RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 COPZ1P61923 177 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 RPS26P62854 115 aaKnown RBP6.25□□□□□ -1.41
VPS41-208ENST00000448833 CHRNB3Q05901 458 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 DMTNQ08495 405 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 TNK1Q13470 666 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 RAB35Q15286 201 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 NDUFAF6Q330K2 333 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 FAM174BQ3ZCQ3 159 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 LINC01559Q495D7 138 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 HHATQ5VTY9 493 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 ATG16L1Q676U5 607 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 ABLIM2Q6H8Q1 611 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 TNFAIP8L2Q6P589 184 aaPredicted RBP6.25□□□□□ -1.41
VPS41-208ENST00000448833 SLC22A25Q6T423 547 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 LRRC74BQ6ZQY2 392 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 ZNF621Q6ZSS3 439 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 DTX2Q86UW9 622 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 ADGRG3Q86Y34 549 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 FBXL14Q8N1E6 418 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 ZNF433Q8N7K0 673 aaPredicted RBP6.25□□□□□ -1.41
VPS41-208ENST00000448833 POMGNT2Q8NAT1 580 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 LILRB1Q8NHL6 650 aaPredicted RBP6.25□□□□□ -1.41
VPS41-208ENST00000448833 ZNF75CPQ92670 426 aaPredicted RBP6.25□□□□□ -1.41
VPS41-208ENST00000448833 RAB8BQ92930 207 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 PPP1R36Q96LQ0 422 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 MUS81Q96NY9 551 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 OR52E6Q96RD3 313 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 SF3B5Q9BWJ5 86 aaKnown RBP6.25□□□□□ -1.41
VPS41-208ENST00000448833 REG4Q9BYZ8 158 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 NUF2Q9BZD4 464 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 QRSL1Q9H0R6 528 aaKnown RBP6.25□□□□□ -1.41
VPS41-208ENST00000448833 CENPHQ9H3R5 247 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 RMND5AQ9H871 391 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 CTPS2Q9NRF8 586 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 THAP1Q9NVV9 213 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 MALT1Q9UDY8 824 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 PRSS50Q9UI38 385 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 KCNE5Q9UJ90 142 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 DCTN4Q9UJW0 460 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 ING1Q9UK53 422 aaPredicted RBP6.25□□□□□ -1.41
VPS41-208ENST00000448833 FBXO9Q9UK97 447 aaPredicted RBP6.25□□□□□ -1.41
VPS41-208ENST00000448833 POU2F3Q9UKI9 436 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 AMDHD2Q9Y303 409 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 PMF1-BGLAPU3KQ54 211 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 YLPM1P49750 1951 aaKnown RBP6.25□□□□□ -1.41
VPS41-208ENST00000448833 CR1P17927 2039 aa6.25□□□□□ -1.41
VPS41-208ENST00000448833 TMED7-TICAM2A0A0A6YYA0 188 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 CFAP73A6NFT4 308 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 ZNF716A6NP11 495 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 VSTM5A8MXK1 200 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 C9JVG2 144 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 HMGN4O00479 90 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 RFXANKO14593 260 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 HDAC3O15379 428 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 ITM2AO43736 263 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 CRLF1O75462 422 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 H6PDO95479 791 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 ANP32DO95626 131 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 WNT11O96014 354 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 SOD3P08294 240 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 CSF3P09919 207 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 CREB1P16220 341 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 TTKP33981 857 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 SLC18A1P54219 525 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 CASP9P55211 416 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 CDH11P55287 796 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 PRPS1P60891 318 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 H3F3AP84243 136 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 CHRNEQ04844 493 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 FAPQ12884 760 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 LAPTM4AQ15012 233 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 LARS2Q15031 903 aaKnown RBP6.24□□□□□ -1.41
VPS41-208ENST00000448833 TSC22D1Q15714 1073 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 MAPK14Q16539 360 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 PGGHGQ32M88 737 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 SPANXN4Q5MJ08 99 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 TMEM225Q6GV28 225 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 ZNF544Q6NX49 715 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 PODNL1Q6PEZ8 512 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 PAQR6Q6TCH4 344 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 KLHL24Q6TFL4 600 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 CLEC2AQ6UVW9 174 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 FRRS1Q6ZNA5 592 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 MSANTD1Q6ZTZ1 278 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 ANKRD46Q86W74 232 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 WDR60Q8WVS4 1066 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 ZNF775Q96BV0 537 aaPredicted RBP6.24□□□□□ -1.41
VPS41-208ENST00000448833 PKNOX2Q96KN3 472 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 ZNF317Q96PQ6 595 aaPredicted RBP6.24□□□□□ -1.41
VPS41-208ENST00000448833 ZNF300Q96RE9 604 aaPredicted RBP6.24□□□□□ -1.41
VPS41-208ENST00000448833 DHRS9Q9BPW9 319 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 PAIP2Q9BPZ3 127 aaKnown RBP6.24□□□□□ -1.41
VPS41-208ENST00000448833 KLHDC3Q9BQ90 382 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 TRAF4Q9BUZ4 470 aaPredicted RBP6.24□□□□□ -1.41
VPS41-208ENST00000448833 TAPBPLQ9BX59 468 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 SLCO5A1Q9H2Y9 848 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 RAD21L1Q9H4I0 556 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 SERHL2Q9H4I8 314 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 OBP2BQ9NPH6 170 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 CBLN4Q9NTU7 201 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms