RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 DSPPQ9NZW4 1301 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 CDHR4A6H8M9 788 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 CFAP73A6NFT4 308 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 H7C1Q1 480 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 ZNF208O43345 1280 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 DNPH1O43598 174 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 PGM3O95394 542 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 COX5AP20674 150 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 ADSLP30566 484 aaPredicted RBP18.32■□□□□ 0.52
SDC1-205ENST00000447124 MAGEA8P43361 318 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 POLR2HP52434 150 aaKnown RBP18.32■□□□□ 0.52
SDC1-205ENST00000447124 SLC16A1P53985 500 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 FOXG1P55316 489 aaPredicted RBP18.32■□□□□ 0.52
SDC1-205ENST00000447124 KRTAP21-3Q3LHN1 58 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 ZNF836Q6ZNA1 936 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 MSANTD1Q6ZTZ1 278 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 PEX5LQ8IYB4 626 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 TMEM171Q8WVE6 324 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 GTF2H4Q92759 462 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 ITCHQ96J02 903 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 USB1Q9BQ65 265 aaKnown RBP18.32■□□□□ 0.52
SDC1-205ENST00000447124 POTEKPQ9BYX7 375 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 PAIP1Q9H074 479 aaKnown RBP18.32■□□□□ 0.52
SDC1-205ENST00000447124 SLCO1B3Q9NPD5 702 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 P2RX2Q9UBL9 471 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 NOSIPQ9Y314 301 aaKnown RBP18.32■□□□□ 0.52
SDC1-205ENST00000447124 RNF115Q9Y4L5 304 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 PCDHB14Q9Y5E9 798 aa18.32■□□□□ 0.52
SDC1-205ENST00000447124 FAM234BA2RU67 622 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 TRIM64A6NGJ6 449 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 TRIM64BA6NI03 449 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 CLOCKO15516 846 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 ANP32DO95626 131 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 CNOT4O95628 575 aaKnown RBP18.31■□□□□ 0.52
SDC1-205ENST00000447124 CD3EP07766 207 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 NUDT7P0C024 238 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 DSTNP60981 165 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 GNA13Q14344 377 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 RPS26P11Q5JNZ5 115 aaPredicted RBP18.31■□□□□ 0.52
SDC1-205ENST00000447124 FBXW9Q5XUX1 488 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 SLC2A7Q6PXP3 512 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 FUNDC1Q8IVP5 155 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 MIER2Q8N344 545 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 ZHX1-C8orf76Q96EF9 292 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 COX4I2Q96KJ9 171 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 RSPO3Q9BXY4 272 aaPredicted RBP18.31■□□□□ 0.52
SDC1-205ENST00000447124 RMND5AQ9H871 391 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 EMC3Q9P0I2 261 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 LAMP3Q9UQV4 416 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 TLN2Q9Y4G6 2542 aa18.31■□□□□ 0.52
SDC1-205ENST00000447124 ALPK2Q86TB3 2170 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 FN1P02751 2386 aaKnown RBP18.3■□□□□ 0.52
SDC1-205ENST00000447124 LY6G6DO95868 133 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 BCHEP06276 602 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 SOD3P08294 240 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 DANCRP0C864 163 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 PRG2P13727 222 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 HOXB9P17482 250 aaPredicted RBP18.3■□□□□ 0.52
SDC1-205ENST00000447124 IDH3AP50213 366 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 LTBQ06643 244 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 BSPH1Q075Z2 132 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 STK11Q15831 433 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 PIGXQ8TBF5 258 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 DDIT4LQ96D03 193 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 TMEM19Q96HH6 336 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 C7orf26Q96N11 449 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 EBF4Q9BQW3 602 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 ESRP2Q9H6T0 727 aaKnown RBP18.3■□□□□ 0.52
SDC1-205ENST00000447124 NGBQ9NPG2 151 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 NPAP1Q9NZP6 1156 aa18.3■□□□□ 0.52
SDC1-205ENST00000447124 ZANQ9Y493 2812 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 OVOL3O00110 214 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 GPR171O14626 319 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 GGT1P19440 569 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 MRPL19P49406 292 aaKnown RBP18.29■□□□□ 0.52
SDC1-205ENST00000447124 CRISP3P54108 245 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 SLC35A1P78382 337 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 PPA1Q15181 289 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 RGNQ15493 299 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 TIMM23BQ5SRD1 257 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 C6orf10Q5SRN2 563 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 CLEC9AQ6UXN8 241 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 ZNF440Q8IYI8 595 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 UBE2J2Q8N2K1 259 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 KBTBD8Q8NFY9 601 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 APH1AQ96BI3 265 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 BDH2Q9BUT1 245 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 SLC52A3Q9NQ40 469 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 CALML5Q9NZT1 146 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 SLAMF8Q9P0V8 285 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 ZNF443Q9Y2A4 671 aaPredicted RBP18.29■□□□□ 0.52
SDC1-205ENST00000447124 FLVCR1Q9Y5Y0 555 aa18.29■□□□□ 0.52
SDC1-205ENST00000447124 A0A0G2JPF8 293 aa18.28■□□□□ 0.52
SDC1-205ENST00000447124 HNRNPCL2B2RXH8 293 aa18.28■□□□□ 0.52
SDC1-205ENST00000447124 HNRNPCL3B7ZW38 293 aa18.28■□□□□ 0.52
SDC1-205ENST00000447124 CLIC1O00299 241 aa18.28■□□□□ 0.52
SDC1-205ENST00000447124 SMAD7O15105 426 aaKnown RBP18.28■□□□□ 0.52
SDC1-205ENST00000447124 HNRNPCL1O60812 293 aaKnown RBP18.28■□□□□ 0.52
SDC1-205ENST00000447124 MRPL33O75394 65 aaKnown RBP18.28■□□□□ 0.52
SDC1-205ENST00000447124 HNRNPCL4P0DMR1 293 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms