCF7L2Q9NQB0 619 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 RLIMQ9NVW2 624 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 TMEM45AQ9NWC5 275 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 MGAT4BQ9UQ53 548 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 ZNF443Q9Y2A4 671 aaPredicted RBP16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 PCDHB14Q9Y5E9 798 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 CCT8L1PA6NM43 557 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 H7C1Q1 480 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 OVOL3O00110 214 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 CLIC1O00299 241 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 HEXAP06865 529 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 DANCRP0C864 163 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 BMP2P12643 396 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 IDUAP35475 653 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 SLC17A1Q14916 467 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 RGNQ15493 299 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 ZNF836Q6ZNA1 936 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 TMEM19Q96HH6 336 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 MUS81Q96NY9 551 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 CCDC28BQ9BUN5 200 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 SF3B5Q9BWJ5 86 aaKnown RBP16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 TRIM2Q9C040 744 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 GRIP2Q9C0E4 1043 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 PAIP1Q9H074 479 aaKnown RBP16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 A4GALTQ9NPC4 353 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 FAIMQ9NVQ4 179 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 FLVCR1Q9Y5Y0 555 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 HIVEP2P31629 2446 aa16.82■□□□□ 0.28
CCDC28A-203ENST00000617445 ABCA2Q9BZC7 2435 aa16.81■□□□□ 0.28
CCDC28A-203ENST00000617445 A8MVM7 634 aa16.81■□□□□ 0.28
CCDC28A-203ENST00000617445 GKN3PP0CG01 181 aa16.81■□□□□ 0.28
CCDC28A-203ENST00000617445 PPIBP23284 216 aaKnown RBP16.81■□□□□ 0.28
CCDC28A-203ENST00000617445 TGFBR3Q03167 851 aa16.81■□□□□ 0.28
CCDC28A-203ENST00000617445 KLHL17Q6TDP4 642 aa16.81■□□□□ 0.28
CCDC28A-203ENST00000617445 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.81■□□□□ 0.28
CCDC28A-203ENST00000617445 GOLGA6L1Q8N7Z2 621 aa16.81■□□□□ 0.28
CCDC28A-203ENST00000617445 TMEM45BQ96B21 275 aa16.81■□□□□ 0.28
CCDC28A-203ENST00000617445 AURKBQ96GD4 344 aaPredicted RBP16.81■□□□□ 0.28
CCDC28A-203ENST00000617445 SMR3AQ99954 134 aa16.81■□□□□ 0.28
CCDC28A-203ENST00000617445 UPB1Q9UBR1 384 aa16.81■□□□□ 0.28
CCDC28A-203ENST00000617445 DCTN4Q9UJW0 460 aa16.81■□□□□ 0.28
CCDC28A-203ENST00000617445 A0A1W2PP18 115 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 ZC3H12DA2A288 527 aaKnown RBP16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 LIPT2A6NK58 231 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 RAMP1O60894 148 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 VAMP5O95183 116 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 IGHV3-9P01782 118 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 NCF2P19878 526 aaPredicted RBP16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 PTAFRP25105 342 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 NTF4P34130 210 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 FAPQ12884 760 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 GTDC1Q4AE62 458 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 OTUD3Q5T2D3 398 aaPredicted RBP16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 BLOC1S3Q6QNY0 202 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 TMEM108Q6UXF1 575 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 CASP12Q6UXS9 341 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 CLIP4Q8N3C7 705 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 CADM2Q8N3J6 435 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 C17orf78Q8N4C9 275 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 C1orf162Q8NEQ5 155 aaPredicted RBP16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 BBS10Q8TAM1 723 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 GTPBP3Q969Y2 492 aaKnown RBP16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 DNAJA3Q96EY1 480 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 ATP6V1G3Q96LB4 118 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 TAPBPLQ9BX59 468 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 CISD1Q9NZ45 108 aaKnown RBP16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 GMEB1Q9Y692 573 aa16.8■□□□□ 0.28
CCDC28A-203ENST00000617445 PDLIM1O00151 329 aa16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 RAD51DO75771 328 aa16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 SOD3P08294 240 aa16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 ETS2P15036 469 aa16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 IDH3AP50213 366 aa16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 CEACAM7Q14002 265 aa16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 ZNF311Q5JNZ3 666 aa16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 LRIF1Q5T3J3 769 aa16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 SLC2A7Q6PXP3 512 aa16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 CIARTQ8N365 385 aaPredicted RBP16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 POMGNT2Q8NAT1 580 aa16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 KBTBD8Q8NFY9 601 aa16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 STK35Q8TDR2 534 aa16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 AMBRA1Q9C0C7 1298 aa16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 SLC25A15Q9Y619 301 aa16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 ZANQ9Y493 2812 aa16.79■□□□□ 0.28
CCDC28A-203ENST00000617445 TRIM64A6NGJ6 449 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 TRIM64BA6NI03 449 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 AQP7P3A6NL99 342 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 SHISA9B4DS77 424 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 C5orf58C9J3I9 102 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 LY6G6DO95868 133 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 HOXB9P17482 250 aaPredicted RBP16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 ATP4BP51164 291 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms