RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ARL5BQ96KC2 179 aa26.62■■□□□ 1.85
LIMCH1-211ENST00000509638 TUBA1CQ9BQE3 449 aa26.62■■□□□ 1.85
LIMCH1-211ENST00000509638 ARHGAP21Q5T5U3 1957 aa26.62■■□□□ 1.85
LIMCH1-211ENST00000509638 A8MVM7 634 aa26.61■■□□□ 1.85
LIMCH1-211ENST00000509638 ADAMDEC1O15204 470 aa26.61■■□□□ 1.85
LIMCH1-211ENST00000509638 WDR1O75083 606 aa26.61■■□□□ 1.85
LIMCH1-211ENST00000509638 NQO1P15559 274 aaKnown RBP26.61■■□□□ 1.85
LIMCH1-211ENST00000509638 FKBP2P26885 142 aaKnown RBP26.61■■□□□ 1.85
LIMCH1-211ENST00000509638 IFNA8P32881 189 aa26.61■■□□□ 1.85
LIMCH1-211ENST00000509638 MAGEA2P43356 314 aa26.61■■□□□ 1.85
LIMCH1-211ENST00000509638 FOXD4Q12950 439 aaPredicted RBP26.61■■□□□ 1.85
LIMCH1-211ENST00000509638 HBMQ6B0K9 141 aa26.61■■□□□ 1.85
LIMCH1-211ENST00000509638 OR10D3Q8NH80 312 aa26.61■■□□□ 1.85
LIMCH1-211ENST00000509638 FNDC11Q9BVV2 318 aa26.61■■□□□ 1.85
LIMCH1-211ENST00000509638 TP63Q9H3D4 680 aaPredicted RBP26.61■■□□□ 1.85
LIMCH1-211ENST00000509638 IGKV1D-42A0A075B6H8 117 aa26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 TRGV8A0A0C4DH27 118 aa26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 PYCARD-AS1I3L0S3 204 aa26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 THRBP10828 461 aa26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 RHCEP18577 417 aa26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 CASP6P55212 293 aa26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 MYBPHQ13203 477 aa26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 CCNIQ14094 377 aa26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 ACSF3Q4G176 576 aaPredicted RBP26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 C1QL3Q5VWW1 255 aa26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 P3H2Q8IVL5 708 aa26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 ZNF845Q96IR2 970 aaPredicted RBP26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 MPP4Q96JB8 637 aa26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 PIP5K1AQ99755 562 aa26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 PRSS27Q9BQR3 290 aa26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 FLNCQ14315 2725 aa26.6■■□□□ 1.85
LIMCH1-211ENST00000509638 RAP2AP10114 183 aa26.59■■□□□ 1.85
LIMCH1-211ENST00000509638 UMPSP11172 480 aa26.59■■□□□ 1.85
LIMCH1-211ENST00000509638 GABRA1P14867 456 aa26.59■■□□□ 1.85
LIMCH1-211ENST00000509638 FUT4P22083 530 aa26.59■■□□□ 1.85
LIMCH1-211ENST00000509638 ACVR2AP27037 513 aa26.59■■□□□ 1.85
LIMCH1-211ENST00000509638 RPS3AP61247 264 aaKnown RBP26.59■■□□□ 1.85
LIMCH1-211ENST00000509638 EGR4Q05215 589 aa26.59■■□□□ 1.85
LIMCH1-211ENST00000509638 ST3GAL3Q11203 375 aa26.59■■□□□ 1.85
LIMCH1-211ENST00000509638 EIF2S3LQ2VIR3 472 aaKnown RBP26.59■■□□□ 1.85
LIMCH1-211ENST00000509638 MAN2C1Q9NTJ4 1040 aa26.59■■□□□ 1.85
LIMCH1-211ENST00000509638 HDGFL3Q9Y3E1 203 aa26.59■■□□□ 1.85
LIMCH1-211ENST00000509638 PHF3Q92576 2039 aaKnown RBP26.59■■□□□ 1.85
LIMCH1-211ENST00000509638 CLCA1A8K7I4 914 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 AHRRA9YTQ3 701 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 NPIPB7O75200 414 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 STSP08842 583 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 CA7P43166 264 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 CLK1P49759 484 aaKnown RBP26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 PDSS1Q5T2R2 415 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 C1orf140Q5VVS0 124 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 LINC00114Q6XXX2 140 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 CHMP1BQ7LBR1 199 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 PIWIL3Q7Z3Z3 882 aaKnown RBP26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 NKAIN4Q8IVV8 208 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 ZPLD1Q8TCW7 415 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 STK35Q8TDR2 534 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 ZNF426Q9BUY5 554 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 NMNAT1Q9HAN9 279 aaPredicted RBP26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 FAM215AQ9Y5M1 114 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 CXCL13O43927 109 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 DIO1P49895 249 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 C1orf185Q5T7R7 199 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 PLXDC2Q6UX71 529 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 PRR7Q8TB68 274 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 TMEM255BQ8WV15 326 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 TRIB1Q96RU8 372 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 TMEM43Q9BTV4 400 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 TESMINQ9Y4I5 508 aa26.58■■□□□ 1.85
LIMCH1-211ENST00000509638 KDM4EB2RXH2 506 aaPredicted RBP26.57■■□□□ 1.84
LIMCH1-211ENST00000509638 PTGER4P35408 488 aa26.57■■□□□ 1.84
LIMCH1-211ENST00000509638 SPIBQ01892 262 aa26.57■■□□□ 1.84
LIMCH1-211ENST00000509638 KPNB1Q14974 876 aaKnown RBP26.57■■□□□ 1.84
LIMCH1-211ENST00000509638 SGCBQ16585 318 aa26.57■■□□□ 1.84
LIMCH1-211ENST00000509638 RPTNQ6XPR3 784 aa26.57■■□□□ 1.84
LIMCH1-211ENST00000509638 RPRMLQ8N4K4 120 aa26.57■■□□□ 1.84
LIMCH1-211ENST00000509638 PIK3C3Q8NEB9 887 aa26.57■■□□□ 1.84
LIMCH1-211ENST00000509638 ZNF347Q96SE7 839 aa26.57■■□□□ 1.84
LIMCH1-211ENST00000509638 SRXN1Q9BYN0 137 aa26.57■■□□□ 1.84
LIMCH1-211ENST00000509638 ANKRD65E5RJM6 399 aa26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 AHSA1O95433 338 aa26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 H1F0P07305 194 aaKnown RBP26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 PLA2G2AP14555 144 aa26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 IDUAP35475 653 aa26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 CARD18P57730 90 aa26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 TRAM2Q15035 370 aa26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 RTL6Q6ICC9 239 aa26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 PPP4R4Q6NUP7 873 aa26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 TMPPEQ6ZT21 453 aa26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 OSTF1Q92882 214 aa26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 KTI12Q96EK9 354 aaPredicted RBP26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 CHID1Q9BWS9 393 aa26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 POTEKPQ9BYX7 375 aa26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 PAQR5Q9NXK6 330 aaPredicted RBP26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 DOCK7Q96N67 2140 aa26.56■■□□□ 1.84
LIMCH1-211ENST00000509638 SULT2B1O00204 365 aa26.55■■□□□ 1.84
LIMCH1-211ENST00000509638 KPNA4O00629 521 aaPredicted RBP26.55■■□□□ 1.84
LIMCH1-211ENST00000509638 IMPDH2P12268 514 aa26.55■■□□□ 1.84
LIMCH1-211ENST00000509638 RBM34P42696 430 aaKnown RBP26.55■■□□□ 1.84
LIMCH1-211ENST00000509638 ACTR3P61158 418 aa26.55■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms