RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CMPK1P30085 196 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 C21orf58P58505 322 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 ZNF85Q03923 595 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 SWI5Q1ZZU3 235 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 MBOAT2Q6ZWT7 520 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 NRROSQ86YC3 692 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 OR4D10Q8NGI6 311 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 HCAR2Q8TDS4 363 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 ZDHHC1Q8WTX9 485 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 RLN3Q8WXF3 142 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 ATOH1Q92858 354 aaPredicted RBP7.97□□□□□ -1.13
USP40-203ENST00000427112 WDFY2Q96P53 400 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 TRPV4Q9HBA0 871 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 NFKBIL1Q9UBC1 381 aaPredicted RBP7.97□□□□□ -1.13
USP40-203ENST00000427112 RPS6KB2Q9UBS0 482 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 NDOR1Q9UHB4 597 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 TBX21Q9UL17 535 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 FARSAQ9Y285 508 aaKnown RBP7.97□□□□□ -1.13
USP40-203ENST00000427112 KNTC1P50748 2209 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 TTLL8A6PVC2 850 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 EIF1AYO14602 144 aaKnown RBP7.97□□□□□ -1.13
USP40-203ENST00000427112 FLRT2O43155 660 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 SLC22A5O76082 557 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 SBK2P0C263 348 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 SLC35G6P0C7Q6 338 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 ANXA3P12429 323 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 NKPD1Q17RQ9 610 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 AGBL4Q5VU57 503 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 ARSKQ6UWY0 536 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 RANBP3LQ86VV4 465 aaPredicted RBP7.97□□□□□ -1.13
USP40-203ENST00000427112 MOSPD2Q8NHP6 518 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 HAVCR2Q8TDQ0 301 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 ZNF514Q96K75 400 aaPredicted RBP7.97□□□□□ -1.13
USP40-203ENST00000427112 MENTQ9BUN1 341 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 SLC17A9Q9BYT1 436 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 ACSS1Q9NUB1 689 aaPredicted RBP7.97□□□□□ -1.13
USP40-203ENST00000427112 SLCO1C1Q9NYB5 712 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 FLRT3Q9NZU0 649 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 THSD7BQ9C0I4 1608 aa7.97□□□□□ -1.13
USP40-203ENST00000427112 PHF3Q92576 2039 aaKnown RBP7.97□□□□□ -1.13
USP40-203ENST00000427112 KDM4EB2RXH2 506 aaPredicted RBP7.96□□□□□ -1.13
USP40-203ENST00000427112 CCSO14618 274 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 VEGFDO43915 354 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 RNGTTO60942 597 aaKnown RBP7.96□□□□□ -1.13
USP40-203ENST00000427112 MYF5P13349 255 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 MAOAP21397 527 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 BTCP35070 178 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 AQP2P41181 271 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 ZNF136P52737 540 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 MAZP56270 477 aaKnown RBP7.96□□□□□ -1.13
USP40-203ENST00000427112 GNA13Q14344 377 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 ASPGQ86U10 573 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 OR5M1Q8NGP8 315 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 OR51Q1Q8NH59 317 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 FAM3CQ92520 227 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 POP5Q969H6 163 aaKnown RBP7.96□□□□□ -1.13
USP40-203ENST00000427112 C3orf49Q96BT1 292 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 METTL2AQ96IZ6 378 aaKnown RBP7.96□□□□□ -1.13
USP40-203ENST00000427112 MARVELD1Q9BSK0 173 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 PTDSS2Q9BVG9 487 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 FGF20Q9NP95 211 aaPredicted RBP7.96□□□□□ -1.13
USP40-203ENST00000427112 ZFP64Q9NPA5 681 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 FBXL2Q9UKC9 423 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 PRR32B1ATL7 298 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 M0R233 179 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 DPM1O60762 260 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 PDGFAP04085 211 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 ITPKBP27987 946 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 IGFALSP35858 605 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 GAS6Q14393 721 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 FAM69AQ5T7M9 428 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 HBMQ6B0K9 141 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 HEPHL1Q6MZM0 1159 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 FBXO42Q6P3S6 717 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 MDGA2Q7Z553 956 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 RASGRP3Q8IV61 690 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 ZBTB44Q8NCP5 570 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 RPLP0P6Q8NHW5 317 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 YIPF5Q969M3 257 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 SEC22AQ96IW7 307 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 TIMP4Q99727 224 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 PRSS27Q9BQR3 290 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 TMEM27Q9HBJ8 222 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 PAK6Q9NQU5 681 aaPredicted RBP7.96□□□□□ -1.13
USP40-203ENST00000427112 HRASLS2Q9NWW9 162 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 IL20Q9NYY1 176 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 ACAD8Q9UKU7 415 aa7.96□□□□□ -1.13
USP40-203ENST00000427112 NBEAQ8NFP9 2946 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 SERTM1A2A2V5 107 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 TRAPPC13A5PLN9 417 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 METTL12A8MUP2 240 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 B4DGG1 531 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 H0YGG7 62 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 GPR171O14626 319 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 CLEC3AO75596 197 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 LSSP48449 732 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 PER3P56645 1201 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 ARF3P61204 181 aaPredicted RBP7.96□□□□□ -1.14
USP40-203ENST00000427112 RGS1Q08116 209 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 EIF2B5Q13144 721 aaKnown RBP7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms