RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 CD53P19397 219 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 CAPZA2P47755 286 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 SLC9A5Q14940 896 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 AGERQ15109 404 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 ZNF660Q6AZW8 331 aaPredicted RBP11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 ARL14Q8N4G2 192 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 ZNF614Q8N883 585 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 DNAAF1Q8NEP3 725 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 ARSGQ96EG1 525 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 ZNF471Q9BX82 626 aaPredicted RBP11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 FN3KQ9H479 309 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 NOX4Q9NPH5 578 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 MRPL17Q9NRX2 175 aaKnown RBP11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 WSB2Q9NYS7 404 aaPredicted RBP11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 ZMIZ1Q9ULJ6 1067 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 HS3ST2Q9Y278 367 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 MYOFQ9NZM1 2061 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 TRAV27A0A087WT01 109 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 PSMD9O00233 223 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 RCBTB2O95199 551 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 KRT33BQ14525 404 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 SWI5Q1ZZU3 235 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 PCGF3Q3KNV8 242 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 BPIFCQ8NFQ6 507 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 OR13C2Q8NGS9 318 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 PFN4Q8NHR9 129 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 ENKD1Q9H0I2 346 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 SLC38A1Q9H2H9 487 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 SCN10AQ9Y5Y9 1956 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 PLXNB3Q9ULL4 1909 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 SPTBP11277 2137 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 KANTRA0A1W2PQU2 76 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 H3BSH0 61 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 ERI3O43414 337 aaKnown RBP11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 PPP1R3DO95685 299 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 HOXB3P14651 431 aaPredicted RBP11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 FOXK2Q01167 660 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 BEX5Q5H9J7 111 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 OR4C11Q6IEV9 310 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 TSSK4Q6SA08 328 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 PXKQ7Z7A4 578 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 OR2A12Q8NGT7 310 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 SOCS4Q8WXH5 440 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 PGLYRP3Q96LB9 341 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 PDCD10Q9BUL8 212 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 TMPRSS13Q9BYE2 586 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 NRIP3Q9NQ35 241 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 POT1Q9NUX5 634 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 ERVK-19Q9WJR5 959 aa11.89□□□□□ -0.51
SFSWAP-209ENST00000540469 TRAV1-2A0A0B4J238 106 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 F8W036 122 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 ZNF806P0C7X5 589 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 GKN3PP0CG01 181 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 ELNP15502 786 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 CSNK2A2P19784 350 aaPredicted RBP11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 HOXA1P49639 335 aaPredicted RBP11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 ACTC1P68032 377 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 ACTA1P68133 377 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 LCTLQ6UWM7 567 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 FRRS1Q6ZNA5 592 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 SSX6Q7RTT6 188 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 RANBP3LQ86VV4 465 aaPredicted RBP11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 HAVCR2Q8TDQ0 301 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 C2CD4CQ8TF44 421 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 TFGQ92734 400 aaPredicted RBP11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 DMRTA2Q96SC8 542 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 ZCCHC4Q9H5U6 513 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 EXO5Q9H790 373 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 SYNPO2LQ9H987 977 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 ZNF334Q9HCZ1 680 aaPredicted RBP11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 WDR45Q9Y484 360 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 MEIS3P1A6NDR6 274 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 SNRPGP15A8MWD9 76 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 ACOT7O00154 380 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 ZNF254O75437 659 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 APOC1P02654 83 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 LAMP2P13473 410 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 DHODHQ02127 395 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 ELFN2Q5R3F8 820 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 RAB11FIP2Q7L804 512 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 TMED4Q7Z7H5 227 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 ZNF546Q86UE3 836 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 FAM129CQ86XR2 697 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 SPAG16Q8N0X2 631 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 OR9A2Q8NGT5 310 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 OR8S1Q8NH09 359 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 LRIG1Q96JA1 1093 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 CASD1Q96PB1 797 aa11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 PURGQ9UJV8 347 aaKnown RBP11.88□□□□□ -0.51
SFSWAP-209ENST00000540469 ABHD14A-ACY1A0A1B0GW23 586 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 OR2M5A3KFT3 312 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 RAB19A4D1S5 217 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 CTDSPLO15194 276 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 RBBP9O75884 186 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 ASGR2P07307 311 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 ZGLP1P0C6A0 271 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 RD3LP0DJH9 198 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 TIMP2P16035 220 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 NT5EP21589 574 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 MAGEB1P43366 347 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms